Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118966066 |
| gene name | trpc4ap |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 49741863 ~ 49743326 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| trpc4ap | Enables phosphatase binding activity and ubiquitin ligase-substrate adaptor activity. Involved in protein ubiquitination and ubiquitin-dependent protein catabolic process via the C-end degron rule pathway. Part of Cul4A-RING E3 ubiquitin ligase complex. Is active in Cul4-RING E3 ubiquitin ligase complex. |
| description |
|---|
| PREDICTED: short transient receptor potential channel 4-associated protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005053274.1 | True | 521 | mRNA | 0.43 | 3 | 49741863 | 49743326 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| edem2 | edem2 | coding | upstream | 4407 | 49725707 ~ 49737456 (+) |
| LOC110532294 | LOC106572080 | coding | upstream | 16312 | 49719101 ~ 49725551 (+) |
| ndrg3b | LOC106572081 | coding | upstream | 25401 | 49640408 ~ 49716462 (+) |
| phf20b | LOC106572082 | coding | upstream | 102612 | 49615638 ~ 49639251 (+) |
| si:ch211-218g4.2 | LOC106572084 | coding | upstream | 149881 | 49494307 ~ 49591982 (+) |
| LOC110531195 | trpc4ap | coding | downstream | 2052 | 49745378 ~ 49785055 (+) |
| gss | gss | coding | downstream | 45396 | 49788722 ~ 49797031 (+) |
| LOC110533019 | gss | coding | downstream | 57437 | 49800763 ~ 49803462 (+) |
| LOC118966067 | NA | coding | downstream | 138830 | 49882156 ~ 49917857 (+) |
| si:dkey-8e10.3 | LOC106572072 | coding | downstream | 213515 | 49956841 ~ 49968731 (+) |
| G813822 | NA | non-coding | upstream | 1263 | 49729408 ~ 49740600 (+) |
| G813798 | LOC105030512 | non-coding | upstream | 51859 | 49657658 ~ 49690004 (+) |
| G813789 | NA | non-coding | upstream | 83272 | 49640220 ~ 49658591 (+) |
| G813769 | NA | non-coding | upstream | 139465 | 49601968 ~ 49602398 (+) |
| G813747 | NA | non-coding | upstream | 178045 | 49563553 ~ 49563818 (+) |
| G813870 | NA | non-coding | downstream | 68608 | 49811934 ~ 49812165 (+) |
| G814225 | NA | non-coding | downstream | 95712 | 49839038 ~ 49839290 (+) |
| G814281 | NA | non-coding | downstream | 135754 | 49879080 ~ 49879349 (+) |
| G814313 | LOC106610265 | non-coding | downstream | 198143 | 49941469 ~ 49941746 (+) |
| G813139 | NA | other | upstream | 626245 | 49115137 ~ 49115618 (+) |
| G813074 | etbr2 | other | upstream | 735153 | 48962187 ~ 49006710 (+) |
| G813071 | NA | other | upstream | 781872 | 48959749 ~ 48959991 (+) |
| G812688 | LOC106572106 | other | upstream | 1171270 | 48545454 ~ 48570593 (+) |
| G812143 | NA | other | upstream | 1759562 | 47982001 ~ 47982301 (+) |
| G815428 | NA | other | downstream | 1052888 | 50796214 ~ 50800381 (+) |
| G815610 | NA | other | downstream | 1335121 | 51078447 ~ 51078942 (+) |
| G815767 | casz1 | other | downstream | 1602046 | 51345372 ~ 51346494 (+) |
| LOC110532349 | LOC106591969 | other | downstream | 2579945 | 52323001 ~ 52325924 (+) |
| LOC110532368 | LOC106572016 | other | downstream | 2983095 | 52692676 ~ 52734929 (+) |
