si:dkey-32e6.3 (LOC106572098)


Basic Information

Item Value
gene id si:dkey-32e6.3
gene name LOC106572098
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48782956 ~ 48789745 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616021.2
GAAGAAACGGCGTTAAAGAATAAGGaagtaaaaaaacattttctgacGTCGACGGAAAAGCCGGAGTGTGGTATTTATATGTGACTAGTTGTACCAACTTAGACAGCtcttttaaaatatgttttgcaAAAAGAACCTGTTTTGACAAGTGTAATAGCTGTCTTATAGccatgtagctagttagctacaaatACAGCTACTGTTGTGGACGAAGAGGTTCTGGTTTCAGTCACTTGCCTTAACCCTCTGGCTATTATCAATGACAACTTGGTTAGCAAGCCAACGTTAGTCAAAGAAAATCAGGTTTCCACAACCGATAATTCGAGAGTGGAGCCACATAATGGCATACTGCGATAAGACAGGTGATCATCCCTCAGCTTCTCTAAACAATGAGGACAGTCGTAATGGACATGACCCGGCGACAGATAAGCACCCGACTCCACACTCCAAAGGAAATGCGAACGATTGCTGTGCCACTGAAGAAGCCCGAACAGTGTCTGTCCCTCATGGGTTGTGTGTAAAGAAGAAAAAGCTTGTCCTTCACGTTGACCTCAATAACACCATCTTGGTGTCTGATGCTGTGACAAGTCAAGGAACTATTGCAGCTTTGGATTACTTTATTTCCACAGTGACATGGGGACAAATGAGTAAACAAGGTAAGTGGATGTGGATGAGTGACTCACCTTCCCTACTTCCACCATGTGAGGGCGCTGTCAGCTACTACTcccagtttggccgggtggcagGTTTCACCAGCTCCACTGCAGGTCGGCGGTTCCGGGGCGTGCTGGATGAGCACCTGGCGATGCTGCGATGGCCGAAGGAGCTGAAGGGGGACAAGGAGCTGGCTGTGAAGGGGGAGGATGGGCAGCTGTACCACTGGATCTTGCCCTCCTTCTTCCAGCTACTGAAAGACCTGGTGACGGAAGGGAGGGACTTTGCTATCCTGTTCCGCACTTTTGGCTCTGACCTTCCCCGCGTGCTGTCTGCAGTGTCCCGTGCCCTCACTCAGGGCTCCCACCCACTCTTCCCTGACCTTCCAGCACTTAAGCTGAGTGTGAATGAGACGCCAGGCCAGATCCGCTGCAGTAAGAAGGGGGCGGTCCTGACCCGGGCAGAGGAGCGTCTGTCGACCCGTGACGGGGAGCGagccctgtaccagtacctcAGCTCTGTCCAGTGCCTGGGGGGCTTCCAGGACCATTTTGACTGGTGGGCCAGGAACACCTACTCCATCCTGGGAGGGAAACCTCTGTGGGTGGACCCCTTCGACCAGGATGTCCAGCACATCTTCATCGATGACAACATTCGACAGAATGACAAAGACACCATTGTCCACCCAAAGGTGTTTCTAGACCGAGACGGCTCAGAGACCCGCACAGCCTCCACCTCAGAGCTGTATGACCTCTGTCTGGTCCAGAACGACCTGCTCAAGGCCATCTCAAACCCAGAGTACTTCACCCAGCGCATCAGCATCTGCCAGGAGAACTATGACAGGAACCTTCAGCAGGGGGCAGGCTACAGTGGTTTGTCTGTAGCCTAGAGGTCCAGGGTGAGAAGGGGTTGGGACAACTCAGGTCTGTAGCCTAGAGGTCCAGGGTGAGAAGGGGTTGGGACAACTCAGGTCTGTAGCCCAGAGGTCCAGGGTGAGAAGGGGTTGGGACAACTCAGGTCTGTAGCCCAGAGGTCCAGGGTGAGAAGGGGTTGGGACAACTCAGGTCTGTAGCCCAGAGGTCCAGGGTGAGAAGGTGTTGGGACAACTCAGGTCTGTAGCCCAGAGGTCCAGGGTGAGAAGGTGTTGGGACAACTCAGGTCTGTAGACTGGAGGTCTAGGGTGAGAAGGGGTTGGGACAACTCAGGTCTGTAGCCTAGAGGTCCAGGGTGAGAAGGGGTTGGGACATCTCAGGTCTGTAGCCTAGAGGTCCAGGGTGAGAAGGGGTTGGGACAACTCAGGTCTGTAGACTGGAGGTGGAAGGTAAAGGGGAGCTCCTGCAGTTGCTCCAACTCGTCCTCTAAGGTCAATATTCTCAGGGTGTGTGACACTGGCAACCAATATATTGCATATGTAGAAGGCATTATTTTGTTGCTGTTTTTAAATTCTAATATATATTTAAACAAAAAAATGGTAATTGATATAAAGGCATTGTTTATGTATACCAAAATGTGTTCAGAAAAGACTTGAATGGTCATACTTGAATGTTTCTAATAttacaaagagagagagctgtgtggtTGAGCAGTAAGACTAACTGTTACAACTTAAACCATACTCTAGTCTACAGACAAATTACTTTAATATTAACCACACTTAGTATTACTGTTTGACTATTTATCATGGCAAAACAATGGATGAGTTTGACCTAATATAATTTGGGTTTATGTGGTTTGGAGTTTATTTGCACTGAAAATGACTTTACTTTCTTTGAAGCGCTCTCATGTGGATAAAAAGTATATATCCAGGGAATGTGTGTCACGCTTTCTCTTGAAGGTTTGTCATAGTGGTGGATGAGGTGTGTGGCCCCGTTACAATGTAAAGCTCTTTGGGTGTCTAGAAAAGCGCTATACACCGACTGTACAAAACACTAAGGACACCTTCcctcggggcatggactctacaaggtgtcaaaagtgttccacagggatgctggcccatgtgaacgccaatgcttcccacagttgtcaaattttctggatgtcctttgggtggtggaccattcttga

