si:dkey-8e10.3 (LOC106572072)


Basic Information

Item Value
gene id si:dkey-8e10.3
gene name LOC106572072
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 49956841 ~ 49968731 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616065.2
gtgtgggcaTGTGCCCATATTGGTACATCCAATAGTGACAGAACCTTTAATCTTCCAAGAGCAGTTAAGGTGCTTCTGCTTTATAAAGCagcatgtgtgtcagtgtgtgtgtcagtgtgtgtgtcagtgtgtgtgtaagagtgtgAGTGCCCTTTGCAGCAGCCAGTTTTGTAATCAGCTGTCGAAGTGGGCTCCGAGTCTTAGCTGTAGCCGAGTGGTAGCACTCTCCTCTAACCCTGGTCCACTCAGCCAGCCACACAGCCCTGTGATCCACAGCACAGCTGCAGTAAGatttgagacagagagagagagatgatcgaGCTGGGCCTTGCAGATGGCAGTCTGATCGATGAACTGATTGCGCTGACGGCTCAGAGCCTAAGCCACTTGGAGATCAAAGAGCACTTCAACATTATCAAGGAGATCGGCCGGGGGAAGTATGGCAAGGTTCTGCTGGTCACCCATCGCTGCAGGGGAACACCGATGGCTCTTAAAGTGATGCCAAAAGCCTCCACCAAGCTCCAGGGATTCTTACGGGAGTACTGCATCTCCTTGCACCTATCCTGCCACCCCTGCATCGTAGGTCTCTTCGGAATCGCCTTTCAATCTAATGAGCACTATGGCTTTGCCCAGGAGCTTGTTATTGGGAGGGACCTTTTTGCTGTCATCCAACCAAAAGTGGGTATCCCAGAGAATGCAGTGAAGCGCTGCGTCCTACAGATTGCCAGTGCCCTGGAGTTCATCCACGAGCACGGCCTGGTCCACCGCGACATCAAACCTGAGAACATCCTGCTGCTGGACAGCCACTGCTGCCGGGTAAAGCTGGCTGACTTCGGCCTGGCTCAGACGAGAGGCACTCTGATTCGCTTCATCTCCGGCACGCTGCCCTACATGGCCCCAGAGCTGTGTGCCGTTGCCCTGGAGGAGGGCCAGAAGGAGGTGACGGCGCCCCCGCTCAGCGTGGAGCCCAGCCTGGACACCTGGGCCTTCGGAGTGGTCATCTTTTGCATCCTCACTGGCTACTTCCCCTGGGAGCGCTGCGTGACCTCAGATGACTTCTACCAGGAGTTTGCTGATTGGTGCCAGGCACCCACCGTGGAGGAAGTTCCACCCTTGTGGAAGAGATTCACCCCGGCTGCCATGGAAATGTTCAGCAGGCTGTTGGAGCTCAATGCTAACAACAGAAGCACAGTAGGGGAGGTCAGGTCCTATGTGGAAAAGGACTGGTTGATGCCGACGCTAGTGGACACAAACGGACTGCAACCGGAGAATGGCAAGGTCAGTGCCACCTGCTCCACCCCTAGTGTGTGTAGGAGTAGTCCTGTCCACCAGGAGGTGGAGTAAATGTCTTCAGTGGAACGGTGTCTGAGGTATCTGTCTACACCTCCAGCTCATGGTATCAACTATCCAATTTACAGGGAGCAAGCACAAGGTGTGCATTCGACCCCACTCTTACCATGCACTGATAGGTAGGGTAACTGAATTATACTCAACGTCAGTCCAGAGAGCCACACAAGGGGAAAAAGCTCTGGTAGGATACGAGTGTACTGTAAAAGCAGCACTATTTGAGTGTGAGTGAGCTCATACTATTCTGTGTGTATGTACACAATATTGGTAACCTGATAAATTTAGCAATGTTACGAAAGAGTTTGTATCTACTGTAACACAAGAGCAGCTTATGCTATATTGTGTGTAACTACACAACGTTGGTGACCTGAGAAATATACTGTAACATAGAACTTGTACCTAGCATAGGAGCAGCTATTTTCAGAACAATGATTTATATTCTGTGTTTTAGAATCTCTCACTGCACAGAAGACAAGCATTATAATAATTTCATAGAGGGAGAGTGTGCACTGTGCGTTCAAGCTGGCTTAGTGGCAGTGTTCACTTTGGCAGTGCTCAAtgttctctcaaatgtttttgtAGTGTGTCACACTGTACAGGCTGTTCCGTGAATGAGGCTACCTCAGTTTGTCTATTTCTGTGCATACTCTCATTGTTCATGAAAGATTCATATTCAAATATAGACATACAGAAAATACATTAACTGTATAATGAATGTAATGTAATAGACTGAATATGAAATGGGTATGGGTAAATATCCAGAGTGTAATTTTTAGGTATTCCACAACTGACCCCAGAAAATGACTGTCACACTGAAAGCTGTTTCAAGTTCACATTGTTTCAAATCAACTTAATTTAAAGCAAAGGCAACAAATTGGGAGCTGCTGCATAACAATTAACTCTGTCTCCCTAAATAGAAATTGAAGTTCAAATCATCCTTTTTGTGCACTGTAAAAAAAGAGAAAGGTTGTTTTTACGGTATCTTATTGGCAAACAGGTACAGTATGTTACCGTAAATACCGTAAACTTTACAGTAGTATACTGTTAAACCAAAGTTTATTTGAAATTTATGGTAACATATTGTAACTTTGTTTTATTCGAATCAAGTACATAATTATTGTGTATAGGATGCACGTAAAGTTTTTGACACAGTGTTTGAGTATGCCTTTTGGTATGAACAAATAAACATAA
