Gene
RNA
| Item | Value |
|---|---|
| gene id | taf13 |
| gene name | taf13 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 48581243 ~ 48582509 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| taf13 | Predicted to enable protein heterodimerization activity. Predicted to be involved in transcription by RNA polymerase II. Predicted to be part of transcription factor TFIID complex. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human TAF13 (TATA-box binding protein associated factor 13). |
| description |
|---|
| Transcription initiation factor TFIID subunit 13 |
| id | name | namespace |
|---|---|---|
| GO:0006366 | transcription by RNA polymerase II | biological_process |
| GO:0006413 | translational initiation | biological_process |
| GO:0003743 | translation initiation factor activity | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| id | description |
|---|---|
| K03127 | TAF13; transcription initiation factor TFIID subunit 13 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036988202.1 | True | 1267 | mRNA | 0.43 | 1 | 48581243 | 48582509 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110532258 | LOC106572114 | coding | upstream | 177240 | 48400637 ~ 48404003 (+) |
| LOC110532257 | LOC106572113 | coding | upstream | 187144 | 48386767 ~ 48394099 (+) |
| snphb | LOC106572120 | coding | upstream | 321906 | 48224647 ~ 48259337 (+) |
| ntsr1 | LOC106572121 | coding | upstream | 422279 | 48104332 ~ 48158964 (+) |
| LOC110532248 | LOC106572122 | coding | upstream | 558053 | 47986339 ~ 48023190 (+) |
| LOC110531191 | LOC106566483 | coding | downstream | 33814 | 48616323 ~ 48617448 (+) |
| LOC118966185 | NA | coding | downstream | 36474 | 48618983 ~ 48620336 (+) |
| si:rp71-17i16.5 | LOC106572104 | coding | downstream | 43810 | 48626319 ~ 48636018 (+) |
| lamb2l | LOC106572102 | coding | downstream | 55028 | 48637537 ~ 48698384 (+) |
| lamb2 | LOC106572101 | coding | downstream | 116703 | 48699212 ~ 48747524 (+) |
| G812684 | LOC106572106 | non-coding | upstream | 39545 | 48538027 ~ 48541698 (+) |
| G812683 | NA | non-coding | upstream | 46372 | 48534571 ~ 48534871 (+) |
| G812613 | NA | non-coding | upstream | 145584 | 48426284 ~ 48435659 (+) |
| G812555 | NA | non-coding | upstream | 251416 | 48329596 ~ 48329827 (+) |
| G812382 | NA | non-coding | upstream | 294817 | 48278177 ~ 48286426 (+) |
| G812951 | NA | non-coding | downstream | 159293 | 48741802 ~ 48742338 (+) |
| G812966 | NA | non-coding | downstream | 213794 | 48796303 ~ 48796775 (+) |
| G813047 | NA | non-coding | downstream | 327667 | 48910176 ~ 48910471 (+) |
| G813052 | LOC106575331 | non-coding | downstream | 332767 | 48915276 ~ 48915608 (+) |
| G812688 | LOC106572106 | other | upstream | 10650 | 48545454 ~ 48570593 (+) |
| G812143 | NA | other | upstream | 598942 | 47982001 ~ 47982301 (+) |
| G809685 | NA | other | upstream | 2445511 | 46134731 ~ 46135732 (+) |
| G807841 | NA | other | upstream | 4128166 | 44442662 ~ 44453077 (+) |
| G807677 | NA | other | upstream | 4385202 | 44195715 ~ 44196041 (+) |
| G813071 | NA | other | downstream | 377240 | 48959749 ~ 48959991 (+) |
| G813074 | etbr2 | other | downstream | 420810 | 48962187 ~ 49006710 (+) |
| G813139 | NA | other | downstream | 532628 | 49115137 ~ 49115618 (+) |
| G815428 | NA | other | downstream | 2213705 | 50796214 ~ 50800381 (+) |
| G815610 | NA | other | downstream | 2495938 | 51078447 ~ 51078942 (+) |
