LOC110532278 (LOC105027762)


Basic Information

Item Value
gene id LOC110532278
gene name LOC105027762
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48994635 ~ 48998285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616025.2
AACTCCTCTCACTACGTGATTCTGAAACCCCACTCAATGAGGAAGAACAACCCTTATTGGAAAATACAGACAGGGAGGAAAGAGGCATAGTAAACAAGGCAGATAACTGAAAAAAACCCATCAAATAATATAGCCAACACGTGCGCGCAAAACAGATTATTTAGCGAGTATTCATTATAGGCACGCTATTCGTTCTGTATGTAACGTTACTGTGTTGCCACTGCACGCTAGATAGCGCTAGCTAGGGAACTTGTAActcacgttagctagctggctagcaagcTCCCTTTCCCAGTAGTAGCAGTGCCATCACAACGCTCCCAGAATGATCGCTTTGATCAACAAGCTCCTTGACTGGTTTAAAGCACTATTTTGGAAGGAGGAGATGGAGTTGACTTTGGTGGGGCTACAGTATTCGGGAAAGACAACCTTCGTGAACGTGATTGCGTCAGGCCAGTTCAGTGAAGACATGATTCCCACAGTGGGCTTCAACATGAGGAAAATCACCAAGGGAAACGTCACCATTAAGCTGTGGGATATCGGTGGTCAGCCTCGATTCAGGAGTATGTGGGAGCGATACTGTCGAGGAGTCAGTGCCATCGTGTACATGGTTGATGCAGCTGACCCAGAGAAAATCGAGGCCTCTAAGAATGAACTACACAACTTGTTGGACAAGCCCCAGCTCCAGGGTATTCCTGTCCTTGTCTTGGGGAACAAGAGAGATCTTCCTGGGTCGCTTGATGAGAAAGAGCTGATTGAGAGGATGAACCTCTCAGCCATCCAGGACAGAGAAATATGCTGTTACTCTATCTCTTGCAAGGAAAAGGACAACATTGATATAACACTACAGTGGCTGATCCAGCACTCCAGAACCAAGCGGAGCACTTCATGAGAACCTCATCTCACGGTCACAGCCCTGAGACCGCCCCACAGACCTGCACAGGTCCCTTACaccctgtcctctatcctcccaaGCTTGTCCATTCTCCCCCTATTTTCTTTGGATGGCCCTCTCTTGCCAAGACTCCTTGCCTGATTCCACTCTCCTGAAGAGAGCCTGGAAACGTTTTACTTGCACTGTTCATTTTCTTTTttgtaatataataattattgtaGTGACATATGACCTCTGATGGATAAAGTGGTACTTAGCTGCCctgaaaaatgaaaaaaatgataaTTGTGTTCATATTTCATACTTCATCATCTCTGTTGATGTTGAGGTTCATATTCAACTGATCCGGAGACAGGGCGGAGTACTGTACGTAACCTCTGATCCCAATAGGTAGAAAAGACTATGGACTCTGAACCCTGCATCAATTAACAGCCCCAAGTCAAGTTTAGAATGCTGATATCAAATCTCAAACAATATAAGACTCAGGCCATAGTCTTATCACTTCCCAATGTCGGTGCTCAACTGaaatggtactgtacatgtatgtacCTTTTTTGAAGGGGGAGCATTGCGCCATTTGATTTAAATACTTGGAGTGTGTACAAGTATCTCCGCCTCTCATTTTTTAAAGGCTAATGGTAGGTGTTGTTAAAGAGTACCCTTGACGTAATCTCTATTGtcaatatatatctatatatacatttGCCTGATATGTCGTCATCTCTGTCTGTCGCCCTGACACCCTTCTGTTACTTTAGAAACAGCAGACAGGGTTTCTTTAAACTAAGCAACCTGGCCTTTTTAAATGTTCATAGGCCATGTCTATGGTCAAGCATTATCTGCAACACATGGTTtataaacaaaatatatatttatcgaTTTTTGCATATTCTTTCCCCTTTCTTACCATTAATTTATGTAATAGCTCATTTCCAACCAGTAATGTACAGATACTACTTGGCCAGTTTTTGTCTCATCACGAGTCATGAATAACCCCATTATAAAATGTAAAATCTGTTATTCAGTGACTGTTGATAAAGAAGTCCTCTCGATACATTGTGATTGTACAGGTGCCAGCCATATGAACTAACGGTGAAGGCTTCTATCTAATTTTGTATAAACTAAACTTACATGTCTATGAATTATTCTGCTTCCTACATTGCCAAAATTACCTAAGTCATTTTTGATTATTGACAACCCGCAGCAAAATATCTTTACTTACTTATTTGTTTGCATGCTTGGGCATAAGTATTTGTGGGACCTTTGAGAATGAACTAAAAATTGTTATTTTTTATGGCAAATAATAGTAAATACTGTATCTGGTTTAACCTGTTTGTACATTGTTTCAATTAAATTGATGATTGTGTATAATACTAACTAAAAACAATGGTGAAAACAACTTCA

