LOC110532252 (fkb1a)


Basic Information

Item Value
gene id LOC110532252
gene name fkb1a
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48278174 ~ 48286453 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615980.2
tactttccttactgaggagttggcatcACTGGGTCACGCCGCTGCACGGAGACAGTTATGAACAGCAACTGAAGTACCATATTGCGGGAGGCGAGTTTCTTGACAGGGTGTAACGAACAAATGGGAGTCGAAATTGAGACAATAACCCCTGGCGATGGAAGGACTTTCCCTAAAAAAGGACAGACGTGTGTCGTGCATTATGTTGGCTCCCTGACAGATGGACGCAAGTTTGACTCATCCCGTGACAGTGACAAGCCCTTTAGGTTTAAAATAGGAAAACAGGAAGTGATCCGTGGCTGGGACGAGGGAGTCGTGCAGATGAGTGTCGGTCAGAGGGCCAGGCTGACCTGCTCGCCTGACTTTGCTTACGGGGCGAAGGGCCACCCGGGGATCATCCCACCCAACGCCACCCTCCTCTTTGATGTTGAGCTACTAAGCATTGAATGAAGCATCCCCACTAcctattttctttatttaaaaatattGTCACTTCCTACCTTGGAAACATATAGAGAAGATAGGAGAGTCTACACTTGATTCTATAAGAGGCTTGAGTCTATAGTTCCAACACTTTGGTCAATGTTTTATCCATGTATACAAAATCTGTGTTTttgtcagtagctaggtttccatccaattggtgacagattttcatgcgaatattctaaaatctagATTTACTCACCAGAgatgcgtgatgacgtagtgcacataattACTGTTGCAGCTAATTTCCCATAtaccaatctttttttttttaagaaaaaaatgggtttccatgcaTTTGTAACTCTGTTTTTTTCCACAAATGTTGCATTATAgtaaatgtgcccactctggtattggcacatgtgctctagccaacagtttACAGATACAATGTGGGTATAGCCTACAAAAGAGCTagattatatgtatatatttttcaaacagcagccaagcatcgatcatcatgtcaccagaattagaccctcaatatttattgaaaggagcatcaagagaatcaccgtgcactttcaccaccctgtgaagttcaatATAACTGATTTTatttgtagcctaataaactgcatgctttcccgagtcgtagtgggaggaccacgcaacatatcatcacgtgactTTGAGATGATAgttatcaatatttgcgcataaaagcAATTCCAttgccatttctcgcataatacattttactgacacataaagatcccaccttgtgtagtgtattttgttttgtcgacatttggaaagttcaCAGAAAAATGTACTGTTTCCACCAGGCCTGTGACATTTTCTAACcaacataaaaaggttggatggaaaccttgtTACTCAgttatttttttctttcaattCACCCTCTTAAACACCTATGAGCCATAACCTTAAACATCTTGATGTTCTTATTCTTGAATTTTTGAATTGTGCTTTACTTTTCTTTGTTTCTCAAATTACTGTTTGTGCATGGTTATGAGTAATACAAAATACCAATGAAATATTAGCAGTGACATTCATCTGTTTGTAAGAGTACCTATTACTAACATGGAGGGCTGGTGCTTGAGTAAATCTTAAAGGGGAAAATGCACTTAAACGATCTTttggtatttatttttttagtccattgttgattcagtcccaaaaatgttttggacGTCAAgtttcaagatattggactttcaagaaaCAAAGTGTCACTGGGCATATCATGATTATGAAAATGCTTAGATTTGTTTTTGAGTggattttctctttttttttgacTGAGGAACAAAATTAAAAGAATATGAAAAGCACATATTTGCATCCACACCTCTCCCAGCTGAAAGTATAACAAATATTAATTGATTTGGTTTAGTGTAATGTTGAGTGGGATAAGTGTAGTAAAATATTGAGTTGTGGGATACCTAAAATAAGAACTTTGTTTGATACGTAATTTATCCAGACCTTTCACAGTGATTCTTTGATTTTGATTGTTAATTTTATTAGGAGCTAGTGAGCATTCTGCACAGGGGAACTAGTACAGTAGACAATTCTTGTATCCTATGTGTGCCTCTCTTTACCAGACACACAACCACAAACTAGCCTGGTCTGCATGTTAATAATATCCTGATCTATAGGTGTTAATGCCTTGCATTTGACTCACTTTTTCTTTCCAAGTCAAATCTTTAAACCCACTGAGAGCTTTAAACATATTAGTGCAAAGATGGGGGAACTGTATTGATCCAGTTCTCGGGCGTGCGCAGTTCGAAGAGAAACCTCTTAGTTTACTTAGCAGTGGATATGATCAAATGCAAGTTGACATGTAGTGCAAGTTAACATCTAGTGCAAGTTAACATGTAACTAGATGGTTATCATCTACAACATTGCTTGGAGGCAAGAATACTGAGTCAGGGAGGCAAGGTAAAATATCACAAATAAAGCTAGATAAAGGCAGAAAAATAATATACTTCTTAATCTTAAACAGCTATAAGCATCAGTCTTGTGTGTTTTTCATGGTCATCACTCACCCGCTGTTAAGTTTTCCAAGGTCCCGACATCGGCATTAGCTGTTctgctagttttttttttttatatgtcgGGAAAGTGACCTTTGATGGTCAACAGAAAATGGCTCTGTAGTATACTCTCATTAGTTGGAGTAGTGATTATGCTTTTCTTAGAAGTGAAATGCCTGAATCGATTGTCACCTTATTTTGTTTCACAAATTGCCATTATATTTTTCCAGTGCCAACTTAATTGGCATCTGAATTACTTATACTGTACCTGTAATGTAAAGTAATTATTTTGTCAGTGTCATTAGTAAGACTGACCACACTGCCTAAATGAAATGCTGTGTTGTTGTAGTCTGGTGACAGAGGCATCCATGTTTTGTATCACATTAAATAAAGCCTGTTGAAATAATGTTAA
