kcnd1 (LOC106572071)


Basic Information

Item Value
gene id kcnd1
gene name LOC106572071
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50000110 ~ 50072237 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616066.2
aggagaggagctaAGGCTAAGCATGACAATCACTCCCTCACTCTCCGGTGTGCGATGTGGTTCGATTCCAGGAGAGGGGCTGCTTATAATTCTCTCATTGCCTTTGCTTTCTCTTCCACATTGTCTGCAGCTTTAATGCATGGTATAAAAAGGGACGACCATACAAGGAATAGAAATGCCTAAGACTCAAACGTTTCCTTTCACAAGACCTCTGACACCAAAGAAATCGATTACACTTAAGGTTTGGTTGTGCAGAGAATccaagggacagagagaggcatCCATCATCAAAGCTGGAGAGCAACagtgagagggaaagggagaaagcAATGTGTCTATCTTGCAACGTCGGCGACCATCATCACAATTGAATACGAATTTGAAAAACCACAGCGCTGCAACTAATCTGTCTTCTGAGAAAGGGGAGGCAGTGAGCGAAGGTCGGAgacttattatttattttatttttaacactACTGAAAAGCCATATACAGTATTGTTCTACAATATTACTGTGCTATTATTTATACAAACCCTGTCAATAGTCTGATGTTTTATGAATCAGGCCTAGTTTTCCTGAGCTATTCCAATGGCCTGAACTTTAGGTTCAGTCCCCAACTGCCTTATCTTGACCCTTTTCTTTGATGATGTAAACACTATCATCTCCCTGCCTGCCTTACATTTCCCTCCTACTGAAGCCAATGCACAAACAAACTGACAGACTGGAAATGGAGGCAAGCCAACCCGGTTGTTGAGGCCTTCAGTTCGGATGATTAGATCGGATATACCTATACTTTTCCTCCTGATCCGGAAAAAGGCCCAGAAATAGCCCTCAAGTACCTAAACAACACTCCGTACCTTTACACACCATCCCGGCTTACTCCTGAAACAAAAGCTACTAAACAAAAATGGCTGCTGGAGTTGCAACATGGATGCCCTTTGCTCGGGCAGCAGCCGTAGGCTGGCTACCACTGGCCCAAAAGACCATGCCCAAGCCTCCTGTGGACAAAAAGAGTCGCAGTGATGAGATCTTGTTTGTAAATGTGAGTGGACTACGCTTTCAGACATGGAAGAACACCTTGGACCGTTACCCAGACACCCTTCTAGGCAGCTCAGAAAAGGAGTTTTTCTACAATGAGGAAACTCAGGAATATTTCTTTGACAGGGATCCAGAGATGTTCCGCCATATACTAAACTTTTTTCGAACAGGCAAGCTACATTACCCCCGACATGAATGCATTCAGGCTTTTGAGGAAGAGCTGGCTTTCTATGGCATAATACCGGAGATCATAGGTGACTGCTGTATGGAAGAGTACCGGGATCGCAAGAAGGAGAACCAGGAGCGTTTGGCTGAGGACACCGAGGCAGAGAATGCTGGAGACGCTCCCCTGCCCCCAGACGCCACATTACGAGAGAGGCTATGGAGGGCCTTTGAGAACCCTCACACAAGCACCATGGCCTTGGTTTTTTACTATGTCACTGGCTTCTTCATCGCTGTGTCTGTTATTGCCAACGTTGTGGAAACAGTTCCCTGCCGACCAATCAAAGGGAGTATAAAGGACCTGCCATGTGGTGAGAAGTTTTCAGTGGCCTTCTCTTGTTTGGACACGGCCTGTGTGCTTATCTTCTCCTTTGAGTACCTCATGAGACTGTATGCTGCCCCCAGCCGCTGTGATTTTGCGCGTTCGGTGATGAGCGTGATAGACGTGGTGGCCATCTTGCCCTTCTACATTGGCCTTGTCATGCCAGAGAATGAGGAAGTCAGTGGGGCCTTTGTCACCCTGCGAGTCTTCCGGGTGTTCCGTATCTTCAAGTTCTCCCGTCACTCTCAGGGGCTGCGTATCTTGGGCTGCACGCTGCAAGCCTGCGCCTCGGAGCTgggcttcctcctcttctccctcaccATGGCCGTCATCATCTTTGCCACCGTCATGTTCTACGCTGAGAAAGGCACCAAGGGAACCACGTTTTCCAGCATCCCTGCCTCCTTCTGGTACACCATCGTCACCATGACAACACTGGGATATGGAGACATGGTTCCAGACTCCATAGCGGGCAAGATATTTGGCTCCATCTGCTCCCTCAGTGGCGTGCTGGTGATTGCTCTACCTGTGCCTGTTATAGTCTCCAACTTCGCAAGGATCTACCACCAGAACCAAAGGGCAGATAAGATGAGGGCACAgcagAAAGTGCGCCAGGCAAGGATTCGAATGGCTAAAAAAGGGGCCACCAATGCATTCTTGCAGCACAAAGAGGATGGGGGATTGCAGGATGGTGATGGTGACAGCACACCTCTTTGTGTGAAGAACAGGTCCGCCTTTGAGCACCAACATCATCACCTATTGCACTGCTTGGAGAAAACCACAAATCACGAGTTCACCGATGAAGTCACCTACAGCGAGGTGTGTGTGACCGACTCATTGGGCTTCCGCACCAGCCGCAGCACTTCGCTGTCCAGCCAGCAGGGGGCCACCACAACCTGCTGCTCCCGCCGGGCCAAGAGGAGGGCCTTCCGCCTTGCCAACTCCACTGTCTCTGTCAGCCGGGGCAGTGTGCAGGAGCTGGACACGCTGCATGTCACCAAGACTCCTGCTGGTACCCAGTACCCACAGAGtcGCTCCAGTCTAAATGCCAGGACTGAAAACCTGAAGCTGAACTGTGATGACTACACGGCAGCCATCATCAGTATCCCCACTCCCCCAGCCAACACTCCTGATGAGAGTCTACCTAACTCCCCCGCCATCCCTGGCATCCTACGCAACTCTCGCTCCAGTACCTTCAACACCCAGGAAACTGTCAAGATCTCCTCTTTATAACCCCCTGAAGCACAGGACCTTGACCCATTGCACAAAAGAAGAGGAAGGGGGCCCATCAGAGAAGAACATGGGAAAGAAGGACATTCAAGGATGATACCACACACTCTTTGCAAATGCTTCACTCCAATACCAACGTAATGTCTACTGAATAGAGGTAGGGCTAGCGTGAATCTTtttcatttattcattcatttgaTTTGAACCATCCATGTGACGTGCTGGGGAAGTTACTGTTACTGGTTGATCTTTTGGTCCAGGGAGTTACGGGGGGGTGGGGGAGTTAGTAAATTGAGTGAGTATCACAGAGACTCACGGAGACTGTGAGCTGAGCAGGAACAGATGACAGCGTGTGAAACAGGAATCTACATGCCTCTTGGACTCAGAGAACGGACACATATGGATGGTGTGGTTGGTAAGAGTGTTTTTCAACAATAATATACCCACCGTGGCATCGAAGGCCTTTTTACTTTTCAAGATATGCAACGTTAGAACAAGCAGGAAAAAcgaatatacagtacataatgtGTGTCAAAAAATATTGCAGGGAGAGATTATACAGATGATGAATAATGACAAAATTATATTGATACATAAATACACCTTTAGAGAGAGAAATATTAGTTCTGCATTCTGCAATAGATTTCTTCACACAAACTCGGATGAAAATAAAGGAGTGATTGTTAGATGGTAGTGCATATGTAACATATTTTGTATCATACGTCTCTAAATCACATGCATCTTCAAACCTTACCAAAAAATGTCAGTGTAATGACGAGCTTACTACAGCTATGCATGTTCCTGTACAATAGATGGTGGAGAATAGAACTGCTGATATTAGTGGTGTCAGATATGACGAGCTCATAGGTTTTTTGCATGGTACCTTATTCTTTCCCGCAGAACAGTTAGTTGTATTTCTTTCTCCTGACAACATTGTGGAGTAATAATGATGTCACGTGCTGCACCAGAAGTGTACattaggttaaaaaaaaaaaaaagaatgaaataaaaatattgaGGCATGTTCCTCGCCAGAATGCGAAGTGGGTGCGTATGattgtgtggtctgtgtgtggtaGGTTGGGAGGACTTGTGTTTATTGATCACAAATATGCATGGATACCGTTGTAGGTATTTTACCTGTTTCTTTTGGGAAATAAAATGTAGAGGAGGGATTCAACAGCATCCATTGTCAATGAGAAAGAAATTCGTGAGAAGAGGTTACCAGTAAGAAAAGTTCACAGTTACCTTTCGTTGACTTCTCTTATTGTAATATTGTGTTACAGGGTTAAGTGTATGCAAGCCCGTTGATGGCTGTGTAATTGACAAACAACGTTTTTTGTTAAACATGCTAACATATCGGTGCTGCTACTGTACTTCATTGGACTTTACTGTTGTCATGGCTCCAGTTCTGTTTATGAGATCTGGTGTTTGCAATAACCGTTGTAATTATTTTACCGCAAACTTTGGCAAATCCTACTTTTTTTCTCGGATGATTATTATTTGCATAATATTGCAATGAAAGACTTCTCTGTAACTGTGCACTACAGCTGTTCTAAAGTTACTTTAGTATTTATTCATATAATGCAGATAGGAGTAGAATGAGCACTATGTCGACCTCACACATACTTGCTGACATTCATTTCCAAACATATATAGCGATATGATTCACATTATTTACACAATGTCGTTTTCTCATGGAAGTGACAACAGATGAGTAAAGTCGTGTCATATGCTTTATACGTGTATGCTGTATGAATACAACACACGTTTGATGGGAAGATTATATAGTAATTATAAGAAGCTTATACATACCACTCCTAATGAAGTGTTTACCTGACCCAATGATAAGTGACCGGATGTGTAGGCTCAGGAGAGGTGGCGCCAGCCGGTACTCAGTCAGCGATAGAGATGCACTGATTCCCTAGAGGACGACGAGCAGAACAGATCAAAAGCACAGTTGTCTATATTCTATTCCACAAATAAAGCAATTAGAATTCAGACAATTGTGTCGCCTTTT

