LOC110532277 (LOC106572094)


Basic Information

Item Value
gene id LOC110532277
gene name LOC106572094
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48988442 ~ 48994535 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616024.2
tgtttctcactgtctctatctctctctccccctctctctctctttctgtttctcacggtctctatctctttctccccctctctctctctttctgtttctctctctcactttccagTTATTACTTGTTTCTTCTTGCCCTGGTTGGTTCATGTCAACAGCAGATATTGAACTTGTCTTTGGATTATTCTGACACATCGGCAGCCCAGCATTCAGgtccgTTTTCACTCTATGAGCAGATGTCAGTAGAGTATGGTTGTATGGTATCCTTCTAAACCTCCCAGTCGTTCCACACACCACCATGAATGAGTCAGTAGAATCCCCATCATTATCACAACCTGTGGACCAGGAACAGTCATTCCCCTGCCCTGCTGCCACAGCTCCTCGCAAACCATTCCAGCtccaggagagACGGGGCTCCAATGTGTCCCTGGTGCTGGACGTGAACAGTCTCAGCCTGGGTGCGGTGGAGCCCTTGTGCTCCATCTCCACCCCCAGAGAGACCCTCCTCCACCTGCTGAGGACCTCAACACGCCCTCTGACCCCCTCTCAGCTGCAGGAGGCATCTGACGAGACCAGCAGGCTGAACTCAGAGTACCAGAAGATCCCTCCAAACTTTGTCAACCCTGCAGAGCTGGACATTCCAGGACACGCCTTAAAAGACAGATACAAGACCATACTGCCAAATCCTGAGACCCGTGTGTGTCTGAGAAACCCTGCAGCAGAGGAAGCGGGTGAAACTGAGAGATACATCAATGCAAACTACATAAAGGGTTACAACGGTGCACCCAGAGCCTACATCGCCACCCAGGGCCCCATGCTCAACACTGTGCATGACTTCTGGGAGATGGTGTGGCAGGAGGGATCCACCACCATTGTCATGATCACCAAGCTAAAGGAGAAGAACGAGAAGTGCGAGCTTTACTGGCCAGAGAAGGACGGCAGCTATGGCAGATTTGAGGTCAGAGTGTCCATTGTGAAAGAATGTGATGGCTACACCATTCGAGATATGATTATACAGGTGGGCTCAGAGAACAGGCAGGTAAGACACTACTGGTACTCCACATGGCCAGACCACCAGACCCCAGACTGCACTGGGCCCCTGCTCAGACTGGTGGTGGATGTGGATGAACACAGGCAGTCCATACCCAGCCCAGGACCCACAATCGTCCACTGCAGTGCAGGGATTGGCAGAACAGGTTGTTTCATCGCCAGCAGCATTGGATGCCTACAGCTGCAACACACTAGTAAGGCTGATGTGCTTCAGATCGTCTGTAAGCTACGCCTCGACAGGGGTGGTATGATCCAGACCAGTGAGCAGTACCAGTTCCTGTACCTCACCCTGGCTCAGTACAGTAGGCAGCTGAGGAACACAGACAGTGGCTCAGAGAGCCCTGTCCCTATCCAGACCATTAAAACCACGGGGACATGCGGTGACAGAGAAAACCCAGCTAAAACTTGATATTTCCGCATGGGGGAATAAGCTCCTGGAAATCTGCTCACACACTGTGGCCATCTCATCCTCTTGACCGTGATATTGATTGTGGCATTTTTATGGGCATGTGATGTGGTACTCACCACACCATGCAGTTAGAATTTTATTGAACGtcattattattaatattgtCCATATTTGCTACCATGATAATAAAAACAAGTATTATGCATAATGTCCTTGGCTCTAATTAGACCTTAATTGCAGTTCACTAGACATGCTGAAGTAGATAAATACATGTATTATTATTTGATGCTTTTCCAGGTTCCAGGTTTATTTCATCATTGATCATTCATTCATTACATGTGGTGATATGTAGAacagaaa

Function

NR:

description
tyrosine-protein phosphatase non-receptor type 7-like

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18019 PTPN7; tyrosine-protein phosphatase non-receptor type 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616024.2 True 1819 mRNA 0.49 10 48988442 48994535

Neighbor

gene id symbol gene type direction distance location
klhdc8b LOC106572099 coding upstream 53110 48831069 ~ 48935332 (+)
si:dkey-32e6.3 LOC106572098 coding upstream 198697 48782956 ~ 48789745 (+)
usp19 NA coding upstream 205703 48747659 ~ 48782739 (+)
lamb2 LOC106572101 coding upstream 240918 48699212 ~ 48747524 (+)
lamb2l LOC106572102 coding upstream 290058 48637537 ~ 48698384 (+)
LOC110532278 LOC105027762 coding downstream 100 48994635 ~ 48998285 (+)
LOC110532282 LOC106572092 coding downstream 18628 49013163 ~ 49060073 (+)
LOC110532283 LOC106572090 coding downstream 69153 49063688 ~ 49081175 (+)
LOC110532284 LOC106572089 coding downstream 91289 49085824 ~ 49097702 (+)
LOC110532286 LOC106572086 coding downstream 165912 49160447 ~ 49161689 (+)
G813076 NA non-coding upstream 13057 48967764 ~ 48975385 (+)
G812969 NA non-coding upstream 45013 48942199 ~ 48943429 (+)
G812968 NA non-coding upstream 48855 48939159 ~ 48939587 (+)
G813060 NA non-coding upstream 58015 48930216 ~ 48930427 (+)
G813052 LOC106575331 non-coding upstream 72834 48915276 ~ 48915608 (+)
G813099 NA non-coding downstream 16799 49011334 ~ 49011612 (+)
G813100 NA non-coding downstream 17111 49011646 ~ 49011948 (+)
G813125 NA non-coding downstream 87789 49082324 ~ 49082584 (+)
G813128 NA non-coding downstream 90382 49084917 ~ 49085116 (+)
G813135 NA non-coding downstream 109048 49103583 ~ 49103820 (+)
G813071 NA other upstream 28451 48959749 ~ 48959991 (+)
G812688 LOC106572106 other upstream 417849 48545454 ~ 48570593 (+)
G812143 NA other upstream 1006141 47982001 ~ 47982301 (+)
G809685 NA other upstream 2852710 46134731 ~ 46135732 (+)
G807841 NA other upstream 4535365 44442662 ~ 44453077 (+)
G813074 etbr2 other downstream 8784 48962187 ~ 49006710 (+)
G813139 NA other downstream 120602 49115137 ~ 49115618 (+)
G815428 NA other downstream 1801679 50796214 ~ 50800381 (+)
G815610 NA other downstream 2083912 51078447 ~ 51078942 (+)
G815767 casz1 other downstream 2350837 51345372 ~ 51346494 (+)

Expression


Co-expression Network