LOC110532257 (LOC106572113)


Basic Information

Item Value
gene id LOC110532257
gene name LOC106572113
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48386767 ~ 48394099 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615992.2
TGTTTACTTGCACTAGTTTAGTCTCTCTCGGTCTAAACTCTCACCCGCCTCCTCCCAgcctctatccctccccttctctcaccCGCCTTTCCTGGTCAGTGTGATTGTTTGTTGGCGATAAGATCCAAGGGTGAGACACAGTGACAGTGAGCCAGAGCAAAGTGAAGAGGGGCTGCTCTTATTTCTCCGTCTTTTTTTCCTAAAGGTCCACTCTCAGGACAACTATGCTTCACCTGACAACAGGACGTGTGGGGTGCTTGCTTTCCAAGCAAGCGGTGGTGGCACTGACGGGCAGTGGTGCAAGGATGTCAAGCCATGGCCACCACGAGGTGTCCGACTCAGTGGACATGTCACAGCCAATGTACTGGGATCGTCTAGACACCCCTCTGCCAGACAGACCATGGAAGGATGTCCTCGATTCTACGGATAAGAGCCTGAAACAGAAGGAGAAGGGTCCCTGGACTGCGCTGTCCAAGGAGGAGAAAATCGCCTTGTACCGGCTGAAGTTCAACCACACCTATCCTGAGATGAAGAGGCCGTCCCATGAGTGGAAGACGGTGATTGGTGGAATGTTCATCTTCTTTGGCATCACTGGTCTGGTGGTCTTTTGGCAGGGCCACTATGTGTACCCACCCCAACCTCATACCTTTGGTGAGGAGTGGCAGGCTAAGCAGATCCAGAGGATGCTGGATATGCGGATCAACCCAATTGAGGGCTTCTCTGCCCAGTGGGACTACAAGAACAAACAATGGAAGTAAAGGAAGGGAATAGACCGCTGCTGGAAGGAGGAATGGTTCGACTTGACACCTTGAGCCTCTGTTCAGACATCATAACAGCAATCCAGCCATCTGAATCCATTCTCTTACTATTTAATAAATAACTAAAAACGG

Function

NR:

description
cytochrome c oxidase subunit 4 isoform 2, mitochondrial-like

GO:

id name namespace
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615992.2 True 890 mRNA 0.51 5 48386767 48394099

Neighbor

gene id symbol gene type direction distance location
snphb LOC106572120 coding upstream 127430 48224647 ~ 48259337 (+)
ntsr1 LOC106572121 coding upstream 227803 48104332 ~ 48158964 (+)
LOC110532248 LOC106572122 coding upstream 363577 47986339 ~ 48023190 (+)
LOC110532243 mthfr coding upstream 692619 47679540 ~ 47694148 (+)
LOC110533018 LOC106572129 coding upstream 750354 47635370 ~ 47636413 (+)
LOC110532258 LOC106572114 coding downstream 6538 48400637 ~ 48404003 (+)
taf13 taf13 coding downstream 187144 48581243 ~ 48582509 (+)
LOC110531191 LOC106566483 coding downstream 222224 48616323 ~ 48617448 (+)
LOC118966185 NA coding downstream 224884 48618983 ~ 48620336 (+)
si:rp71-17i16.5 LOC106572104 coding downstream 232220 48626319 ~ 48636018 (+)
G812555 NA non-coding upstream 56940 48329596 ~ 48329827 (+)
G812382 NA non-coding upstream 100341 48278177 ~ 48286426 (+)
G812101 NA non-coding upstream 354649 48029315 ~ 48032118 (+)
G812103 NA non-coding upstream 358780 48027529 ~ 48027987 (+)
G812102 NA non-coding upstream 360588 48024222 ~ 48026179 (+)
G812613 NA non-coding downstream 32185 48426284 ~ 48435659 (+)
G812683 NA non-coding downstream 140472 48534571 ~ 48534871 (+)
G812684 LOC106572106 non-coding downstream 143928 48538027 ~ 48541698 (+)
G812951 NA non-coding downstream 347703 48741802 ~ 48742338 (+)
G812143 NA other upstream 404466 47982001 ~ 47982301 (+)
G809685 NA other upstream 2251035 46134731 ~ 46135732 (+)
G807841 NA other upstream 3933690 44442662 ~ 44453077 (+)
G807677 NA other upstream 4190726 44195715 ~ 44196041 (+)
G805600 NA other upstream 6037981 42346176 ~ 42348786 (+)
G812688 LOC106572106 other downstream 151355 48545454 ~ 48570593 (+)
G813071 NA other downstream 565650 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 609220 48962187 ~ 49006710 (+)
G813139 NA other downstream 721038 49115137 ~ 49115618 (+)
G815428 NA other downstream 2402115 50796214 ~ 50800381 (+)

Expression


Co-expression Network