Function

NR:

description
potassium voltage-gated channel subfamily D member 1-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG:

id description
K04891 KCND1, KV4.1; potassium voltage-gated channel Shal-related subfamily D member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616066.2 True 4833 mRNA 0.45 7 50000110 50072237

Neighbor

gene id symbol gene type direction distance location
LOC110532301 NA coding downstream 14548 49982397 ~ 49985562 (-)
LOC110532299 LOC106572073 coding downstream 175317 49820974 ~ 49824793 (-)
LOC110531196 NA coding downstream 181353 49806132 ~ 49818757 (-)
LOC110532296 myh7b coding downstream 228223 49755020 ~ 49771887 (-)
LOC110532281 LOC106572093 coding downstream 936605 49060071 ~ 49063505 (-)
LOC110532303 LOC106572070 coding upstream 65947 50138184 ~ 50180854 (-)
pnck LOC106572314 coding upstream 308002 50380239 ~ 50401918 (-)
ppp1r3da LOC106572067 coding upstream 322096 50394333 ~ 50401913 (-)
ttll9 ttll9 coding upstream 338681 50410918 ~ 50421336 (-)
LOC118966203 NA coding upstream 445907 50518144 ~ 50518200 (-)
G814870 NA non-coding downstream 73940 49925843 ~ 49926170 (-)
G814863 NA non-coding downstream 78724 49921144 ~ 49921386 (-)
G814862 NA non-coding downstream 80115 49919729 ~ 49919995 (-)
G814842 NA non-coding downstream 91200 49890851 ~ 49908910 (-)
G815018 NA non-coding upstream 83906 50156143 ~ 50193556 (-)
G815043 NA non-coding upstream 144886 50217123 ~ 50217772 (-)
G815056 NA non-coding upstream 170230 50242467 ~ 50252211 (-)
G815142 NA non-coding upstream 283032 50355269 ~ 50359362 (-)
G815154 NA non-coding upstream 303875 50376112 ~ 50376464 (-)
G814157 edem2 other downstream 263999 49735145 ~ 49736111 (-)
G814020 NA other downstream 533348 49463957 ~ 49466762 (-)
G813357 LOC106578276 other downstream 1084406 48915435 ~ 48915704 (-)
G812840 NA other downstream 1491016 48508645 ~ 48509094 (-)
LOC110532252 fkb1a other downstream 1713680 48278174 ~ 48286453 (-)
G815044 NA other upstream 146119 50218356 ~ 50218697 (-)
G815045 NA other upstream 146630 50218867 ~ 50219848 (-)
G817848 NA other upstream 2081045 52153282 ~ 52153642 (-)
LOC110532367 LOC106572017 other upstream 2591216 52663417 ~ 52668762 (-)
G818117 NA other upstream 2654930 52727167 ~ 52731623 (-)

Expression


Co-expression Network