Function

NR:

description
uncharacterized protein LOC110532272

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616021.2 True 2721 mRNA 0.49 5 48782956 48789745

Neighbor

gene id symbol gene type direction distance location
usp19 NA coding upstream 217 48747659 ~ 48782739 (+)
lamb2 LOC106572101 coding upstream 35432 48699212 ~ 48747524 (+)
lamb2l LOC106572102 coding upstream 84572 48637537 ~ 48698384 (+)
si:rp71-17i16.5 LOC106572104 coding upstream 146938 48626319 ~ 48636018 (+)
LOC118966185 NA coding upstream 162620 48618983 ~ 48620336 (+)
klhdc8b LOC106572099 coding downstream 41324 48831069 ~ 48935332 (+)
LOC110532277 LOC106572094 coding downstream 198697 48988442 ~ 48994535 (+)
LOC110532278 LOC105027762 coding downstream 204890 48994635 ~ 48998285 (+)
LOC110532282 LOC106572092 coding downstream 223418 49013163 ~ 49060073 (+)
LOC110532283 LOC106572090 coding downstream 273943 49063688 ~ 49081175 (+)
G812951 NA non-coding upstream 40618 48741802 ~ 48742338 (+)
G812684 LOC106572106 non-coding upstream 241258 48538027 ~ 48541698 (+)
G812683 NA non-coding upstream 248085 48534571 ~ 48534871 (+)
G812613 NA non-coding upstream 347297 48426284 ~ 48435659 (+)
G812966 NA non-coding downstream 6558 48796303 ~ 48796775 (+)
G813047 NA non-coding downstream 120431 48910176 ~ 48910471 (+)
G813052 LOC106575331 non-coding downstream 125531 48915276 ~ 48915608 (+)
G813060 NA non-coding downstream 140471 48930216 ~ 48930427 (+)
G812968 NA non-coding downstream 149414 48939159 ~ 48939587 (+)
G812688 LOC106572106 other upstream 212363 48545454 ~ 48570593 (+)
G812143 NA other upstream 800655 47982001 ~ 47982301 (+)
G809685 NA other upstream 2647224 46134731 ~ 46135732 (+)
G807841 NA other upstream 4329879 44442662 ~ 44453077 (+)
G807677 NA other upstream 4586915 44195715 ~ 44196041 (+)
G813071 NA other downstream 170004 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 213574 48962187 ~ 49006710 (+)
G813139 NA other downstream 325392 49115137 ~ 49115618 (+)
G815428 NA other downstream 2006469 50796214 ~ 50800381 (+)
G815610 NA other downstream 2288702 51078447 ~ 51078942 (+)

Expression


Co-expression Network