edem2 (edem2)


Basic Information

Item Value
gene id edem2
gene name edem2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 49725707 ~ 49737456 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616057.2
GGTTGCGGAAGACTTCAGCACCCACGACGCACGCGTCATGTCTATTCAATTTACTTCCTGTTAGCGATCCCTAGTGTGTGGTGGTGTTGCATTTGATCATTTACTCAGTGTTTTTAGCTGTTATCCTAGCTATACCTCGTTTATTCATGCTTAGGTTGCTGTGCACTACTATTTTGTGCGTAATTCACGTTTTTACATTGATCAGCAATGCGAAAGGACAAGAGTTTACAGAGCTGGAGATGGCACACTACAGGGAGAAAATCAAGTCCATGTTTTATCATGCATACAACAGCTACTTGGATCATGCTTATCCATATGACGAACTGCGGCCCCTGACCTGTGATGGCCAGGATACATGGGGCAGTGTTTCACTGACTTTGATAGATGCCCTGGATACATTGCTGATTCTGGGGAACCACACTGAGTTTCAGCGTGTGGCAACTCTGCTTCAGGACACTGTGGACTTTGACATCGACGTCAATGCATCTGTTTTTGAGACTAACATTCGAGTGGTGGGTGGTCTTCTCTCAGCCCACCTGCTGTCTAAGCGTGCTGGGATGGAGGTGGAGCCTGGCTGGCCTTGTTCTGGACCCCTCCTCAGGATGGCTGAGGACGCAGCACGAAAACTCCTCCCTGCGTTCCAGACGCCCACAGGGATGCCCTATGGCACGGTGAACCTGCTTAGAGGGGTGAACCCTACAGAGACCCCTGTCACCTGTACTGCTGGGGTGGGTACCTTCATCCTGGAGTTTTCAGCCCTTAGCCGGCTCACTGGGGACCCCGTATTTGAGGACGTGGCGCGCAAGGCCCTCCGGTCACTGTGGAAGACTCGCTCTGAGATAGGACTGGTGGGGAACCACATTGATGTGCTCTCCAAGAAATGGGTGGCCCAGGACGCAGGTATAGGGGCCGGTGTGGACTCGTACTTTGAGTACCTGGTGAAGGGCTCTATCATGCTACAAGATGAGGAACTGCTATCAATGTTCTTAGAGTATGACAAGGCAATTAAAAACTACACCAAGTTTGATGACTGGTACCTGTGGGTCCAGATGCACAAGGGAACGGTCTCTATGCCTGTTTTCCAATCACTGGAGGCCTTCTGGCCAGGGCTACAGAGTTTGATCGGTGAGCTGGACAGTGCATTGAGGACTTTCCATAACTACTACACAGTGTGGAGACAATTTGGAGGACTCCCGGAATTCTACAGTATTCCACAGGGGTACACTGTAGACAAGAGAGAAGGATACCCTTTACGGCCAGAGCTGATAGAGAGTGCCATGTACCTGTACAAAGCCACTGGTGACCACACCTTTCTGCAGCTCGGTCGAGATGCTGTGGAGTCCATTGAGAAGATTACACGGGTCCCCTGTGGCTATGCCAGTGTGAAAGACATCAGAGATCACAAGCTGGACAACCGCATGGAGTCCTTCTTCCTGGCAGAAACCATCAAGTACCTCTACCTCCTGTTCGATCCAGataacttccttcacaacagtggCCTGGACTTTGAGCTGGGCACTGGCCCCAGTGAGGACTGTGTTTTGGGGGCAGGGGGTTACATCTTCAACACAGAGGCCCACCCGCTGGACCCTGCTGCCCTTCACTGCTGCAGCCGCAAGCAGGAGGAACGCAGAGAGCTGCAGGACATCCTCCTTAACCTATCAGAACCCCTTGCCAGTCCACAGGATACCCAATCacaggagacagacagtgagaccgAGCCACCTGTTATGGATCCTTCAGAAAGTATAGCACTGAAGCCTGGGAGCAGGAGGaaagcccctctcctctcctgccctatGCAGCCCTTCAGCGCACGGCTAGCTGTCATGGGTCAAGTCTTCACAGACGGCACATGACATGGACTTACAAATGTTTTCACTTTTTGAAGATTACACTTAAAGATGGAATCCATCTCGCCTCTGTCTGAACCACGGTcgttttttgtttttgtcaacGAAGCAGAGATGGGGAGCAGATATTCTATGTATGATAGTAACAGGATATACAGAACGTTTGAGCTACTATTTTCATTTTACCCATAGACCAGTCATTacactaatgctagttagcatgggctcgcaaaactacctctaacttccttcttACTGGACACAGAAACATAAAAATGGTATTGACGAGTTCATCGGAATCTGGGGAAGTGGATAAAGGgcatcattgccaaaatcctgaagtatccagcttttaactgaacactgaaaattAAAGATTATTTACTGTGGTTTTCATTATACAAAATGCTTTCTGATTCATGGCATTGAGCTTGGTTTCTAAAATACATTGTAATATAGGCATGTGGTTAGGAAAGGTATGAATAAATAATAGTATGCATTAAACATTTTCATACTCAAGTGATGGAA

