LOC110532294 (LOC106572080)


Basic Information

Item Value
gene id LOC110532294
gene name LOC106572080
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 49719101 ~ 49725551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616056.2
gcagttcacggtaaggtctacaccttttgtattcagcgcatgtgacaatttgatttgatttattgttgAATACAAcctttcttcctttctctttGTGCCACCCTTTATCTTTGTcttccctccctcttcatctccctctcttcgcTCTGTCTTTGAAAGTTCAGGTCTTGTTGAAACAGGAAACTGAGTGTCAGAGTAAGAGGTGAATAtaaacccccctcctctcacaTCTCTCCACTCAGATGTACTACAGAGGACTTTGCTGTGCTACACCTACAGATCCTCCATCTATCACCACTGGCTCCTTTCCCCCATTGGAACATCACAGAGGAGGAGAACACTCATTCTCCATTGGTGTCTAAAGGACTCTCACACAGATTCTCAAATACGCACACGTCATACTCACATTACACATGTGAATGTTACCAGCCGTGTGAAACACCCAGACCCACTGGACTCAACCTCTGGGCCTCACTGGGTTATACCTCTATCCCTGCGGTACTCTACAGCTCTGACATCAACTCATTCCACAGCATCAGAGTGCTGCTGATCGTCACCAGAGCCACAACAGGGCAATGCTCCCCCAGAGTTCTCTGGTATCCCTTCCATAAGAGCTCCACATCGCCATGGGCAGTGGGCCCAGTAAAGAGCATCAGGGATCCAGCACTCATGCAGCCTTGCTGGGCCAGGAAGAGCTCGCTGAGCCGGTCATACTGGAGAGCAGCAGGTATGTGGTAGTGGCCCTGTATAACTATCCCACTGGACATCCAGCAAACAGCAGTATCCGCGCGGGAGAGAGAATCAATGTGCTTTCAGACGAGGGGGAATGGTGGAAAGTGAGATCCTCTGCCACAGGCAATGAGAGCTACATCCCCAGCAGCTACACAGCCAGGGTGTACCACAGGTGTCAGTATGAGGGTCTCAGCAGAAAGAAGGCTGAGGAGCTCCTGTTGCTGCCCAACAACCAGACTGGCTCTTTTCTGGTCCGGGAAAGTCAGACCCGCCCTGGTGCCCACTCCCTGTCAGTGCGTAAGACCAGTGACCAGGACCGTTGCTCAGTCAAACACTACCGGATCCAACAACTGGAGAACGGCTGGCACTTCATCTCCCCCTGCCTCACCTTCCCCACCCTCACAGCCCTAGTGGACCACTACTCAGAGGTCACTGATGGGCTGTGCTGTCTGTTGGGGGAGCCTTGCTTCATCCAGGGGTCCAACAGCATTCCTGTGGCTACTGGCCCAATACCCATGGCCGTCAGGAAGGCCACCCTCAACTGGAAAGATGCGGACAGCTCCATGATTTTTGGCAAGGTCAATGAGGATTCCCTGGTGAGTGAGGGCCTGAGAGAGGCCATCAGTTCCTACCTCTTCATGACAGGGGACTGCAGCCAGAAATGGGACAGCTGAGACTGGAGCTGTcctcagagagacaaatagtGAGATACACAGACTAAAACGGGGAGTAAAACAGAGCAAGGAGCTTACCTATTGGGGCAGAGGGTACCTGAGGACCAGATCACGTGGCCATGAACCTAGTGGATCTTGAACATTGTTGAGGGAACTGGGATTCACAACTCAACCACTGCAGACAACCATTGTTCTCAAAGCTATGGTTGTCAAGTGCTCACATTGCCAAGCAGACGAGACCCATATTTGCTTGGATTCATGATCAGAAGACATTTTTAGATCCTGGAGGCAGACTAAAAAATACTTTACAGAAATAAGGGAGTATCTGTGCCCATAGGAACACAGTGTTCTAAAGAGATCATGCATTCAAACTAATTACAGGTTGCAACATGGAAAAAGTGTCCGGAATGAGATGATGATCCTCACTGTGTCAGATTGTGTACATGATCTCTAATGTTAAACTAGAACAGTAGGTCTAAAGACAGTGACACGATATGTTACCATTTATTATGGTTTTTGAAAAGCTGCTAACTTCATAATGAAATGTTCCATTCAGCCTTACTCGTGATTCTAAGTAACCACAGCTGATTGCAATGTTCCTTACAGAAAGTAGTGTGATGGTAGGTATACAGCCCTATATATGAAAGGCATAACCACCTGCATGTTTCAAATAGATCCCCTATCATCAGTAAACAGACTATTTGGTTGGTTTTGTTGAGCTACCTTGAAAAAAAAGGAAATGTTTGTTGTATGGGTTTCCTGTCCTGAACAGAAACACCTTTTAGCTGTTGCTTGTTCTCCACCGCACCGCAGTATAACTTTGACACAGGATATGGTCAAGGTGCAGTGGAAAAAAATATAGTGCGGCAGAGACAGCAGAAAGTTATGATTTGTGCTGAATAGCATCTCAAAGTTATGTgtaatatttaagcaataaggcaagaggggttgtggtatatggccaatataccacggcttagGGCTGTTATTATGCAAGACGCAACACGTAAACGTATTTAgaaaagtacaaataaatgtttcattCCATATGGTGTACTGTCtcataccacagctttcagccaatcagcaatcagggctcgaaccacccagtttttaATATGGTATAAAACACTTAAATGTTCTTATGTGGTTTCATCAACTGAAACAATAGACTGTATACATTATGTGCTCAATATTGAGCTTTGTGATCAATACAAATTGTGGAAATATTTTCTTTACTATCCTACATTAAAAAAAGAATTTTAAAAAT

