LOC110532258 (LOC106572114)


Basic Information

Item Value
gene id LOC110532258
gene name LOC106572114
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48400637 ~ 48404003 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615993.2
actttgtttatttatgtgacaaataacattttattttattttactgtgCGGGACCTTTAATCCACTCAAACATCAGTAAtacaaaacacaaacaaaaaacGCTCAGTCCTTCAAAATACACTCAGAGCCCTACTCAGATCTGGTGACATGAGAGGACGGAACTGCTGCTCCAGTCAGCAAGCCATACGTCCTTCATTCCCAAGAAGCGTTCAGCTGCAGATACAATGATTATTGATCTTTCCACTCCTGCAGTGCGGGTTATCGACATAGCAATAAATGCCAAACGATCTACTTTCTTCACAACACGGGTATCTGGATCCTGTATCTTGTGAACGGCACCCATATCACTAGACTGTGGTGTCTCCAGGACAACCAAACCACTAGAACATCTCTTATCCTAGCCATCTCTGCCTCCTTCACCCTTACAGAACATTCAGAGAAGTCATGTGCATGCTTCCCACCACAATTGCGACATCCAACGTCATCATCTTCCGCAGGAAAAATAATCAGTCAAGCCATGCTCTCTCCAAACACTTGACACAATGTCATGCCCAAATGGTTTGCAGTTGGAACACTGCAGTAACCTGGGGACAAATGCCCTCACATGGTAACTTACATATCCCATCTTGACATGTGTAGGGAGCGGCTccacatcaaaaactgtaacacAGACCTGCTCTTTATCTTCTTTTCATTGAACATAATCGTCAAGCCCCAACTACTTCAGAAATGTTCATTCTTCTCAGCCCCAACTTCCACAAATACTCCAGAAATAACACCCTTGATCGGTGCCCTGCTCTGAAAATCGAAAGAAGTCACGTCTTTCTCCTTGATTCTGTGAGGCGCAATACACGCTCCGTTTGTTTTACCAAAGAAATCTACAAAATTCAACTCCTGGTCCCCCTCACAGATTCTACAGAACCCATCACTTTCTTCACCATCTTGGCAACATCAAAGCAGATCTCCCAGGTACATCTTCCCATCCTCAAACTGCACTCCTACTACAAAACTGGTAAGTAGTTGTGACATGAGGAGTATGCTAACTAGACAGCGTTTTAACTGGGATTTTAGCTCTCTTTATCCATGCTTTAGCGACTGTAGTCCATCCAGTATTTTCAGCACCCTCATTGTCATCTTTGCTAGCGCCATCAAATTCTAAGTCAGTATCCACTTCTGCCGTTCTCTCTCACACTGACAGATCCCAACATCTACCGTTGGAGTCATGaaacccacaataacatctgctaaatagatgtatgtgaccaataacatttcattttaATTGATTTGAGAAGGGTTAGCCTTGCACAGGTGAGAGTGATTAGTCAATCAGTGCATACTCTATAAACAGGTGTCAGAAGAAATTCTTAAACACTTTCTGAAGGTGAGTGTGTGGGCTGTAACTCAGTAGCCCATGGATTTGACTTGTTCTGTGATTGCAAGTTAGTCTTTGAAGTCCCTAAAGAAACTAGGCCTTTTCATCTCAACCTTTGTTTTTACGGCATTACGCAGAGAGGGAAGATGCTTCACCTGACAAAAGGATGTGTGGGGTGCTTGCTTTTCAGGCGAGCAGTTTTGGCACTGACCAACAGTGGTGCAAGGATGTCAAGCCATGACCACCACGAGGTCTCCAACAACTTGGACATGTCCCAGCCAATGTACTCGGATCGTCTGGACATCCCTCTGCCAGACAGACCATGGAAGGATGTCCTCGACTCTACGGATAAGAACCTGAAACAGAAGGAGAAGGGTCCCTGGACTGCGCTGTCCAAGGAGGAGAAAATTGCCTTGTACAGGCTGAAGTTCAACCTCACCTATCCTGAGATGAAGAGGCCGTCCCATGAGTGGAAAACTGTGATTGGTGGGATGTTCATAGTCTTTGGCATCACTGGTCTGGTGGTCTTTTGGCAGTGCCACTATGTGTACCCACCCCAACCTCCTACCTTTGATGAGGAGTGGCAGGCTAAGCAGCTCCAGAGAATGCTGGATATGCGGACCAACCCAATCGAGGGCCTCTCTTCCCAGTGGGACTACAAGAACAAACAATGGAAGTAAAGGAAGGGAATAGACCGCTGCTGGAAGGAGGAATGGTTCGACTTGACACCTTGAGCCTCTGTTCAGCCGCCATAATGGCAATCCATCCATTCTCTTACGGTTTAAGTAATACATGACTAAACtggtttccttctctctccatctgagaAAATAACAGTATATTATGGGCTGCTTGTCCTCAACCTAATTTCTGCTTTAGTGTTCCTGTGGTCGTCTGTCTGTTTTGGCCGTAAGTGAATGTGTCAGGACCAACAACAAAGAAACAGCCTACATTTGTTTTATCCCCTTGCTGAAACTCTCTAGAGGAATTTCTACTCAAATGGTCAACTGTTCAAAGTATCACTGTGTACACATTAAATCCTTGTGCCTTTGTTTTCCTTTCCTAATATCAGTTAACATTGCAAAGAATGTTAGTTTTGTAGAAATAAAGTCAGTGTTCTCCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615993.2 True 2498 mRNA 0.44 5 48400637 48404003

