LOC110532261 (LOC106572110)


Basic Information

Item Value
gene id LOC110532261
gene name LOC106572110
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48469219 ~ 48506892 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615995.2
TAAAAAGTGATCAAGATATGTAGTACTTGACTCTTACTAGCGGGAACGCGCCTGTTGGGAACGAGTGCAGTTTCCTGGGTGCGTGAAAGCGTCACACAGGACAGACAATGAAGTGGTTAGCTGGCGGTGTGGCGAGTATGAGAAGATAAATTACAGCAGGAGAGTGCGAAGGAGACGAGGGCAGCCCCGCGAGGGCAAGTGTGTGCTGCTGTGGCGGTCCTGCTAGCGAAAGATGAACAAGCACCACCGAGTGCCGAGCAACCGAACTCTGAGCTCCGTGGAGGTGAAGAGCAAGTTTGGGGCCGAATTCCGTCGGTTCTCCCTGGACCGGTCGAAGCCGGGCAGATTTGATGAGTTCTATGGACTCCTGCAGCACGTGCACCGGATACCCAATGTGGACCTGCTGGTGGGTTACGCCGACGTCCACGGCGACCTGTTGCCAATAAACAACAATGACAACTACCACAAGGCCATCTCTGTGGCTAGCCCGCTGCTACGGCTCTTCCTGCAGAGGAAAGAGGAAGCAGACTACTCTGCGTTTGGTACGGACTCTCTGACCCGTCCTAAGAAGACTGTCCTAGCTGCCGTGTTACTGCGGCCTGATGCCAACCGGAAGAAGCCCCCTGTGATCATTAGCCTGCCCAGGGACTTCAGGCCTGTCTCCTCCATCATCGACGTGGACATCCTCCCTGAGACACACCGCCGGGTGCGCCTCTACAAGCATGGCCAGGAGAAACCATTGGGTTTCTACATCCGCGACGGCTCCAGCGTCCGGGTCACACCCCAGGGTCTGGAGAAGGTTCCTGGGATCTTCATCTCCCGCATGGTGCCTGGGGGCCTAGCTGAGAGCACTGGCCTGCTGGCCGTCAACGACGAGGTGCTCGAGGTCAACGGCATCGAGGTTCAAGGCAAGTCTCTGGACCAGGTGACTGACATGATGATCGCCAACAGCCACAACCTCATTGTGACGGTGAAGCCAGCCAACCAGCGCAACAACATCATACGGAGCAGTGGcggagggggtgggggtggggcggCTTCCGGAAGTTCGGGTCGCTCTTCCGACAGTGGCGCAAGTTTCTACGGCTATTTCACCCCTGGTGCTGCCATAGCGACGACCCCGGCACACATCATCCAGAACTTCCACCCAGAGGAGCTAGAaagtgatgaggatgatgaggacCTGGTGATCGAGGCAGACGGGGAGGCCTTGCCCATCCCACGGGCAGCCTCGGCCAGCTGCAGCATGCCCTCCCTGCCCCGCTACGAGCCCCACCTGAACCTCCGCTCCACAGCCAACGGAGCCCTGGCCTCCAGCACCGGTTCACTGAGCACGGTCAGCACGCCCGACAGGGGCCTAGAAGGAAGGAGCCTTGAGGAGGACGGCACACTCATCACACTGTAGACACATACACTCTTCATACTTGCACAATAATTACAGCACGCACACATTCATACTTAAATAGTTTTACTCTCGCTCTTATATGCAAAAACATAGTCTTGCACATACATTCAGATACCTTCATGCATACACAAAGAACACAAACGCCAAGACCTACGCATGCGTGCCATAGTATCGCCACAGCCCTCCCTACACTGTGACCGACAGACACATTGATTACACATGGTGTTTGTGTGGAAGGGGAAACTCCTGATTCAAAACCACAAAAAGCACTTGTTTCTATTTTGGGAGGGGGAGACCGTTTCTATATTCTTCCTCTTGATGGCAGGAATGACATGGTATTCTcggttgttttttttttcaattttgtgAACTTTATGAAAGGACTGATTTTAATGAAAGAAGTGGGCAAATGAATGCACACATGTATGCTCTGACCTCTCCCTAGCTATTCTACCCTGGCTTGTTAGATAGAGGAGACTGTCTTGAGCTCATTTGACAATCTGCTTTTGCCTGGTCACTTTGCAAATGACAACAACCCTCTCCTAGGTGATTACAGCATGTGGGAACTGAAGTAATGGCTTCCATCCTACCTGTTACCATAGTAACCAACAAAGAGCAGAGGTCTGCAATAATACTCTAATTTTAGTCTGATGGGGAAAAAACAAATATGGGCTTCTTTGTTTGGATCCGAACAGGTTTAACCACTATTCCTATGTTTTTCCCCACAAGCTTTTAATGTTGATAATCATTAAAAACCAACTAGAAGCAAATATGCGAAGCAACTGGACTTTCGAAAATCTCTAAGTTTTAatgctgttttttttctcttttatTTCAATCAAATAATTTACTGTATGATTTTTATTTAGTGGAAAATAAGTGTACCGCAACATACAATATTGGAATTCTAAGGACCCATGGGTAAGGACCATATCTCTACATTACTGTCGTCGGTAATAATCCAGGATGTCGTTGTGTGGGGTGAGGAAGATCCAtctttcttgtttttattttttattgaacttttctttcctcatgacAAGGGCTATTTCCCCACTTTGTCTATAAAGCGTGACAGTATGTGATTGTATATGTGATTCTCTGATTTCTCTGACCATGACTCTTCACTCATCTCAGTATGTTCCTCATGTTCTCTCTTTTTTTCATCTGTCCATGTTTTGTATGGGTGGAAGTACATGTAACCGATAGGGTGGACTTTCTTACAGTTTTCCATCTCTAAGTTCACTTCGATGTGGCCTGAATCATTCGTGTTTGAACAGTGCCCTCACTTCATATACAGTATTTGTCCCTATTTCAAAGAATGTAATACTGGTATAGATTGCACATGAATAACTGGACTGTGACTGATGTTACATAACTTAGAGCTAGGACACTAATGCCccaagagaggagggatgggactGTTGAAGAACCAAGTCGGCAGGAAGAAGTTACTATTTTGATACTCTCTCACACATCCCGACCcagtctctgtgtttgcaccttGTGTTTGAGTAAGGTGGAGTTTGTCTAGCGCTACGCATTGAATAACTTGGATCAGGTGAGGGGAGTGCGTATTCTCACCTGTTCCTGGTCACATGTCTGTCACCTGATGTCTGTACCTGTGGTTGTTCAGGAAGGTCAACACCAGCAAGGTGATTTTAGAATGCCGGTAGCATCGATCCAACAGATTTGCCCAAAACACGAGACAGTTTCTCACCGAACCATAGCTGTGGGAAGTTGGGGTGCTgaaggtgctgcagcacccctgcCCACAAgctacttcccgcggctatgcaCCAAACTACAAATGCTTAACGTGAAACTGATCAGGCGAGTACTGCAGAACGTCTTCATTCCGATAGATTGTAGTTCTATTCTCTGTGTGATTAGTTGCCGTTGAGCTGTTGTGAAGTATATTTGGGAATTAACACTAAGGCTGTACTCAACATGTAAACAGTAATAGAAGCTAACATACTCCTTTGAGAGCAGATGGGGCACTGATGTGCATCATTTCTCATTGATTTTGGCTTTTGCTAGGGGAAACTAAATGTACTGGGAACAGTTGCCTTACTCCCCTCTAACCCCCTCTATTGAGCTGGACTGCAGTCTTGTCTTACTTGTAGAAATACCTAATGAGAATCATAAACACTGGATCTGTGATCAAACATCTGCTCAGAGCAGGTTATGTGAACTGAACTTCCACTCCCTATCATACTGACTCATTGACACTGTGAGGTACTACTCCATTCTCTGTTATGGTACACACGGTGTTGACGAGTTGATTTACTTTGTCTCTCATTCCAAACAGTTCTGTAACATTCAAAGCATGACGAGTGACATTTTGAATGGCCGAATTTTAGAAATCtgtttaatttatttttgttttaactACACAGGGCATTGGGATTGTAACCACAGCTATTTATTTTGTAATCATGTTTCAGCATAGCAATGAAGTCATATGTTTTCATTTGTGTAACTGATCCACTATGTTAATTCATGTTTGAAGTTCATGATCTCATCTATTCCTGGTAGGTACTTCTTCTTGTCCTATTAAAAGTAGTTTGATTAAAATGTTTTTCTGTACACGCAGTGTATAGGGGGGTAGATTATAACTCACTatgacagtcccccccccccccaatactgCGACTTCTTTTATTCCTGGAGAAACCCTCTATTTCAGAGAATACACAACAGGCTTCGGAATTATTGTTTTGTCagttacttttttttaaagataatgAGCAAGGATCTTTGCTTGCTAGATAAATCCTAAGGTATAGATTTGTACTGAATATTTTCAGTATTTTCTTATCAATGCTATATGATGTACATTTTTATCACATTTAATGAAAATGTTTTAAAGTAGTAAAGAAATGTATGAATAGATGCACATGTATAATTATTGATTCCATGAGCTGGAAAAATAAACTAATATGTAGCAAT

