Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110532284 |
| gene name | LOC106572089 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 49085824 ~ 49097702 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| minor histocompatibility antigen H13 isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0043523 | regulation of neuron apoptotic process | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004190 | aspartic-type endopeptidase activity | molecular_function |
| id | description |
|---|---|
| K09595 | HM13; minor histocompatibility antigen H13 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021616031.2 | False | 4270 | mRNA | 0.45 | 14 | 49085824 | 49097702 |
| XM_021616032.2 | False | 4221 | mRNA | 0.45 | 13 | 49085837 | 49097702 |
| XM_021616034.2 | False | 4024 | mRNA | 0.44 | 12 | 49085865 | 49097702 |
| XM_021616033.2 | False | 3667 | mRNA | 0.45 | 13 | 49086258 | 49097702 |
| XM_036988224.1 | True | 3728 | mRNA | 0.45 | 14 | 49087261 | 49097702 |
49,084,000
49,086,000
49,088,000
49,090,000
49,092,000
49,094,000
49,096,000
49,098,000
49,100,000
49,102,000
49,104,000
49,106,000
49,108,000
49,110,000
NC_048573.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110532283 | LOC106572090 | coding | upstream | 4649 | 49063688 ~ 49081175 (+) |
| LOC110532282 | LOC106572092 | coding | upstream | 25751 | 49013163 ~ 49060073 (+) |
| LOC110532278 | LOC105027762 | coding | upstream | 87539 | 48994635 ~ 48998285 (+) |
| LOC110532277 | LOC106572094 | coding | upstream | 91289 | 48988442 ~ 48994535 (+) |
| klhdc8b | LOC106572099 | coding | upstream | 150492 | 48831069 ~ 48935332 (+) |
| LOC110532286 | LOC106572086 | coding | downstream | 62745 | 49160447 ~ 49161689 (+) |
| mrgbp | mrgbp | coding | downstream | 65847 | 49163549 ~ 49167417 (+) |
| LOC118966186 | NA | coding | downstream | 86679 | 49184381 ~ 49186162 (+) |
| sulf2b | LOC106572085 | coding | downstream | 215484 | 49313186 ~ 49493787 (+) |
| si:ch211-218g4.2 | LOC106572084 | coding | downstream | 396605 | 49494307 ~ 49591982 (+) |
| G813128 | NA | non-coding | upstream | 708 | 49084917 ~ 49085116 (+) |
| G813125 | NA | non-coding | upstream | 3240 | 49082324 ~ 49082584 (+) |
| G813100 | NA | non-coding | upstream | 73876 | 49011646 ~ 49011948 (+) |
| G813099 | NA | non-coding | upstream | 74212 | 49011334 ~ 49011612 (+) |
| G813074 | etbr2 | non-coding | upstream | 79114 | 48962187 ~ 49006710 (+) |
| G813135 | NA | non-coding | downstream | 5881 | 49103583 ~ 49103820 (+) |
| G813137 | NA | non-coding | downstream | 8276 | 49105978 ~ 49106213 (+) |
| G813140 | NA | non-coding | downstream | 17981 | 49115683 ~ 49116087 (+) |
| G813160 | NA | non-coding | downstream | 52761 | 49150463 ~ 49150752 (+) |
| G813487 | NA | non-coding | downstream | 60464 | 49158166 ~ 49158461 (+) |
| G813071 | NA | other | upstream | 125833 | 48959749 ~ 48959991 (+) |
| G812688 | LOC106572106 | other | upstream | 515231 | 48545454 ~ 48570593 (+) |
| G812143 | NA | other | upstream | 1103523 | 47982001 ~ 47982301 (+) |
| G809685 | NA | other | upstream | 2950092 | 46134731 ~ 46135732 (+) |
| G813139 | NA | other | downstream | 17435 | 49115137 ~ 49115618 (+) |
| G815428 | NA | other | downstream | 1698512 | 50796214 ~ 50800381 (+) |
| G815610 | NA | other | downstream | 1980745 | 51078447 ~ 51078942 (+) |
| G815767 | casz1 | other | downstream | 2247670 | 51345372 ~ 51346494 (+) |
| LOC110532349 | LOC106591969 | other | downstream | 3225569 | 52323001 ~ 52325924 (+) |
