LOC110532299 (LOC106572073)


Basic Information

Item Value
gene id LOC110532299
gene name LOC106572073
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 49820974 ~ 49824793 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616064.2
CTTCCCTGCCCTTCCTCAAATTCAAAGAGCCGGTGTCCTAGCAAAACGTGAGGTGCTGTTTTTCTTTTAGAATTTGGTTTTATCTGTTTACAAGTAATTGTACAGTATATCAATAGTCATATTGTATCATTGGGCTACTCGATATTTCAACTCACTGGATACGAAGGCGTTTACGTTTAAGGACCAAATAACGAGTCTTCGCAAGATCCGGATGAGACGAGGATTGGTGCCGCATTTTTTTCCTACAGCAACGTGGGTCACGCGCCAGATATAGTTGAACTGGATCCCAGATCGGAATATTTGTAGAATAAATCGTCAATTTCGTGGATTACAGGAATGCTGCTGTCTAAATTAAACTCATTCGCTCACATCTCCACCGTTGATATGCCGGCGAAAATCCAGCTTCAAGTTCACCAAGggaaagagagggagcctTTCGAGAAGCTTTACCAGGTTGGCTCTGTGCTGGGAAGTGGCGGTTTTGGGACGGTGTATTCTGGCACAAGAATTTCAGATGGCGCACTGGTTGCTGTCAAACATGTGGCTAAGGATCGGGTCTCGGAGTGGGGAGAGCTGCCAAATGGCTCTCGTGTCCCCATGGAGATTCTACTCATGAAGAAAGTTGGGAATGGAGCTCGGGGCGTGATAAAGATGCTGGACTGGTACGAGCGACTTGACAGCTTTATTATTGTCATGGAACGGCCGGAGAAGGTCAAGGACCTTTTTGATTTCATCACTGAGAAAGGTGCTTTACCAGAGGAGCTGGCAAAGAACTTTTTCTGTCAGGTTCTTGAAGCTGTTCGACACTGCCACAACTGTGGGGTTGTACACAGGGACATCAAAGATGAAAACATCCTCATTGATCTTCAGACGGGCGAAATGAAGCTTATTGACTTCGGATCCGGGGCATTGCTCAAAGACACTGTTTACACCGACTTCGATGGCACTAGAGTGTACAGTCCACCTGAATGGATCAAATACCATCGGTACCATGGGCGGTCAGCAACGGTTTGGTCTTTGGGTGTCCTGCTGTATGACATGGTGTGTGGAGATATCCCCTTCGAGCAGGACGAGGAGATTGTACAAGGCCAGGTGCTCTTCAGACGAAGAATCTCCACAGAGTGCCAGCAGTTGATCAAGTTGTGCCTGTCCCTGAGGCCTGCTGAGAGGCCATCGTTTGAGGACATCATCAATCACCCATGGATGCAGAGCACAGTGTCctcagcagagcagagcacagaGATCAGACTGCACAGCATCAGTCATGAGCCTACTGCGTTCACCACGGTGGTGGCCCAATGACTGTCACTGCACTGACCGAGACTAGTAGAACACAGAGAACTGACGTGGCTGTACACCAAAGACAATATGGACTACACAGAAGGAAGTTACATTTGTATTTAcatatctccctctttctcttgtgGCCAGACCCCACCTGTTCACTCTCCTTTTGGACTTCATGAAAACGTAACATCCTTAATGGCTACTTAATTGGACACTGTAATATCAAAAGCTATTCTCACCCCTACGAAGGACTTGCTCTGTAATATTGGCTGTGGTGTGAGAGTATGTACACCAGAAAGGACGAAGTCCATCCCTATTCATGTGATTTGTTCTGCTGAAGGCATGAACAAGTGGACAGTCTTTGTtacataactagctagctaccaaccAGCCATTGTACTCTGCCCCGCCTCACTGATGAGTGGGTGTCACAGGAAGCGAAGAGGAGCAAATTGAAGTGCCTTTGGTGTGTCAGATTGTTGGGGACCCTGGAAATACTTGAATTTCATGAAGCCAACAAATcacttttttcttttcttttttttactttacAGGGTTTTATTTCCTGCTTTCGTCTTATAGGACTAGATCAGTAAAGCCTTTGCCATTTTCCAATACCGACAGCAGCCAGAGAACCTCCTATAGTACACACAAACCTGTGCAAACAAAAACCGGAAGACTTACCTCACTTTCCTGCATCCGCCTCCGAGCTTTTAACGCCTGTCTACACACAACTACCACTCACCCAGACGTGAATGCACACAGTAATGCAAAGCGCCACACTAAAATACTAAATGCTTTTTTGTTCGAGTAAACATGTCTGTATCTTTCACCTCACAGGCTAGGAATAAGGCTATTGTGAATAATATTTGTGTGATTTTTCTCACTCGAGCTGTGtggaattatttatttatttatagagAATTTCGGCTGTATATTTCATTCCACAGTTGTTGAAGGGCCCACagattatttaaatgtattttgaccATATTTATGGCTTGAAATCTTCTGAGcagatgtttgtgtatgtgtatatatatatatgtttgtgtgtgtaaataaCCTTCAAAGCACTTCCATTTTAATGTATGTTGAAAGTCTACTGATGGTAACTGTTATTTGTCTGCTGTTGATTTGGATGAATTGACAATGTTCTGAGTAAGCAAGTATGTGTCATACATCAACATTGTTTTCACCTCTTGTTGCACGATTGCAGCTTTGTTTTGTTTTCATCCAAATTAGAATTGTAAATTAAATGAACTATTTTTATACGAtttcaataaatatttttttaaccttga

