XLOC_026721 (shisa9b)


Basic Information

Item Value
gene id XLOC_026721
gene name shisa9b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 46043406 ~ 46115232 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052027
GCTCATTGCGCTCCAGACGCTCCACGCACCCGAGTGCGCAAGACCGCTGCTGATAACGATCGGTTATAATAGTAGAAAAACACAATAGTGTTTATTTCAATGCCACACTTGAAGCGCTAGGAatcatacacattcacacatttgGACGCTCCAAAGCCTCTATTAACCAGCCGTGGCGCAGAAGTATCCTCAAACATGAGCAGCATCATTTCGGATGGCGGTGATGTTCTTGATGGAGATCTGCGTCCTGACACTTCATGACAAAAGACACACAACAACTCTATCTTTCAGCGTCCGATCAACCGTGgcaaagaagagaagagaagagcgCAGGATGAAAAGCACTGGCTTACTGTTGGGCTACTTTTTAATGAAAGTTCTTGTGTGCGACGCGGAAGGAGAGCCAGGCAAAAGCCTGGATGGTGCGGTGACAGCGTCCGGGTCCAATGACTCCAGAGACGGGGAAAACGGCCTCTCCGAGACCCCTCACACTGAGGACAGGTGTCGGGGCTATTACGATGTGATGGGTCAGTGGGATCCTCCATTCGTGTGCCGGACTGGTAGTTACCTGTACTGCTGCGGGACCTGTGGATTCAGGTTCTGCTGCGAGTTTAAGAACTCCAGGTTAGATCAGACCACCTGCAAAAACTACGACACGCCGCCGTGGTCCATGACGGGCCGACCACCGCCGAAGATGATGGACCAGCACGACCCGACAAAGGATAAAACCAATTTGATTGTGTATATCATATGCGGAGTAGTTGCTATCATGGCGCTGGTTGGGATTTTCACCAAACTTGGCTTGGAGAAAGCGCATCGACCCCACAGAGAAAATATGTCCAGAGCACTGGCCCAGGTGATGCGCCAGACAGCTCCAGGAGAACATGTGGAGAGAGAGGAGAGTTTGGCGGTGCATGGACAACCCTACGAAAACCTGCAGGCCCGAGCAACAGGAAACAACCTGCAGAGTGCCCAGATGAACAGTGTGGGTCCCAGTTCATCTATGATGCAGGCCATGACCCCATACCCTGCTCTGGGACAGGTGCCAGTGGCTCACCCCTATGAGCCGTCACCAGCTGCAAAAGAGCTCAACAAGTACGCCTCGCTCAAGGCTGTTGCTGAAAAAGCCAACGAAAACTTCTACACCAACAGACGGCACTTGGCCGACCTGGCAGCGAAAGGCACTCTTCCCATGCACTCAGTGAGTCTGGAGCAGGAGCCCACCAACCCATACAGCCCAGAGCTGCCCTGCCAAAAGCAGAACGGACACAAGTCCAAAAGCACCAAGGTCCACAGCTCCCACCCGCTGGCTTATGGCTCCAACACAATCGCCAACCCCGGCAGGATGAGTAGCTGGGAGACTACAGAAACACTGGGCCGCCGGCACACGTACGGCCCCAAGAAGCACAGCGCCACAATGGAGCAAATGAACGAGTTGACGTCCGCCCAGAGCCAACATTACCTGCCACCACATCCGTACTTCGTCACCAACAGCAAGACTGAGGTGACTGTGTGAACGTGGCCGAACCAACGGCTTTATCGAGCCCAGGCTTGAGTGGACGAGGAGAACGAAGATAACCAGAGACGCCTGacggaggaagaagaagaagaagaagtatgGATTAGGAGCCCATCCTGCTGGAAGGATTGGCCGATTGGGTCTGGCTCGAGATctgcatggctgtgtgtgtgctgtttgtcTTAGAGCGGTTGGGTTGTGCATGGACCAGGCATGCATTGGCATCATTTTCGAAAGGCTAAGGATCTCTTTCTGTGTCCATTCAGTCAcaatgcaaatgaataaatgacctgTTGTGATGAGTCTGTTGCATTAAAGTGATGAGGAACCCACTGAAAACCAATCGTACTTGAGGAAATCACTGTCTAAAAgcacttgtttattttcttttcttgtaTATAACAGAATGTCAGAAGCTTCCTCAGATAATCAGAGAACATCGATTTGGAAGATGTTAGGACAATTGGGGTTTCTAGTTCTTCTCATCTCAACCAGACTTTTTCCAGAGCGTGTGcaccaaaaaaagagaaaacaacaagaaaaaaaaaaaaaaaaa

Function

symbol description
shisa9b Predicted to be involved in regulation of AMPA receptor activity and regulation of short-term neuronal synaptic plasticity. Predicted to be located in cell projection; plasma membrane; and synapse. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in dendritic spine membrane; postsynaptic density; and postsynaptic membrane. Orthologous to human SHISA9 (shisa family member 9).

GO:

id name namespace
GO:0048172 regulation of short-term neuronal synaptic plasticity biological_process
GO:2000311 regulation of AMPA receptor activity biological_process
GO:0032591 dendritic spine membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0032281 AMPA glutamate receptor complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-105 Predicted to be involved in regulation of AMPA receptor activity and regulation of short-term neuronal synaptic plasticity. Predicted to be located in cell projection; plasma membrane; and synapse. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in dendritic spine membrane; postsynaptic density; and postsynaptic membrane. Orthologous to human SHISA9 (shisa family member 9).

Ensembl:

ensembl_id ENSDARG00000052642

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052027 True 2075 mRNA 0.51 4 46043406 46115232

Neighbor

gene id symbol gene type direction distance location
XLOC_026720 igfals coding downstream 195149 45845007 ~ 45848257 (-)
XLOC_026719 NA coding downstream 199706 45832077 ~ 45843700 (-)
XLOC_026718 si:ch211-66h3.4 coding downstream 220492 45818626 ~ 45822914 (-)
XLOC_026717 h3f3b.1 coding downstream 265283 45776370 ~ 45778123 (-)
XLOC_026716 NA coding downstream 499955 45539786 ~ 45543451 (-)
XLOC_026722 NA coding upstream 37895 46153127 ~ 46217473 (-)
XLOC_026723 CR450782.1 coding upstream 109357 46224589 ~ 46227010 (-)
XLOC_026724 snrnp25 coding upstream 262073 46377305 ~ 46379900 (-)
XLOC_026725 cdip1 coding upstream 272628 46387860 ~ 46410387 (-)
XLOC_026726 NA coding upstream 347353 46462585 ~ 46463256 (-)
XLOC_026709 NA non-coding downstream 1707553 44332747 ~ 44335853 (-)
XLOC_026708 NA non-coding downstream 1919036 44111545 ~ 44124370 (-)
XLOC_026703 BX682557.1 non-coding downstream 2153963 43878456 ~ 43889443 (-)
XLOC_026727 CR385086.1 non-coding upstream 642379 46757611 ~ 46762706 (-)
XLOC_026731 NA non-coding upstream 1014800 47130032 ~ 47131111 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_00893353_00931079 SHISA9B coding CI01000046 null 893299 ~ 932443 (+)