XLOC_026723 (CR450782.1)


Basic Information

Item Value
gene id XLOC_026723
gene name CR450782.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 46224589 ~ 46227010 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052028
gaCATCGTACATGTTCTGGGTGTCTTGAGGAGCTTGTCTTTGGATGATGCTGAGCAGGTCTTTCTTTCTGGTAACGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTGACAAACAACTGACGAAAGAAGAGAGACCATTCTATAGtggatacccttccagccgcaacccagtactgggaaacacccatttacaaTTATATacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaggcgacggtttcaaccactgtgctgccccatgTGCTCTATGCGGaggcctctagagatcgtgacctgtgaagagatgatgccaccatagaggacttctagatgtatccataatcctggaccagaccGTATCATGATCAGATGcagtggtggtcatggagaagtggagagcatgaTACTGATTAATGAAAGACCCCAGCGACAGATGAGTGCCCACATTGATCCTGTGGTCCAGCCTGAAAACCCGCTGGtgccctactcacacctgcagcttctccacgatggacgcccAGTGTTCTT
>TCONS_00052030
GGATGCGCTAATGGACGACACGGATGACAAGGAAAGTgaCATCGTACATGTTCTGGGTGTCTTGAGGAGCTTGTCTTTGGATGATGCTGAGCAGGTCTTTCTTTCTGTGAAGTAAAAGAATTTAACAGACAGATTGACAAACAACTGACGAAAGAAGAGAGACCATTCTATAGGTGGtccctttatttatcaggggttgccacagcagaatgaaccgccaacttatgcagcatatgttttacacagtggatacccttccagccgcaacccagtactgggaaacacccatttacaaTTATATacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaggcgacggtttcaaccactgtgctgccccatgTGCTCTATGCGGaggcctctagagatcgtgacctgtgaagagatgatgccaccatagaggacttctagatgtatccataatcctggaccagaccGTATCATGATCAGATGcagtggtggtcatggagaagtggagagcatgaTACTGATTAATGAAAGACCCCAGCGACAGATGAGTGCCCACATTGATCCTGTGGTCCAGCCTGAAAACCCGCTGGtgccctactcacacctgcagcttctccacgatggacgcccA
>TCONS_00052029
GGATGCGCTAATGGACGACACGGATGACAAGGAAAGTgaCATCGTACATGTTCTGGGTGTCTTGAGGAGCTTGTCTTTGGATGATGCTGAGCAGGTCTTTCTTTCTGGTAACGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTGACAAACAACTGACGAAAGAAGAGAGACCATTCTATAGGTGGtccctttatttatcaggggttgccacagcagaatgaaccgccaacttatgcagcatatgttttacacagtggatacccttccagccgcaacccagtactgggaaacacccatttacaaTTATATacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaggcgacggtttcaaccactgtgctgccccatgTGCTCTATGCGGaggcctctagagatcgtgacctgtgaagagatgatgccaccatagaggacttctagatgtatccataatcctggaccagaccGTATCATGATCAGATGcagtggtggtcatggagaagtggagagcatgaTACTGATTAATGAAAGACCCCAGCGACAGATGAGTGCCCACATTGATCCTGTGGTCCAGCCTGAAAACCCGCTGGtgccctactcacacctgcagcttctccacgatggacgcccA
>TCONS_00052031
CATCGTACATGTTCTGGGTGTCTTGAGGAGCTTGTCTTTGGATGATGCTGAGCAGGTCTTTCTTTCTGGTAACGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTGACAAACAACTGACGAAAGAAGAGAGACCATTCTATAGgggttgccacagcagaatgaaccgccaacttatgcagcatatgttttacacagtggatacccttccagccgcaacccagtactgggaaacacccatttacaaTTATATacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaggcgacggtttcaaccactgtgctgccccatgTGCTCTATGCGGaggcctctagagatcgtgacctgtgaagagatgatgccaccatagaggacttctagatgtatccataatcctggaccagaccGTATCATGATCAGATGcagtggtggtcatggagaagtggagagcatgaTACTGATTAATGAAAGACCCCAGCGACAGATGAGTGCCCACATTGATCCTGTGGTCCAGCCTGAAAACCCGCTGGtgccctactcacacctgcagcttctccacgatggacgcc
>TCONS_00052032
