LOC118966067


Basic Information

Item Value
gene id LOC118966067
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 49882156 ~ 49917857 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053276.1
TGTCTCCCTACTCAGacattgcatgcatcaaccaatggttgcatgGCAATACATCAacatcgactgacagattgcttTAACATTTGATGCGGTTAGCTGAtacgtaaaatacctatccaggcgagGTAAGATCTGGCAGGCGTCAGATGAAATTAACAAAAAGCCACTCACTTATTTTGTGTGTAAAACCTATCCTCCTCTAATAAGCTGCTGGAGCAAAACAACaaGCCCATCCCTCCCCCTGTGTCATCGATGGCCAGCCAGCGTACATGATGAGACGTCTCCTGAGGGTTCGACCACGAGGCAGGGGTTTCCCGTACCTGGTTGATGGTCCGGAGGAGAAGTGCTTGGTTCCCGCTAAAGACATCTTGGACCCGGCCCTCATCGCCGACTTTCACCGCCGGcaccccagtcaaccagGCCCACTTTCACTATGTGCTGGGGAAGTTGTTCTATGCTTAGCTGACAGAGACAGGAGATACAAGAGCCCACTGTGTTCCAAGGACCTTGGCTCTCCTCTATGCACAGCACTCTGGGGAATTCCTACAGatgcacaattgagagcatcctgtcgggctgaatcaccgcctggtacggcaactgcacca
>XR_005053277.1
TGTCTCCCTACTCAGacattgcatgcatcaaccaatggttgcatgGCAATACATCAacatcgactgacagattgcttTAACATTTGATGCGGTTAGCTGAtacgtaaaatacctatccaggcgagGCCCATCCCTCCCCCTGTGTCATCGATGGCCAGCCAGCGTACATGATGAGACGTCTCCTGAGGGTTCGACCACGAGGCAGGGGTTTCCCGTACCTGGTTGATGGTCCGGAGGAGAAGTGCTTGGTTCCCGCTAAAGACATCTTGGACCCGGCCCTCATCGCCGACTTTCACCGCCGGcaccccagtcaaccagGCCCACTTTCACTATGTGCTGGGGAAGTTGTTCTATGCTTAGCTGACAGAGACAGGAGATACAAGAGCCCACTGTGTTCCAAGGACCTTGGCTCTCCTCTATGCACAGCACTCTGGGGAATTCCTACAGatgcacaattgagagcatcctgtcgggctgaatcaccgcctggtacggcaactgcacca

Function

NR:

description
GRB2-associated-binding protein 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053276.1 False 608 mRNA 0.51 4 49882156 49917857
XR_005053277.1 True 506 mRNA 0.54 4 49882156 49917857

Neighbor

gene id symbol gene type direction distance location
LOC110533019 gss coding upstream 78694 49800763 ~ 49803462 (+)
gss gss coding upstream 85125 49788722 ~ 49797031 (+)
LOC110531195 trpc4ap coding upstream 131990 49745378 ~ 49785055 (+)
LOC118966066 trpc4ap coding upstream 138830 49741863 ~ 49743326 (+)
edem2 edem2 coding upstream 144700 49725707 ~ 49737456 (+)
si:dkey-8e10.3 LOC106572072 coding downstream 38984 49956841 ~ 49968731 (+)
LOC110532304 LOC106566492 coding downstream 267608 50138196 ~ 50205006 (+)
LOC110532305 LOC106572068 coding downstream 306987 50224844 ~ 50359369 (+)
fam217b LOC106572066 coding downstream 484707 50402564 ~ 50408370 (+)
LOC118966068 NA coding downstream 505589 50423446 ~ 50428094 (+)
G814281 NA non-coding upstream 2807 49879080 ~ 49879349 (+)
G814225 NA non-coding upstream 42866 49839038 ~ 49839290 (+)
G813870 NA non-coding upstream 69991 49811934 ~ 49812165 (+)
G813822 NA non-coding upstream 141556 49729408 ~ 49740600 (+)
G814313 LOC106610265 non-coding downstream 23612 49941469 ~ 49941746 (+)
G814336 NA non-coding downstream 66569 49984426 ~ 49984958 (+)
G814483 NA non-coding downstream 275958 50193815 ~ 50198790 (+)
G814493 NA non-coding downstream 299487 50217344 ~ 50217613 (+)
G813139 NA other upstream 766538 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 875446 48962187 ~ 49006710 (+)
G813071 NA other upstream 922165 48959749 ~ 48959991 (+)
G812688 LOC106572106 other upstream 1311563 48545454 ~ 48570593 (+)
G812143 NA other upstream 1899855 47982001 ~ 47982301 (+)
G815428 NA other downstream 878357 50796214 ~ 50800381 (+)
G815610 NA other downstream 1160590 51078447 ~ 51078942 (+)
G815767 casz1 other downstream 1427515 51345372 ~ 51346494 (+)
LOC110532349 LOC106591969 other downstream 2405414 52323001 ~ 52325924 (+)
LOC110532368 LOC106572016 other downstream 2808564 52692676 ~ 52734929 (+)

Expression


Co-expression Network