Function

NR:

description
ADP-ribosylation factor-like protein 8A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07955 ARL8; ADP-ribosylation factor-like protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616025.2 True 2299 mRNA 0.41 7 48994635 48998285
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110532277 LOC106572094 coding upstream 100 48988442 ~ 48994535 (+)
klhdc8b LOC106572099 coding upstream 59303 48831069 ~ 48935332 (+)
si:dkey-32e6.3 LOC106572098 coding upstream 204890 48782956 ~ 48789745 (+)
usp19 NA coding upstream 211896 48747659 ~ 48782739 (+)
lamb2 LOC106572101 coding upstream 247111 48699212 ~ 48747524 (+)
LOC110532282 LOC106572092 coding downstream 14878 49013163 ~ 49060073 (+)
LOC110532283 LOC106572090 coding downstream 65403 49063688 ~ 49081175 (+)
LOC110532284 LOC106572089 coding downstream 87539 49085824 ~ 49097702 (+)
LOC110532286 LOC106572086 coding downstream 162162 49160447 ~ 49161689 (+)
mrgbp mrgbp coding downstream 165264 49163549 ~ 49167417 (+)
G813076 NA non-coding upstream 19250 48967764 ~ 48975385 (+)
G812969 NA non-coding upstream 51206 48942199 ~ 48943429 (+)
G812968 NA non-coding upstream 55048 48939159 ~ 48939587 (+)
G813060 NA non-coding upstream 64208 48930216 ~ 48930427 (+)
G813052 LOC106575331 non-coding upstream 79027 48915276 ~ 48915608 (+)
G813099 NA non-coding downstream 13049 49011334 ~ 49011612 (+)
G813100 NA non-coding downstream 13361 49011646 ~ 49011948 (+)
G813125 NA non-coding downstream 84039 49082324 ~ 49082584 (+)
G813128 NA non-coding downstream 86632 49084917 ~ 49085116 (+)
G813135 NA non-coding downstream 105298 49103583 ~ 49103820 (+)
G813071 NA other upstream 34644 48959749 ~ 48959991 (+)
G812688 LOC106572106 other upstream 424042 48545454 ~ 48570593 (+)
G812143 NA other upstream 1012334 47982001 ~ 47982301 (+)
G809685 NA other upstream 2858903 46134731 ~ 46135732 (+)
G807841 NA other upstream 4541558 44442662 ~ 44453077 (+)
G813074 etbr2 other downstream 5034 48962187 ~ 49006710 (+)
G813139 NA other downstream 116852 49115137 ~ 49115618 (+)
G815428 NA other downstream 1797929 50796214 ~ 50800381 (+)
G815610 NA other downstream 2080162 51078447 ~ 51078942 (+)
G815767 casz1 other downstream 2347087 51345372 ~ 51346494 (+)

Expression

LOC110532278(LOC105027762) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
End of interactive chart.

LOC110532278(LOC105027762) Expression in each Bioproject

Bar chart with 21 bars.
LOC110532278(LOC105027762) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
End of interactive chart.

Co-expression Network