Function

symbol description
edem2 Predicted to enable calcium ion binding activity; hydrolase activity, hydrolyzing O-glycosyl compounds; and lytic transglycosylase activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human EDEM2 (ER degradation enhancing alpha-mannosidase like protein 2).

NR:

description
PREDICTED: ER degradation-enhancing alpha-mannosidase-like protein 2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG:

id description
K10085 EDEM2; ER degradation enhancer, mannosidase alpha-like 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616057.2 True 2381 mRNA 0.49 11 49725707 49737456

Neighbor

gene id symbol gene type direction distance location
LOC110532294 LOC106572080 coding upstream 156 49719101 ~ 49725551 (+)
ndrg3b LOC106572081 coding upstream 9245 49640408 ~ 49716462 (+)
phf20b LOC106572082 coding upstream 86456 49615638 ~ 49639251 (+)
si:ch211-218g4.2 LOC106572084 coding upstream 133725 49494307 ~ 49591982 (+)
sulf2b LOC106572085 coding upstream 231920 49313186 ~ 49493787 (+)
LOC118966066 trpc4ap coding downstream 4407 49741863 ~ 49743326 (+)
LOC110531195 trpc4ap coding downstream 7922 49745378 ~ 49785055 (+)
gss gss coding downstream 51266 49788722 ~ 49797031 (+)
LOC110533019 gss coding downstream 63307 49800763 ~ 49803462 (+)
LOC118966067 NA coding downstream 144700 49882156 ~ 49917857 (+)
G813798 LOC105030512 non-coding upstream 35703 49657658 ~ 49690004 (+)
G813789 NA non-coding upstream 67116 49640220 ~ 49658591 (+)
G813769 NA non-coding upstream 123309 49601968 ~ 49602398 (+)
G813747 NA non-coding upstream 161889 49563553 ~ 49563818 (+)
G813746 NA non-coding upstream 163410 49562063 ~ 49562297 (+)
G813870 NA non-coding downstream 74478 49811934 ~ 49812165 (+)
G814225 NA non-coding downstream 101582 49839038 ~ 49839290 (+)
G814281 NA non-coding downstream 141624 49879080 ~ 49879349 (+)
G814313 LOC106610265 non-coding downstream 204013 49941469 ~ 49941746 (+)
G813139 NA other upstream 610089 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 718997 48962187 ~ 49006710 (+)
G813071 NA other upstream 765716 48959749 ~ 48959991 (+)
G812688 LOC106572106 other upstream 1155114 48545454 ~ 48570593 (+)
G812143 NA other upstream 1743406 47982001 ~ 47982301 (+)
G815428 NA other downstream 1058758 50796214 ~ 50800381 (+)
G815610 NA other downstream 1340991 51078447 ~ 51078942 (+)
G815767 casz1 other downstream 1607916 51345372 ~ 51346494 (+)
LOC110532349 LOC106591969 other downstream 2585815 52323001 ~ 52325924 (+)
LOC110532368 LOC106572016 other downstream 2988965 52692676 ~ 52734929 (+)

Expression


Co-expression Network