>XM_036988236.1
gtgtgggcaTGTGCCCATATTGGTACATCCAATAGTGACAGAACCTTTAATCTTCCAAGAGCAGTTAAGGTGCTTCTGCTTTATAAAGCagcatgtgtgtcagtgtgtgtgtcagtgtgtgtgtcagtgtgtgtgtaagagtgtgAGTGCCCTTTGCAGCAGCCAGTTTTGTAATCAGCTGTCGAAGTGGGCTCCGAGTCTTAGCTGTAGCCGAGTGGTAGCACTCTCCTCTAACCCTGGTCCACTCAGCCAGCCACACAGCCCTGTGATCCACAGCACAGCTGCAGTAAGGTGATGGAAGGACAGAGGGACACTCGCTAAACCTGAGCTTCACCACTACGCTAACTGGCACATGCATGCAACTTGCATGCAGGTTGTGCgtatgggtttgtgtgtgtgtgtgtgtattgtgtttgttGCAACAGATGTGTGCATATTTATTGATCGAGACCCTTGTGATACTCTACTATAAAGatttgagacagagagagagagatgatcgaGCTGGGCCTTGCAGATGGCAGTCTGATCGATGAACTGATTGCGCTGACGGCTCAGAGCCTAAGCCACTTGGAGATCAAAGAGCACTTCAACATTATCAAGGAGATCGGCCGGGGGAAGTATGGCAAGGTTCTGCTGGTCACCCATCGCTGCAGGGGAACACCGATGGCTCTTAAAGTGATGCCAAAAGCCTCCACCAAGCTCCAGGGATTCTTACGGGAGTACTGCATCTCCTTGCACCTATCCTGCCACCCCTGCATCGTAGGTCTCTTCGGAATCGCCTTTCAATCTAATGAGCACTATGGCTTTGCCCAGGAGCTTGTTATTGGGAGGGACCTTTTTGCTGTCATCCAACCAAAAGTGGGTATCCCAGAGAATGCAGTGAAGCGCTGCGTCCTACAGATTGCCAGTGCCCTGGAGTTCATCCACGAGCACGGCCTGGTCCACCGCGACATCAAACCTGAGAACATCCTGCTGCTGGACAGCCACTGCTGCCGGGTAAAGCTGGCTGACTTCGGCCTGGCTCAGACGAGAGGCACTCTGATTCGCTTCATCTCCGGCACGCTGCCCTACATGGCCCCAGAGCTGTGTGCCGTTGCCCTGGAGGAGGGCCAGAAGGAGGTGACGGCGCCCCCGCTCAGCGTGGAGCCCAGCCTGGACACCTGGGCCTTCGGAGTGGTCATCTTTTGCATCCTCACTGGCTACTTCCCCTGGGAGCGCTGCGTGACCTCAGATGACTTCTACCAGGAGTTTGCTGATTGGTGCCAGGCACCCACCGTGGAGGAAGTTCCACCCTTGTGGAAGAGATTCACCCCGGCTGCCATGGAAATGTTCAGCAGGCTGTTGGAGCTCAATGCTAACAACAGAAGCACAGTAGGGGAGGTCAGGTCCTATGTGGAAAAGGACTGGTTGATGCCGACGCTAGTGGACACAAACGGACTGCAACCGGAGAATGGCAAGGTCAGTGCCACCTGCTCCACCCCTAGTGTGTGTAGGAGTAGTCCTGTCCACCAGGAGGTGGAGTAAATGTCTTCAGTGGAACGGTGTCTGAGGTATCTGTCTACACCTCCAGCTCATGGTATCAACTATCCAATTTACAGGGAGCAAGCACAAGGTGTGCATTCGACCCCACTCTTACCATGCACTGATAGGTAGGGTAACTGAATTATACTCAACGTCAGTCCAGAGAGCCACACAAGGGGAAAAAGCTCTGGTAGGATACGAGTGTACTGTAAAAGCAGCACTATTTGAGTGTGAGTGAGCTCATACTATTCTGTGTGTATGTACACAATATTGGTAACCTGATAAATTTAGCAATGTTACGAAAGAGTTTGTATCTACTGTAACACAAGAGCAGCTTATGCTATATTGTGTGTAACTACACAACGTTGGTGACCTGAGAAATATACTGTAACATAGAACTTGTACCTAGCATAGGAGCAGCTATTTTCAGAACAATGATTTATATTCTGTGTTTTAGAATCTCTCACTGCACAGAAGACAAGCATTATAATAATTTCATAGAGGGAGAGTGTGCACTGTGCGTTCAAGCTGGCTTAGTGGCAGTGTTCACTTTGGCAGTGCTCAAtgttctctcaaatgtttttgtAGTGTGTCACACTGTACAGGCTGTTCCGTGAATGAGGCTACCTCAGTTTGTCTATTTCTGTGCATACTCTCATTGTTCATGAAAGATTCATATTCAAATATAGACATACAGAAAATACATTAACTGTATAATGAATGTAATGTAATAGACTGAATATGAAATGGGTATGGGTAAATATCCAGAGTGTAATTTTTAGGTATTCCACAACTGACCCCAGAAAATGACTGTCACACTGAAAGCTGTTTCAAGTTCACATTGTTTCAAATCAACTTAATTTAAAGCAAAGGCAACAAATTGGGAGCTGCTGCATAACAATTAACTCTGTCTCCCTAAATAGAAATTGAAGTTCAAATCATCCTTTTTGTGCACTGTAAAAAAAGAGAAAGGTTGTTTTTACGGTATCTTATTGGCAAACAGGTACAGTATGTTACCGTAAATACCGTAAACTTTACAGTAGTATACTGTTAAACCAAAGTTTATTTGAAATTTATGGTAACATATTGTAACTTTGTTTTATTCGAATCAAGTACATAATTATTGTGTATAGGATGCACGTAAAGTTTTTGACACAGTGTTTGAGTATGCCTTTTGGTATGAACAAATAAACATAA