Neighbor

gene id symbol gene type direction distance location
LOC110532257 LOC106572113 coding upstream 6538 48386767 ~ 48394099 (+)
snphb LOC106572120 coding upstream 141300 48224647 ~ 48259337 (+)
ntsr1 LOC106572121 coding upstream 241673 48104332 ~ 48158964 (+)
LOC110532248 LOC106572122 coding upstream 377447 47986339 ~ 48023190 (+)
LOC110532243 mthfr coding upstream 706489 47679540 ~ 47694148 (+)
taf13 taf13 coding downstream 177240 48581243 ~ 48582509 (+)
LOC110531191 LOC106566483 coding downstream 212320 48616323 ~ 48617448 (+)
LOC118966185 NA coding downstream 214980 48618983 ~ 48620336 (+)
si:rp71-17i16.5 LOC106572104 coding downstream 222316 48626319 ~ 48636018 (+)
lamb2l LOC106572102 coding downstream 233534 48637537 ~ 48698384 (+)
G812555 NA non-coding upstream 70810 48329596 ~ 48329827 (+)
G812382 NA non-coding upstream 114211 48278177 ~ 48286426 (+)
G812101 NA non-coding upstream 368519 48029315 ~ 48032118 (+)
G812103 NA non-coding upstream 372650 48027529 ~ 48027987 (+)
G812102 NA non-coding upstream 374458 48024222 ~ 48026179 (+)
G812613 NA non-coding downstream 22281 48426284 ~ 48435659 (+)
G812683 NA non-coding downstream 130568 48534571 ~ 48534871 (+)
G812684 LOC106572106 non-coding downstream 134024 48538027 ~ 48541698 (+)
G812951 NA non-coding downstream 337799 48741802 ~ 48742338 (+)
G812143 NA other upstream 418336 47982001 ~ 47982301 (+)
G809685 NA other upstream 2264905 46134731 ~ 46135732 (+)
G807841 NA other upstream 3947560 44442662 ~ 44453077 (+)
G807677 NA other upstream 4204596 44195715 ~ 44196041 (+)
G805600 NA other upstream 6051851 42346176 ~ 42348786 (+)
G812688 LOC106572106 other downstream 141451 48545454 ~ 48570593 (+)
G813071 NA other downstream 555746 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 599316 48962187 ~ 49006710 (+)
G813139 NA other downstream 711134 49115137 ~ 49115618 (+)
G815428 NA other downstream 2392211 50796214 ~ 50800381 (+)

Expression


Co-expression Network