LOC110531195 (trpc4ap)


Basic Information

Item Value
gene id LOC110531195
gene name trpc4ap
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 49745378 ~ 49785055 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986951.1
TTCCTCCTCAGGAACAAGTATCTCCTCCTGAACGCTCAGGAGCTGAATGAACTCAGTGCCATCTCTCTGAAAGCCAGCATCCCTGAGGTGGAGGCTTTTGTCAACACGGACAGAAATCTAATCTGTGATGGTAAAAAGGGCCTCCTGACACGGCTACTTTCAGTCATGAAGAAAGAACCGACTGAATCCTCATTGAGgttctggCAGGCGGGGGCAGTGGAGAGCTTCCTTAGAGGGGCCACCACCTACGCTGACCAGGTGTTCCTGCTCAAGAGAGGCCTGCTGGAGCACATTCTGTTCAGCATCATAGACAGTGGCTGTACATCCAGGGACGTGCTGCAGAGCTACTTTGACCTGCTGGGGGAACTCATGAAGTTCAACATTGACGCCTTCAAGAGGTTCAACAAATACGTCAACACCGAGGAGAAGGAGAATGTGAGCTGTCTGAACACCAGCCTGGTGGTGTTGATGCTGGCCAGGAGGCGGGACAAACTGGCCTTCTGTCTCAACGCCCTGAGGGAGGAGGAGTACGCTGAGAAATACCCCGGCTGCCTGCTCAACAACTTACACAACCTGCTGTGCTTCTAGCAGCGCCACTACCTCAACAAGGACAAGGACAGCACCTGTCTGGAGAACAGTCCCTGTATATCATTTACCTACTGGAAGGAGACTGTGTCGGTTCTGTTGGACTCTGACTCGACTTCACTATGTGCCATAGCCCGCTACATCGAGGCCTACATGGATCTGGGCAAAGACTTTCTGGAAGTTTAATGCttctggatggatggatagagaagagaggagagtcaATGTCTCCATTCACCTACAAACTGAACAGATCTGAGCTCTCACTCCTCCACATCCTTAGGTCTACAAAATGACTGTGTGCATAGTtttgggcttgtgtgtgtgttaggtgtaGGAGTGGAtacttgtgttgtgtgtgtgtgtgtgtatggagccGTGTTGGGGTGTATAACATGCCGGAATTGGAGTTTCCATGTAGCTGTGGAGGAGAAACAGTCAGCCAATCGGCAGCCCCAGAGGACTGAGGTTCCTTCAGCCTTTCACTAATAGTATGGATAGGATCTCTCCTACCCTCTGGTTAAAAAAACAAACCCCACACCCACTTCATAGTGTCGCCAAAATGTACATGGTAATTACATTGGCAGATTGTGCATAGTAGTTACAACTGGTATACTGTTTTGTGGCACAATTTCAGAGATTCACAAATTGTCTAGTGTCATAGTTCTACAGTAAGGAAAGGTTATAACAATCCATTTGAGTTTGTATGCCAATGTAATGCATGTAATTACATTTTGATGTGCAGTCACACAAACATGATGTGTAAGTACACTGACTGAAAGAAATGCATTACCATACcagtatgttaatgttttagggacattgagacctagattcaatcagatcgagTGTTAACCGGTGATGGCTGATGTTTCTTTGGGAGGTGTAACTGTGTTGAAGCTGTCAAATTGGTGCTCTTGTGATCCttgtgttggggaataatcagaattagttggtaacataggtaagatgttttatattcatcatatgtttgtaagttacttctcatcagaatgttgtttttgtataatactgtggcggggttt
>TU925813
gaattagttggtaacataggtaagatgttttatattcatcatatgtttgtaagttacttctcatcagaatgttgtttttgtataatactgtggcggggtttgCAGtcatctgttctatgtcaagactaagttacttgggccggggagaggtcaagcgtgtatctcttggctccacaatgtctgtgtgccagtcagtgtgtctctgtgatcttGTCAAGATAGGA

Function

symbol description
trpc4ap Enables phosphatase binding activity and ubiquitin ligase-substrate adaptor activity. Involved in protein ubiquitination and ubiquitin-dependent protein catabolic process via the C-end degron rule pathway. Part of Cul4A-RING E3 ubiquitin ligase complex. Is active in Cul4-RING E3 ubiquitin ligase complex.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986951.1 False 1631 mRNA 0.46 6 49745378 49750166
TU925813 True 224 lncRNA 0.41 2 49750066 49785055

Neighbor

gene id symbol gene type direction distance location
LOC118966066 trpc4ap coding upstream 2052 49741863 ~ 49743326 (+)
edem2 edem2 coding upstream 7922 49725707 ~ 49737456 (+)
LOC110532294 LOC106572080 coding upstream 19827 49719101 ~ 49725551 (+)
ndrg3b LOC106572081 coding upstream 28916 49640408 ~ 49716462 (+)
phf20b LOC106572082 coding upstream 106127 49615638 ~ 49639251 (+)
gss gss coding downstream 38556 49788722 ~ 49797031 (+)
LOC110533019 gss coding downstream 50597 49800763 ~ 49803462 (+)
LOC118966067 NA coding downstream 131990 49882156 ~ 49917857 (+)
si:dkey-8e10.3 LOC106572072 coding downstream 206675 49956841 ~ 49968731 (+)
LOC110532304 LOC106566492 coding downstream 435299 50138196 ~ 50205006 (+)
G813822 NA non-coding upstream 4778 49729408 ~ 49740600 (+)
G813798 LOC105030512 non-coding upstream 55374 49657658 ~ 49690004 (+)
G813789 NA non-coding upstream 86787 49640220 ~ 49658591 (+)
G813769 NA non-coding upstream 142980 49601968 ~ 49602398 (+)
G813747 NA non-coding upstream 181560 49563553 ~ 49563818 (+)
G813870 NA non-coding downstream 61768 49811934 ~ 49812165 (+)
G814225 NA non-coding downstream 88872 49839038 ~ 49839290 (+)
G814281 NA non-coding downstream 128914 49879080 ~ 49879349 (+)
G814313 LOC106610265 non-coding downstream 191303 49941469 ~ 49941746 (+)
G814336 NA non-coding downstream 234260 49984426 ~ 49984958 (+)
G813139 NA other upstream 629760 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 738668 48962187 ~ 49006710 (+)
G813071 NA other upstream 785387 48959749 ~ 48959991 (+)
G812688 LOC106572106 other upstream 1174785 48545454 ~ 48570593 (+)
G812143 NA other upstream 1763077 47982001 ~ 47982301 (+)
G815428 NA other downstream 1046048 50796214 ~ 50800381 (+)
G815610 NA other downstream 1328281 51078447 ~ 51078942 (+)
G815767 casz1 other downstream 1595206 51345372 ~ 51346494 (+)
LOC110532349 LOC106591969 other downstream 2573105 52323001 ~ 52325924 (+)
LOC110532368 LOC106572016 other downstream 2976255 52692676 ~ 52734929 (+)

Expression


Co-expression Network