Function

NR:

description
src-like-adapter 2

GO: NA

KEGG:

id description
K23698 SLA; src-like-adapter

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616056.2 True 2676 mRNA 0.46 8 49719101 49725551

Neighbor

gene id symbol gene type direction distance location
ndrg3b LOC106572081 coding upstream 2639 49640408 ~ 49716462 (+)
phf20b LOC106572082 coding upstream 79850 49615638 ~ 49639251 (+)
si:ch211-218g4.2 LOC106572084 coding upstream 127119 49494307 ~ 49591982 (+)
sulf2b LOC106572085 coding upstream 225314 49313186 ~ 49493787 (+)
LOC118966186 NA coding upstream 532939 49184381 ~ 49186162 (+)
edem2 edem2 coding downstream 156 49725707 ~ 49737456 (+)
LOC118966066 trpc4ap coding downstream 16312 49741863 ~ 49743326 (+)
LOC110531195 trpc4ap coding downstream 19827 49745378 ~ 49785055 (+)
gss gss coding downstream 63171 49788722 ~ 49797031 (+)
LOC110533019 gss coding downstream 75212 49800763 ~ 49803462 (+)
G813798 LOC105030512 non-coding upstream 29097 49657658 ~ 49690004 (+)
G813789 NA non-coding upstream 60510 49640220 ~ 49658591 (+)
G813769 NA non-coding upstream 116703 49601968 ~ 49602398 (+)
G813747 NA non-coding upstream 155283 49563553 ~ 49563818 (+)
G813746 NA non-coding upstream 156804 49562063 ~ 49562297 (+)
G813822 NA non-coding downstream 3857 49729408 ~ 49740600 (+)
G813870 NA non-coding downstream 86383 49811934 ~ 49812165 (+)
G814225 NA non-coding downstream 113487 49839038 ~ 49839290 (+)
G814281 NA non-coding downstream 153529 49879080 ~ 49879349 (+)
G813139 NA other upstream 603483 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 712391 48962187 ~ 49006710 (+)
G813071 NA other upstream 759110 48959749 ~ 48959991 (+)
G812688 LOC106572106 other upstream 1148508 48545454 ~ 48570593 (+)
G812143 NA other upstream 1736800 47982001 ~ 47982301 (+)
G815428 NA other downstream 1070663 50796214 ~ 50800381 (+)
G815610 NA other downstream 1352896 51078447 ~ 51078942 (+)
G815767 casz1 other downstream 1619821 51345372 ~ 51346494 (+)
LOC110532349 LOC106591969 other downstream 2597720 52323001 ~ 52325924 (+)
LOC110532368 LOC106572016 other downstream 3000870 52692676 ~ 52734929 (+)

Expression


Co-expression Network