ATTGGATCAAGGATGCGCTAATGGACGACACGGATGACAAGGAAAGTgaCATCGTACATGTTCTGGGTGTCTTGAGGAGCTTGTCTTTGGATGATGCTGAGCAGGTCTTTCTTTCTGGTAACGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTGACAAACAACTGACGAAAGAAGAGAGACCATTCTATAGaggcctctagagatcgtgacctgtgaagagatgatgccaccatagaggacttctagatgtatccataatcctggaccagaccGTATCATGATCAGATGcagtggtggtcatggagaagtggagagcatgaTACTGATTAATGAAAGACCCCAGCGACAGATGAGTGCCCACATTGATCCTGTGGTCCAGCCTGAAAACCCGCTGGtgccctactcacacctgcagcttctccacgatggac
>TCONS_00052033
TGGATCAAGGATGCGCTAATGGACGACACGGATGACAAGGAAAGTgaCATCGTACATGTTCTGGGTGTCTTGAGGAGCTTGTCTTTGGATGATGCTGAGCAGGTCTTTCTTTCTGGTAACGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTGACAAACAACTGACGAAAGAAGAGAGACCATTCTATAGtggatacccttccagccgcaacccagtactgggaaacacccatttacaaTTATATacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaggcgacggtttcaaccactgtgctgccccatgTGCTCTATGCGGGTGAGTgggattgacaaaccacctggAGGACACATTCTtgctgtcttaatgcaccagacattttgttataaataatcatgtgcgtttcatgtttatttataaaactgctaatttatctcatagcacttcatttttgtcttgatatttaatatcttttgtttaaatacactatgaacagcagctgcgctaattattttccttgttccctatttccacctggggatatttatctagaggcctctagagatcgtgacctgtgaagagatgatgccaccatagaggacttctagatgtatccataatcctggaccagaccGTATCATGATCAGATGcagtggtggtcatggagaagtggagagcatgaTACTGATTAATGAAAGACCCCAGCGACAGATG
>TCONS_00052034
GGATTGGATCAAGGATGCGCTAATGGACGACACGGATGACAAGGAAAGTgaCATCGTACATGTTCTGGGTGTCTTGAGGAGCTTGTCTTTGGATGATGCTGAGCAGGTCTTTCTTTCTGGTAACGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTGACAAACAACTGACGAAAGAAGAGAGACCATTCTATAGtccctttatttatcaggggttgccacagcagaatgaaccgccaacttatgcagcatatgttttacacagtggatacccttccagccgcaacccagtactgggaaacacccatttacaaTTATATacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaggcgacggtttcaaccactgtgctgccccatgTGCTCTATGCGGaggacttctagatgtatccataatcctggaccagaccGTATCATGATCAGATGcagtggtggtcatggagaagtgga
>TCONS_00052035
CATCGTACATGTTCTGGGTGTCTTGAGGAGCTTGTCTTTGGATGATGCTGAGCAGGTCTTTCTTTCTGGTAACGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTGACAAACAACTGACGAAAGAAGAGAGACCATTCTATAGGTGGGTATTGCTCTTATATactaaaaaatatggagttgGCAGTAAGGTTTCCTGTTTGGTTCTCCCaacagtgcatatatatatatatatatctgtgtgtgtatatatattatagctaacactgtaaagcaaatgtttgtttttataccacttatattaaatattaatctaaattTAATTGCATAACAATTGATTAACCTTTTGAGTTTATATACATGATTTTACATATTCAAGAATATCTAtatacattcatttttcttttcgacttagtccctttatttatcaggggttgccacagcagaatgaaccgccaacttatgcagcatatgttttacacagtggatacccttccagccgcaacccagtactgggaaacacccatttacaaTTATATacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaggcgacggtttcaaccactgtgctgccccatgTGCTCTATGCGGGTGAGTgggattgacaaaccacctggAGGACACATTCTtgctgtcttaatgcaccagacattttgttataaataatcatgtgcgtttcatgtttatttataaaactgctaatttatctcatagcacttcatttttgtcttgatatttaatatcttttgtttaaatacactatgaacagcagctgcgctaattattttccttgttccctatttccacctggggatattta
>TCONS_00052036
TTCTCTATTGCAGTGAAGTAAAAGAATTTAACAGACAGATTGACAAACAACTGACGAAAGAAGAGAGACCATTCTATAGtccctttatttatcaggggttgccacagcagaatgaaccgccaacttatgcagcatatgttttacacagtggatacccttccagccgcaacccagtactgggaaacacccatttacaaTTATATacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaggcgacggtttcaaccactgtgctgccccatgTGCTCTATGCGGGTGAGTgggattgacaaaccacctggAGGACACATTCTtgctgtcttaatgcaccagacattttgttataaataatcatgtgcgtttcatgtttatttataaaactgctaatttatctcatagcacttcatttttgtcttgatatttaatatcttttgtttaaatacactatgaacagcagctgcgctaattattttccttg