Function

NR:

description
partitioning defective 6 homolog beta-like

GO: NA

KEGG:

id description
K06093 PARD6; partitioning defective protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615995.2 True 4357 mRNA 0.46 4 48469219 48506892

Neighbor

gene id symbol gene type direction distance location
arfgef2 arfgef2 coding downstream 491 48432135 ~ 48468728 (-)
LOC110532256 LOC106572112 coding downstream 40783 48404006 ~ 48428436 (-)
trnag-ucc-228 NA coding downstream 51959 48417189 ~ 48417260 (-)
LOC110532255 LOC106572115 coding downstream 107024 48342605 ~ 48364617 (-)
LOC110532253 LOC106572118 coding downstream 168896 48291412 ~ 48300323 (-)
adnpb LOC106572109 coding upstream 4732 48511624 ~ 48519150 (-)
dpm1 LOC106572108 coding upstream 15289 48522181 ~ 48529491 (-)
LOC110532264 LOC106572106 coding upstream 27660 48534552 ~ 48570617 (-)
slc35c2 slc35c2 coding upstream 64774 48571666 ~ 48581164 (-)
LOC110532266 LOC106572105 coding upstream 78741 48585633 ~ 48588561 (-)
G812804 NA non-coding downstream 10833 48458055 ~ 48458386 (-)
G812551 NA non-coding downstream 149090 48319383 ~ 48320129 (-)
G812449 NA non-coding downstream 217208 48157768 ~ 48252011 (-)
G812412 NA non-coding downstream 377679 48088705 ~ 48091540 (-)
G812837 taf13 non-coding upstream 74386 48581278 ~ 48582776 (-)
G812891 NA non-coding upstream 100329 48607221 ~ 48607594 (-)
G812900 NA non-coding upstream 113502 48620394 ~ 48620623 (-)
G813173 NA non-coding upstream 128344 48635236 ~ 48636309 (-)
G813217 NA non-coding upstream 191563 48698455 ~ 48698681 (-)
LOC110532252 fkb1a other downstream 182789 48278174 ~ 48286453 (-)
LOC110531190 clcn6 other downstream 792570 47642136 ~ 47676649 (-)
G811300 NA other downstream 1287422 47178804 ~ 47181797 (-)
G810563 NA other downstream 2213501 46253514 ~ 46256922 (-)
zmynd12 zmynd12 other downstream 2278227 46187156 ~ 46200250 (-)
G812840 NA other upstream 1753 48508645 ~ 48509094 (-)
G813357 LOC106578276 other upstream 408543 48915435 ~ 48915704 (-)
G814020 NA other upstream 957065 49463957 ~ 49466762 (-)
G814157 edem2 other upstream 1228253 49735145 ~ 49736111 (-)
G815044 NA other upstream 1711464 50218356 ~ 50218697 (-)

Expression


Co-expression Network