klhdc8b (LOC106572099)


Basic Information

Item Value
gene id klhdc8b
gene name LOC106572099
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48831069 ~ 48935332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988215.1
GAGCTTAGGGAAGCTCCTCCAGGACCTTTTCTGCCACAACACAACTCCCCGCTTCTCCTCCAATCACCCCTGGACTACACCTACCACTGAGGAAGAGCTTCAGGAGACTACCGGGAGAGTCAGATTCCTGCCCCTGGAATACCAACAAGTGTGCATCCTTTTACACTTTTCATCCTTAATTTCAAATCCACCTACTCTGAttacgaggggggggggggaagcgtTTGCTAGCATCTCTGGCCTCTTGGAATCGATCCTGTGGGAACTGTTCTAGTTTTGAGCCTGCATTCCTTCAGCTGACTCGGCCCATCTGGTGTGTTTCTACTGAACACTTTCAGGAACTAACACAAATCTAGTACTCTGCTGCAGGGATACATTGGTACATTGTAACCTAACAACAAGCCCTATCAgaagaggtaaagaggagaggcCCATCTTGGAGtgtgcccactgggcacagatgtcaattcaatgtcttttccacgttggttcaacctAATTTCATTGGAATGACGTGGAAGCAACAttaattcaaccagtgtgtgcccagtgggtggtgtGTTAGAGCTAGTGGAAGATACACCTGTGGACTTATAAGAGGCTCTGCAGAAGAAGACCTGATCCTTCCTGAACTGTAAAAACACAGGGTCTCTCTGAAGAGATATCTGTCCATCTTTTCTCTCTGGGTGGAGAAACCCCTTCCTGCACTCAGCCAGCGTCAGACCTCCGGGCCTCTAACGATTGCTCTACATCTCCCcatatctgtctatctgtctgttttctctctatctttctttttCACCTGTCTACTTCACTTTGccctctctcaatttctctcctcctccccattcaTTCTCTTTTTCTCCTTTTCCACAACACCCATTTCTGTCACatgctctctctgttcttctaATTAACGATGCTTGTGTACCAATTAGACATTCAGTCGGTGCGACCCGAACCCTGAGAGCCCCAGTGAAAGCAGGGACCTTTGGTGTACTGCTGGTGTGTGGATCGTGCTGTCCTAgacctccacccccccaccccccagtacCCCCTGTCATTGGCCTTGGCTGTAAATGTCACGGCGCCGGCTGCCCACGGCTGAATCGTCCACAGGGTCACAGGGCTGGCTCTTTTATTTTCCACAGGCCAGGAATCTCTGTGAGAGCCTCACTGTGTCTCAGGGGAACAGAAGTTACTCCTCAGCCCCAGTTGGGCCCTGACAGCTGCCTTCTGGAATTGAGTGTTTTGGTCTAATTAGAAACTTTCTGTCTGACCTCAAGAGCTTATTCCTATTATACTTGGAGGCAGTTTTCATTTGAAGCCTTTGTTCGGTTTTGGTTTTTACCCTCTTCACCAGATTCAAATAACTGCTGAAGCCCAGGATAATTGCCTTTGGCTGAGAATGTGAATGCAGGTTCCTTCCAAGTCATTGCAGTGGATTATCATGAATTATCATTACCGTGAAGGTCACACCCTGTAGGTTTTTCTCCTTCGTTGTTTGATCCAGCTCCATCTTCCACTTGACGCTAACACTTCACAGGGATTGTGCATAAAGCCGGGCACACCTTCTGCGTGTGTTCGCTATAGGAAGCCTTCAAAAAACCTTGTTTTAGTGTATTCCTCTCTAGAGAGCAGCGCACAGCTGCACAACAATCAACTGTGGTGATTTTTTTGCCAAAATAAAGGCCCTTGAATGGAGTAAAATGAGAAAAAAGGGCAGATGGCAACCCTGCTTTAAAACATCAACAAATTCATTAATACAACATTGGGTGGTAGAGGCATTTGGCAAAGTGCTGAAgtagcctctctctttctctgtcacgtTCCCTCTCTCACTTGAGACAGGGGATCAGGTAGCAGAGCAGAAAGACCGGAGGTTGATCCGCAGTGCCCTTGCTTCTCtgtttgttgtgtttttgtttgtccccCCACCCGTCCGTGGATGTAATGACCCATCACCTTCGTCAGCCTCAGGAGAGATGCCTATACTCGAGATGGCAGTGAGCCTAGTCAAGTCCCTGTACTGGGAAGTGTTCCCCCCCATGTCCACGTGCAGGGTCTACTGCACCCCTGTGTTCCATGACGGCCTGCTCTATGTGCTCGGGGGCTGCAGTGAGACAGGCCTGCCACTAGACACTGCCGAGGTGCTGGACATAGAGAGCCAGACATGGACCCAGTTACCTCCACTCCCTACAGCCCGTGCGGGGGCATCAGCGGTGGCCCTGGGGGGTCAGGTGATGGTAATGGGGGGCATGGATGGCCAGCAGAGCCCCCTGTCCTCCGTGGAGGTCTACAACCCTGACGAGGGCAAGTGGGAGAGGAAGGCCAGCCTAGGACAACCCTCCATGGGCATCACCTCATTAGAGAAAGatgGGAAGGTATATGCGCTAGGAGGGATGGCAGCTGACACGACGCCCCAGGCTCTGGTGAGGGTTTATGAGCCGGAGAAGGACCAATGGCAGCCCCTGACCTCTATGCCCACGCCCCGCTATGGAGCCGCCTCCTTCCTGAGAGGCAACAAGATCTACGTGCTGGGTGGGCGTCAGGGCAAGCTTCCTGTCACAGCCTTCGAGGCCTTTGACCTGGAAATGAAGAGCTGGACGCATTACCCCTGCATCCCCAGCCGCCGGGCCTTCGCCTGCAGTGCTGCTACCGAGCGGGGCTTCTTCAGCCTGGGAGGGCTCCAGCAGCCTGGCCCCCACAACTTCTACTCCAGACCACACTTCGTCAGCACAGTGGAGGAGTATGACCCAGAACAGGGTATCTGGATGAAACCAACCCGAACCTCCAGGATGAGGGTTAAGAGAGCAGACTTTGTGGCCGGATGTCTCGGTGGAAGGGTCATCGTTGCTGGTGGACTAGgtaaCCAGCCTTCGCCCCTGTCGTCGGTTGAGAGCTACAATCCTGTGAAGCGGAGTTGGGAGTACGCTGCCCCCATGCCCAGTCCCCGCTGCTCCTGTTCACCCCTGCAGACCCCCAACATGCTGTTTCTCATCGGGGGCGTGGCCCAGGGACCCAGCAACGCCGTGGAGGCTCTTTGTCTCAGAGAGACTGTgtgacacacacacggacagacgAAAGACTTAATGCAAGCAAATTCAATGTGTGCAGGTGATGGACACTCATACAGACTTTGTTTTTGCCTTTGAACCTTGCAGTTGGTGGGCAAGATCAAGTACAGTGACCCTGACACCTGTTTCTTTCAATGgagaaacaaatacatttctacATCTTAGAGACATAAGAAGAGTCAAATAAATAAGCAAAAAACAACACCACAGAcgcatagacacactacacaaaAGACGCCTTTGAACAGTACAGCATTTTTCTGGAAAAAAGCAGGGTACTTTTCTGGAAACTAAAGGAACTACGGGCCATATCTGTTTCACTACAACAGTCAGGCTGCATTGGCTTGTTAAAACACTTTTCTATCACCTTTAAAAAAGCAGAGAGTTTAGGATATAACATTGAGGTATTTGTCTGTTTTGGTACCTTCACAGCCAGGTGTGTGTGAATATAGCACAGCTATACACATGATGTTCAAATCCCACACCATGAATACCACCTCTAGAATGGCCAGGCCAATCCCTGCACTGTAGCATCCAGAGACAAGAGTGCTTTGGCACTAAGCAACATTTCCCTTTTTAAGAGAAAAATATACGTATATATTTTACCTCAAGAGCTTTGCAATGAACGACATATGAACTGAAGGCAGGACAAAGTGCATGCTCAGAAAGTGTGTTTATTTCAGATAATCCTTAGGTGGCGTCTTAAAAAGAGAGCAATGGAAAGAGAGAAATTGGGAAGTGTGTTTTTAAATAGAAAATCGTAAATGGAAACTTCACCGCTAGACAATATTTGGAGTTTTTCCAGTTCCCTGCATAATTATGAGTGATGAGcggtgtttcagacataattatgagtgatgagaggtgtttcagacataattatgagtgatgagaggtgtttcagacattatgagtgatgagaggtgtttcagacataattatgagtgatgagagg
>XR_005053268.1
AGTCATATTTCATATTCTGCCATAGTTAACGTGTTTTCCCACCATGTCACCTGCAGCAGTTAAGAGTGTCAATTGAATGTGTGGGTAATATGTGTGGAATACGGATTGGCTAATTGTGTAATTATAGGTCCCTCCCACCAATTTGAGTTGATTGAATACAGGTGTATATGTGTTTGGGGGAGAAAGGCAATTGGAAGATGGGGGAGGGTCTTTTAGAACTTAGTAGGGCTCTTTTTCTTTCTTCCCCCCCTCAGGAGTACTGAGTCAGGGAAGAGTATTTCATAATGTGGAGCTAATGTTGTAAACCGTGATTGACCTTAAATGCACCTTAAAGGTATCTGGATGAAACCAACCCGAACCTCCAGGATGAGGGTTAAGAGAGCAGACTTTGTGGCCGGATGTCTCGGTGGAAGGGTCATCGTTGCTGGTGGACTAGactaCAGTCTACTCCCCCAGCCATCTGGATGGATGCAACATGCTTCATAATTCCACCTGTGGCTCAGACTGAGAGGCAGATCCCATTGCTAAACTAGACAgacggaccccccccccccccccccccagttcaagACGACAACACAGCTATCTCGCAGGGCCCTAGTCTTAGACACGTTTTTCTTATCATCAATTTCTGTCTTATCGTTGAGTATATAACCTTACTGGAGGGTGGAATTAAAAATGCCTTTATTTAGAATAGCACTTACATGCCTATTTCTCTTTTTTAGTTTTTGTGTGTAATCCcagaagtgtttgtgtgtgtgctcatgtgtgACAGAGTGAAATAGGTTGAGTGTGTTTCACATTGTTCAACAGTAGGTAGTATAGTTGTGTTAGTTTGATCATGTGTGTATGTCAGAGGACCAAGATCTACATGTTAGACTTCCTTCCATGTatcccattccagccattacaatgaaacagtcctcctatagctccttctctggtgtgtgtgtgtgtgtgtgag