Function

NR:

description
serine/threonine-protein kinase pim-1-like

GO:

id name namespace
GO:0048593 camera-type eye morphogenesis biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007634 optokinetic behavior biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04702 PIM1; proto-oncogene serine/threonine-protein kinase Pim-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616064.2 True 2591 mRNA 0.43 6 49820974 49824793

Neighbor

gene id symbol gene type direction distance location
LOC110531196 NA coding downstream 2217 49806132 ~ 49818757 (-)
LOC110532296 myh7b coding downstream 49087 49755020 ~ 49771887 (-)
LOC110532281 LOC106572093 coding downstream 757469 49060071 ~ 49063505 (-)
LOC110532280 etbr2 coding downstream 814207 49003288 ~ 49006767 (-)
LOC110532275 LOC106572096 coding downstream 841840 48962163 ~ 48979134 (-)
LOC110532301 NA coding upstream 157604 49982397 ~ 49985562 (-)
kcnd1 LOC106572071 coding upstream 175317 50000110 ~ 50072237 (-)
LOC110532303 LOC106572070 coding upstream 313391 50138184 ~ 50180854 (-)
pnck LOC106572314 coding upstream 555446 50380239 ~ 50401918 (-)
ppp1r3da LOC106572067 coding upstream 569540 50394333 ~ 50401913 (-)
G814203 NA non-coding downstream 2921 49817851 ~ 49818053 (-)
G814199 NA non-coding downstream 7496 49813226 ~ 49813478 (-)
G814192 NA non-coding downstream 16670 49803857 ~ 49804304 (-)
G814189 NA non-coding downstream 20347 49800400 ~ 49800627 (-)
G814129 NA non-coding downstream 110824 49709494 ~ 49710150 (-)
G814238 NA non-coding upstream 22654 49847447 ~ 49847727 (-)
G814260 NA non-coding upstream 36374 49861167 ~ 49861414 (-)
G814842 NA non-coding upstream 66058 49890851 ~ 49908910 (-)
G814862 NA non-coding upstream 94936 49919729 ~ 49919995 (-)
G814863 NA non-coding upstream 96351 49921144 ~ 49921386 (-)
G814157 edem2 other downstream 84863 49735145 ~ 49736111 (-)
G814020 NA other downstream 354212 49463957 ~ 49466762 (-)
G813357 LOC106578276 other downstream 905270 48915435 ~ 48915704 (-)
G812840 NA other downstream 1311880 48508645 ~ 48509094 (-)
LOC110532252 fkb1a other downstream 1534544 48278174 ~ 48286453 (-)
G815044 NA other upstream 393563 50218356 ~ 50218697 (-)
G815045 NA other upstream 394074 50218867 ~ 50219848 (-)
G817848 NA other upstream 2328489 52153282 ~ 52153642 (-)
LOC110532367 LOC106572017 other upstream 2838660 52663417 ~ 52668762 (-)
G818117 NA other upstream 2902374 52727167 ~ 52731623 (-)

Expression


Co-expression Network