LOC110531191 (LOC106566483)


Basic Information

Item Value
gene id LOC110531191
gene name LOC106566483
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48616323 ~ 48617448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986950.1
ATGCTCACCATCCTCTCTTTGGCTCTTAACGGATTCACTTTGTTGGGACTTGGACGCTCAGAGGACCTGTCTTGGGAGCCACGCTATGCCCTGTTGAAGAACCTGATTCTGAGTGACATTGTGCAAACCATCAATTTGGGCCCGTTTGTGACTCACTGCTTATGGCAGAGAAGGACAATGAACTTCGACACCTGGTGCCTCATCCAGTATTTCACAGGCAGCACCTGTATCTTCTGCACACTCATCACCATCACCTGCATGGCCATTGAGCGATACCTGTATGTGTGCCATGCCATCCACTACCTGTCCATCCTCACCCCACTGCGCCTTCGCCTCACTATCAGCCTCACCTGGGTCTTGTCCATCAGCGTTGGCTGCATTAACATCACCCTACTACACCTGGGGGAGGGGGGATATGGCACAGCAACCTCTGGACTCATATGTGAGCCTGACACAGTGGAACGCCACATGGGTTTCCCCAGGGCAGCGGCTATCACCCGCAAGCTGGTGGGCTTCATCATCACCCTGCTCTGCCTCCTCAGCTACTTCTTTGCCTATGTGCGGATGTACCAGGACGCCCGCAACGCTGTGGTGCCCTTCAACACGGTGAACACGCGGGCGCGCAACACTGTGCTTTTCTACTGTGGGATGTTGTTCTTGCAGCTGCTCCCTATGTTCCTCAAGATCACCTCAGATGCTCTGTGGGAGCTGGAGGGCACAGGGGCCATGATGGCTCCCCTGACGACTCTCTCTGGGGCTGGGACCTCGCTGTCGGCCGGCACCCTGCACATTTCCCTCCTGGCTCTCATCCTGGTGCCTCCCTGCATCAACCCCCTCATCTATGGCCTCCGCAACTGGGAGGTGCGTCAGGCGTTGCCCAGACTCTTCTGGTGGAAGGGTGAACGCCCTGAGCTAGACATGGACAGGACTTGTGTCTCCCAGATATGGCAACTGAGGAGAGTGTAA

Function

NR:

description
olfactory receptor 5AN1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986950.1 True 966 mRNA 0.56 2 48616323 48617448
Loading

Neighbor

gene id symbol gene type direction distance location
taf13 taf13 coding upstream 33814 48581243 ~ 48582509 (+)
LOC110532258 LOC106572114 coding upstream 212320 48400637 ~ 48404003 (+)
LOC110532257 LOC106572113 coding upstream 222224 48386767 ~ 48394099 (+)
snphb LOC106572120 coding upstream 356986 48224647 ~ 48259337 (+)
ntsr1 LOC106572121 coding upstream 457359 48104332 ~ 48158964 (+)
LOC118966185 NA coding downstream 1535 48618983 ~ 48620336 (+)
si:rp71-17i16.5 LOC106572104 coding downstream 8871 48626319 ~ 48636018 (+)
lamb2l LOC106572102 coding downstream 20089 48637537 ~ 48698384 (+)
lamb2 LOC106572101 coding downstream 81764 48699212 ~ 48747524 (+)
usp19 NA coding downstream 130211 48747659 ~ 48782739 (+)
G812684 LOC106572106 non-coding upstream 74625 48538027 ~ 48541698 (+)
G812683 NA non-coding upstream 81452 48534571 ~ 48534871 (+)
G812613 NA non-coding upstream 180664 48426284 ~ 48435659 (+)
G812555 NA non-coding upstream 286496 48329596 ~ 48329827 (+)
G812382 NA non-coding upstream 329897 48278177 ~ 48286426 (+)
G812951 NA non-coding downstream 124354 48741802 ~ 48742338 (+)
G812966 NA non-coding downstream 178855 48796303 ~ 48796775 (+)
G813047 NA non-coding downstream 292728 48910176 ~ 48910471 (+)
G813052 LOC106575331 non-coding downstream 297828 48915276 ~ 48915608 (+)
G812688 LOC106572106 other upstream 45730 48545454 ~ 48570593 (+)
G812143 NA other upstream 634022 47982001 ~ 47982301 (+)
G809685 NA other upstream 2480591 46134731 ~ 46135732 (+)
G807841 NA other upstream 4163246 44442662 ~ 44453077 (+)
G807677 NA other upstream 4420282 44195715 ~ 44196041 (+)
G813071 NA other downstream 342301 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 385871 48962187 ~ 49006710 (+)
G813139 NA other downstream 497689 49115137 ~ 49115618 (+)
G815428 NA other downstream 2178766 50796214 ~ 50800381 (+)
G815610 NA other downstream 2460999 51078447 ~ 51078942 (+)

Expression

LOC110531191(LOC106566483) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
End of interactive chart.

LOC110531191(LOC106566483) Expression in each Bioproject

Bar chart with 6 bars.
LOC110531191(LOC106566483) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5.
End of interactive chart.

Co-expression Network