Function

NR:

description
kelch domain-containing protein 8B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988215.1 False 4032 mRNA 0.49 5 48831069 48935332
XR_005053268.1 True 964 mRNA 0.44 3 48909280 48933756

Neighbor

gene id symbol gene type direction distance location
si:dkey-32e6.3 LOC106572098 coding upstream 41324 48782956 ~ 48789745 (+)
usp19 NA coding upstream 48330 48747659 ~ 48782739 (+)
lamb2 LOC106572101 coding upstream 83545 48699212 ~ 48747524 (+)
lamb2l LOC106572102 coding upstream 132685 48637537 ~ 48698384 (+)
si:rp71-17i16.5 LOC106572104 coding upstream 195051 48626319 ~ 48636018 (+)
LOC110532277 LOC106572094 coding downstream 53110 48988442 ~ 48994535 (+)
LOC110532278 LOC105027762 coding downstream 59303 48994635 ~ 48998285 (+)
LOC110532282 LOC106572092 coding downstream 77831 49013163 ~ 49060073 (+)
LOC110532283 LOC106572090 coding downstream 128356 49063688 ~ 49081175 (+)
LOC110532284 LOC106572089 coding downstream 150492 49085824 ~ 49097702 (+)
G812966 NA non-coding upstream 34294 48796303 ~ 48796775 (+)
G812951 NA non-coding upstream 88731 48741802 ~ 48742338 (+)
LOC118966185 NA non-coding upstream 211011 48618983 ~ 48620336 (+)
G812684 LOC106572106 non-coding upstream 289371 48538027 ~ 48541698 (+)
G812683 NA non-coding upstream 296198 48534571 ~ 48534871 (+)
G812968 NA non-coding downstream 3827 48939159 ~ 48939587 (+)
G812969 NA non-coding downstream 6867 48942199 ~ 48943429 (+)
G813074 etbr2 non-coding downstream 26855 48962187 ~ 49006710 (+)
G813076 NA non-coding downstream 32432 48967764 ~ 48975385 (+)
G813099 NA non-coding downstream 76002 49011334 ~ 49011612 (+)
G812688 LOC106572106 other upstream 260476 48545454 ~ 48570593 (+)
G812143 NA other upstream 848768 47982001 ~ 47982301 (+)
G809685 NA other upstream 2695337 46134731 ~ 46135732 (+)
G807841 NA other upstream 4377992 44442662 ~ 44453077 (+)
G807677 NA other upstream 4635028 44195715 ~ 44196041 (+)
G813071 NA other downstream 24417 48959749 ~ 48959991 (+)
G813139 NA other downstream 179805 49115137 ~ 49115618 (+)
G815428 NA other downstream 1860882 50796214 ~ 50800381 (+)
G815610 NA other downstream 2143115 51078447 ~ 51078942 (+)

Expression


Co-expression Network