Function

NR:

description
serine/threonine-protein kinase SBK1-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08858 SBK; serine/threonine-protein kinase SBK

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616065.2 False 2538 mRNA 0.46 4 49956841 49968731
XM_036988236.1 True 2721 mRNA 0.46 4 49956841 49968731

Neighbor

gene id symbol gene type direction distance location
LOC118966067 NA coding upstream 38984 49882156 ~ 49917857 (+)
LOC110533019 gss coding upstream 153379 49800763 ~ 49803462 (+)
gss gss coding upstream 159810 49788722 ~ 49797031 (+)
LOC110531195 trpc4ap coding upstream 206675 49745378 ~ 49785055 (+)
LOC118966066 trpc4ap coding upstream 213515 49741863 ~ 49743326 (+)
LOC110532304 LOC106566492 coding downstream 216734 50138196 ~ 50205006 (+)
LOC110532305 LOC106572068 coding downstream 256113 50224844 ~ 50359369 (+)
fam217b LOC106572066 coding downstream 433833 50402564 ~ 50408370 (+)
LOC118966068 NA coding downstream 454715 50423446 ~ 50428094 (+)
si:dkey-178k16.1 LOC106572064 coding downstream 476821 50445552 ~ 50557497 (+)
G814313 LOC106610265 non-coding upstream 15095 49941469 ~ 49941746 (+)
G814281 NA non-coding upstream 77492 49879080 ~ 49879349 (+)
G814225 NA non-coding upstream 117551 49839038 ~ 49839290 (+)
G813870 NA non-coding upstream 144676 49811934 ~ 49812165 (+)
G814336 NA non-coding downstream 15695 49984426 ~ 49984958 (+)
G814483 NA non-coding downstream 225084 50193815 ~ 50198790 (+)
G814493 NA non-coding downstream 248613 50217344 ~ 50217613 (+)
G814494 NA non-coding downstream 250861 50219592 ~ 50219804 (+)
G813139 NA other upstream 841223 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 950131 48962187 ~ 49006710 (+)
G813071 NA other upstream 996850 48959749 ~ 48959991 (+)
G812688 LOC106572106 other upstream 1386248 48545454 ~ 48570593 (+)
G812143 NA other upstream 1974540 47982001 ~ 47982301 (+)
G815428 NA other downstream 827483 50796214 ~ 50800381 (+)
G815610 NA other downstream 1109716 51078447 ~ 51078942 (+)
G815767 casz1 other downstream 1376641 51345372 ~ 51346494 (+)
LOC110532349 LOC106591969 other downstream 2354540 52323001 ~ 52325924 (+)
LOC110532368 LOC106572016 other downstream 2757690 52692676 ~ 52734929 (+)

Expression


Co-expression Network