>TU924356
catcACTGGGTCACGCCGCTGCACGGAGACAGTTATGAACAGCAACTGAAGTACCATATTGCGGGAGGCGAGTTTCTTGACAGGGTGTAACGAACAAATGGGAGTCGAAATTGAGACAATAACCCCTGGCGATGGAAGGACTTTCCCTAAAAAAGGACAGACGTGTGTCGTGCATTATGTTGGCTCCCTGACAGATGGACGCAAGTTTGACTCATCCCGTGACAGTGACAAGCCCTTTAGGTTTAAAATAGGAAAACAGGAAGTGATCCGTGGCTGGGACGAGGGAGTCGTGCAGATGAGTGTCGGTCAGAGGGCCAGGCTGACCTGCTCGCCTGACTTTGCTTACGGGGCGAAGGGCCACCCGGGGATCATCCCACCCAACGCCACCCTCCTCTTTGATGTTGAGCTACTAAGCATTGAATGAAGCATCCCCACTAcctattttctttatttaaaaatattGTCACTTCCTACCTTGGAAACATATAGAGAAGATAGGAGAGTCTACACTTGATTCTATAAGAGGCTTGAGTCTATAGTTCCAACACTTTGGTCAATGTTTTATCCATGTATACAAAATCTGTGTTTttgtcagtagctaggtttccatccaattggtgacagattttcatgcgaatattctaaaatctagATTTACTCACCAGAgatgcgtgatgacgtagtgcacataattACTGTTGCAGCTAATTTCCCATAtaccaatctttttttttttaagaaaaaaatgggtttccatgcaTTTGTAACTCTGTTTTTTTCCACAAATGTTGCATTATAgtaaatgtgcccactctggtattggcacatgtgctctagccaacagtttACAGATACAATGTGGGTATAGCCTACAAAAGAGCTagattatatgtatatatttttcaaacagcagccaagcatcgatcatcatgtcaccagaattagaccctcaatatttattgaaaggagcatcaagagaatcaccgtgcactttcaccaccctgtgaagttcaatATAACTGATTTTatttgtagcctaataaactgcatgctttcccgagtcgtagtgggaggaccacgcaacatatcatcacgtgactTTGAGATGATAgttatcaatatttgcgcataaaagcAATTCCAttgccatttctcgcataatacattttactgacacataaagatcccaccttgtgtagtgtattttgttttgtcgacatttggaaagttcaCAGAAAAATGTACTGTTTCCACCAGGCCTGTGACATTTTCTAACcaacataaaaaggttggatggaaaccttgtTACTCAgttatttttttctttcaattCACCCTCTTAAACACCTATGAGCCATAACCTTAAACATCTTGATGTTCTTATTCTTGAATTTTTGAATTGTGCTTTACTTTTCTTTGTTTCTCAAATTACTGTTTGTGCATGGTTATGAGTAATACAAAATACCAATGAAATATTAGCAGTGACATTCATCTGTTTGTAAGAGTACCTATTACTAACATGGAGGGCTGGTGCTTGAGTAAATCTTAAAGGGGAAAATGCACTTAAACGATCTTttggtatttatttttttagtccattgttgattcagtcccaaaaatgttttggacGTCAAgtttcaagatattggactttcaagaaaCAAAGTGTCACTGGGCATATCATGATTATGAAAATGCTTAGATTTGTTTTTGAGTggattttctctttttttttgacTGAGGAACAAAATTAAAAGAATATGAAAAGCACATATTTGCATCCACACCTCTCCCAGCTGAAAGTATAACAAATATTAATTGATTTGGTTTAGTGTAATGTTGAGTGGGATAAGTGTAGTAAAATATTGAGTTGTGGGATACCTAAAATAAGAACTTTGTTTGATACGTAATTTATCCAGACCTTTCACAGTGATTCTTTGATTTTGATTGTTAATTTTATTAGGAGCTAGTGAGCATTCTGCACAGGGGAACTAGTACAGTAGACAATTCTTGTATCCTATGTGTGCCTCTCTTTACCAGACACACAACCACAAACTAGCCTGGTCTGCATGTTAATAATATCCTGATCTATAGGTGTTAATGCCTTGCATTTGACTCACTTTTTCTTTCCAAGTCAAATCTTTAAACCCACTGAGAGCTTTAAACATATTAGTGCAAAGATGGGGGAACTGTATTGATCCAGTTCTCGGGCGTGCGCAGTTCGAAGAGAAACCTCTTAGTTTACTTAGCAGTGGATATGATCAAATGCAACTAGTGCAAGTTAACATGTAACTAGATGGTTATCATCTACAACATTGCTTGGAGGCAAGAATACTGAGTCAGGGAGGCAAGGTAAAATATCACAAATAAAGCTAGATAAAGGCAGAAAAATAATATACTTCTTAATCTTAAACAGCTATAAGCATCAGTCTTGTGTGTTTTTCATGGTCATCACTCACCCGCTGTTAAGTTTTCCAAGGTCCCGACATCGGCATTAGCTGTTctgctagttttttttttttatatgtcgGGAAAGTGACCTTTGATGGTCAACAGAAAATGGCTCTGTAGTATACTCTCATTAGTTGGAGTAGTGATTATGCTTTTCTTAGAAGTGAAATGCCTGAATCGATTGTCACCTTATTTTGTTTCACAAATTGCCATTATATTTTTCCAGTGCCAACTTAATTGGCATCTGAATTACTTATACTGTACCTGTAATGTAAAGTAATTATTTTGTCAGTGTCATTAGTAAGACTGACCACACTGCCTAAATGAAATGCTGTGTTGTTGTAGTCTGGTGACAGAGGCATCCATGTTTTGTATCACATTAAATAAAGCCTGTTGAAATAATGTTAATTTTATTATTCAGAAAGCACTTTTTCAGATGCTGGCCATCATTGTTCTTGATGTTACAGCTTTCTAGGTGTGTGGCACAAATGGTCCTCCTATGTATTGTCTATTTGTGTGCCGAGTTACATACGCAGGCAAAACCAatgatgaaataaaaaaaatgtgccgTTG