Function

GO:

id name namespace
GO:0048704 embryonic skeletal system morphogenesis biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095080

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052028 False 595 lncRNA 0.49 4 46224589 46225847
TCONS_00052030 False 678 lncRNA 0.49 5 46224597 46226998
TCONS_00052029 False 697 lncRNA 0.48 5 46224597 46226998
TCONS_00052031 False 636 lncRNA 0.49 4 46224599 46225845
TCONS_00052032 False 443 lncRNA 0.47 4 46224602 46227008
TCONS_00052033 False 782 lncRNA 0.43 4 46224681 46227006
TCONS_00052034 False 536 lncRNA 0.46 5 46224721 46227010
TCONS_00052035 False 907 lncRNA 0.37 2 46224848 46225845
TCONS_00052036 True 536 lncRNA 0.41 2 46224875 46225680

Neighbor

gene id symbol gene type direction distance location
XLOC_026722 NA coding downstream 7116 46153127 ~ 46217473 (-)
XLOC_026721 shisa9b coding downstream 109357 46043406 ~ 46115232 (-)
XLOC_026720 igfals coding downstream 376332 45845007 ~ 45848257 (-)
XLOC_026719 NA coding downstream 380889 45832077 ~ 45843700 (-)
XLOC_026718 si:ch211-66h3.4 coding downstream 401675 45818626 ~ 45822914 (-)
XLOC_026724 snrnp25 coding upstream 150295 46377305 ~ 46379900 (-)
XLOC_026725 cdip1 coding upstream 160850 46387860 ~ 46410387 (-)
XLOC_026726 NA coding upstream 235575 46462585 ~ 46463256 (-)
XLOC_026727 CR385086.1 coding upstream 530601 46757611 ~ 46762706 (-)
XLOC_026728 elavl3 coding upstream 573180 46800190 ~ 46818001 (-)
XLOC_026716 NA non-coding downstream 681138 45539786 ~ 45543451 (-)
XLOC_026709 NA non-coding downstream 1888736 44332747 ~ 44335853 (-)
XLOC_026708 NA non-coding downstream 2100219 44111545 ~ 44124370 (-)
XLOC_026731 NA non-coding upstream 903022 47130032 ~ 47131111 (-)
XLOC_026732 NA non-coding upstream 967728 47194738 ~ 47196960 (-)
XLOC_026736 NA non-coding upstream 1600192 47827202 ~ 47833114 (-)

Expression


Co-expression Network