Function

NR:

description
peptidyl-prolyl cis-trans isomerase FKBP1A-like

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0033017 sarcoplasmic reticulum membrane cellular_component
GO:0005528 FK506 binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615980.2 False 2907 mRNA 0.38 5 48278339 48286453
TU924356 True 3024 TUCP 0.38 6 48278174 48286430

Neighbor

gene id symbol gene type direction distance location
LOC110532251 LOC106572119 coding downstream 1705 48263681 ~ 48276634 (-)
gata5 LOC106572125 coding downstream 465116 47804705 ~ 47813223 (-)
rbbp8l LOC106572126 coding downstream 512418 47744022 ~ 47765921 (-)
LOC110532244 LOC106572127 coding downstream 546770 47707359 ~ 47731569 (-)
LOC110531190 clcn6 coding downstream 601787 47642136 ~ 47676649 (-)
LOC110532253 LOC106572118 coding upstream 4959 48291412 ~ 48300323 (-)
LOC110532255 LOC106572115 coding upstream 56152 48342605 ~ 48364617 (-)
LOC110532256 LOC106572112 coding upstream 117553 48404006 ~ 48428436 (-)
trnag-ucc-228 NA coding upstream 130736 48417189 ~ 48417260 (-)
arfgef2 arfgef2 coding upstream 145682 48432135 ~ 48468728 (-)
G812449 NA non-coding downstream 26328 48157768 ~ 48252011 (-)
G812412 NA non-coding downstream 186799 48088705 ~ 48091540 (-)
G812230 NA non-coding downstream 252239 48025055 ~ 48026100 (-)
G812227 NA non-coding downstream 255338 48021269 ~ 48023001 (-)
G812219 NA non-coding downstream 268614 48004058 ~ 48009725 (-)
G812551 NA non-coding upstream 32930 48319383 ~ 48320129 (-)
G812804 NA non-coding upstream 171602 48458055 ~ 48458386 (-)
G812814 NA non-coding upstream 190138 48476591 ~ 48504089 (-)
G812837 taf13 non-coding upstream 294825 48581278 ~ 48582776 (-)
G811300 NA other downstream 1096542 47178804 ~ 47181797 (-)
G810563 NA other downstream 2022621 46253514 ~ 46256922 (-)
zmynd12 zmynd12 other downstream 2087347 46187156 ~ 46200250 (-)
pdyn pdyn other downstream 2959573 45316564 ~ 45318766 (-)
G812840 NA other upstream 222192 48508645 ~ 48509094 (-)
G813357 LOC106578276 other upstream 628982 48915435 ~ 48915704 (-)
G814020 NA other upstream 1177504 49463957 ~ 49466762 (-)
G814157 edem2 other upstream 1448692 49735145 ~ 49736111 (-)
G815044 NA other upstream 1931903 50218356 ~ 50218697 (-)

Expression


Co-expression Network