LOC110532304 (LOC106566492)


Basic Information

Item Value
gene id LOC110532304
gene name LOC106566492
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50138196 ~ 50205006 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616072.2
AGAGGTACACGCGGAACTTAAAGGCTAATCATCGCGGTAGAGACGGGAGCGGCAAGGCGCTCTGCGTTTGTCTCGAATTGTATTGATAGGCAAAAGCGGTCAACCACTGCCTGGCAATTAAAAAGTGAAATTGACATCCATAGTCGCGCAGATGGAGCACCTATCGAGGTTCGTAGGTCAGATGTCCTTGGCAGATGACAGCAGAGCGGAGGGCAACATCTCATCTGAGTATATTAATATTCGTGCTCAGACTTCTGTCATCAAGAAAGATTTTGGCCTTACCACGATAGCGGGGCAACTGATGGAGAATGTAAAGAAGAACCGTTACAGAGACATTTTACCATATGACCAGACCCGTGTGCCCCTGACTCTACTGACAAATGAGAATGATTTTGACTATATCAACGCCAGCTTCATTAAGGGTGCAACAAAGACCAAAAAATACATAGCGACCCAAGGGCCTCTGAGACACACTTTGGTGGACTTCTGGCGAATGATTTGGCAGTATGATGTAAAGgtcataATCATGGCTTGCAGAGAAATTGAAATGGGAAAAAAAAAGTGTGAGTGCTACTGGACTACTTTCAAAGAAACAACCCATTTTGGTCCCTTTATTGTGTCAAATTTTGAGGAATCCAGCCCAAATGAGGAAGTAGTTTTCCGCACTCTGACAGTGAGATATCATGAGGAAACACGGAAAATATCTCAATTCCAATACACAGCTTGGCCTGATCATGACGTTCCATACACCGTTTATGGTATTTTAGGAATGATGGATATGGTGCGCAAAGACCAAGGAAACAACACTAGCCCTGTTCTCATCCACTGCAGTGCTGGTTGTGGAAGAACAGGGGTGATTTGTGCCTTGGATTATGTTCACGATCTTCTTGTCACAAAGCAAATTAAAGAAGATTTCAGTATCATGAAGATTGTAGTGGAACTAAGGAGTCAGAGGCCATCAGCAGTTCAGACAAAGGAACAGTATCGGTTTGTGTTTTCTGCCGTGGCTTATATGTTTGAGAAGGCTTTACGGTCAGCTGAGAACAACTCCCAGAATCTCACCAAGAGTAACCAACCTTTATATGATGATGTTGCATCTGTGAAGACATCTCCACCGACAACATCAGCCATCGCTCAGACACTTGCAGAAAGATATTCTAATGTGCAGTACAGAGCGCCTCGGCCTCGTCAGCAAAAGATGAATGACGTATATGCCATGGTCAACAAGTCCAAACAGCTCCCGCCACCAGCCTCTTCCACCGCCCCTCTGGCAGGTCTCCATCACTATGACAACGAAGAGCTGGGCGTCCCAAAATGCCATGTAGGtgctctttacagcatggtcaagcCCAAGAGCAGGTGTCTTCCAGCCAAACCGCCACCAGCTGTCTCACCCATATATGACACAGCCGGACTAGCCAATCACAGGCTAGCTGAGGCCTCGGCAGGGGAGGACCAGAGTGGCTATGAGCTGGTCGCAGCTGATGGTTATTCCTCGGCCGAAGATGACTATGAGTATGTCTCAAATCCCATCAAACGAATGACCAACAGCTGCACTCCTGGTAGCATGGAGTTCAACTGTCGCATTAAAAAACCCAAAGGGCCTCGGGATCCACCGGCAGAGTGGAGTCGTGTGGAGAGATGACATAGCAGCCATATACCAGGCCTGGacacatctttatgtttgacaaGCAATGGGAATGggctctttatttatttttacttgctGTGAACATCTACTGTATGTGATCACAGAAATACAgttaactatctatctatcttttgTAACCCATTTGAGTCTGTATATATTTCAGTTCTTGTGATTTATATTACTGATGAACGAAAAAACTATATTAAACCACTTTCAATTCTGAGACAGGTATTGGTTTTGAATACCATTTACCGATTGAAGTGCAGTGCTGCTATAGTGTGATTGTAGTAACCAACAGGTGGCACTATAGTAACAGGAGATAATTAGTTTTTTCCATTATTGACGTTTCAGGTATTGTAAAATGTGTTTTCACAGGGAGACTCATGCTTTATTGCCCTTGATGTCTACTAATTGCTGGTAACAAGGACTTACAATAAAGACAACAATTTCTTCAAGGTT
>TU926478
CCATTTTTATTGACACTGCATGAATATCATTTAGCTGGAGAAACAGTTGACAAATGCATACATCTGAAGGAAAGGAATAGTCCACTGGGGAAGCAGTCGAGTGCTGGGTTGTATATTTGATCTTTTAATAAAACCCTGAATGATTATATCTGTTAGTAGTTATGAGGACTTTGCTGCAGCCGAGTTTGGCAATTCAAACATTTAGGTAAAAGGGGAGAGGATTATTTAAATAAAGCACACAATCTTTAATGTATTGGAAAAAGTGCAGAGTGTACTTATCTACAGTATCACCTATTATACCCAATATACTCATCTGAATCAAAGTCCATTTTGTCTCCAATGGGTGTCTGGGTGTTCAAAGAAAGTCCCGGAACACATCCGCCAAACATGCCTATGGTACATTACTGTATAAACTTAGCATTACACAGATtactgctaaaaaaaaaaagaatttacAAATGTTAAAGATAAAAgtaatgttaaaaacatcctcaAATAAGGGAAACTAGTGTGAAAGGCTAACACCAGTACACACATTCACGTCCACTTAAACAATCCCACATTTCATCTGCCAAGCTACTGTTGATTAGTCACGTTGAGAAATCACTTAcaataatacatttgctaaattaGTCAAAGGCAAACTAAGAGCCCAACTTCACATGATCCAAGCTACCCTCATCTGGACCGTCACTCCAGTACACTGGGCCAGTTCTTCTAATAAAAACGGTAAAGGCCGGGTAACAACGCCAGATAATTATTTGTGAGGAGTTTCCAGTCCATGTGAAACTCAGAGACCATTCTGATGAGCTTGTCCAGAGGGAATGGAAGAGTTTCACTCAGACTACCAACACTGCTGTTAGACCTTAGCCAGGGGGAGATTAGTTCTCAAACTAATTAATCCTCCCAAAGAGAATCCTCTGTTTCTTAGTGCATCTATAATCTCATATCTTAACAACATATCAAAGTGGAGTTAAACCGGAATTACATCCACAAATCTAACCAATTGGGGATAGAGAAAGCAGCCAAAGTGACATTTGAAAGCAGGGCACAAAGCAGGCATCTAGCCAGTTCCTGGACAGCCTATTCAAGTTGACAGCAGATGTTCAAGCAGCCAAGGCCTCATCCTCTGCTGCAGTCACAGCCCTGGTGCTGGGTGCAAACTAAAAGAGCACAGAGATCTAACCCAGTGAGTCGAGACACCGGTGGTTTGGTCCAGTCCGCAATGCTAGTCAGACGATAGGCTATGCAATCTATTGAGGTTTTTGTCTAATTACTGTACTACTGGCTTTAGCATACTTGCTATTTTCCCCAGACATATTCAACTGGACACCGCATCTATAATCTATGCCGGATGTAAATCTTTGACAATAATTTTGCTTCATATGCAATACTTCTAACTCCGAGACCGATAAATTACTACAGTTGATTTTTCATATTCATATATACAGGattcatacaaaaaaaaaaaaaaaaacaagagttGCAGAGTTTGAAGTTTAGCGAAATGAATACGAGTACAGGCAAAACACAACAGCTTAAGCCTCTCTGTATGAGTAAGCAGAATGTCTCTTGTTATTCACGACATTAAACAATCTCTTGAAGATGTGAACCAGTAATGCACTGTCCGAGAGATTTCCTGGCATCCTGGTTCCTGCCAGCGTTGCATTCTTCAGAgcaccccagtgtgtgtgtgtgggTGTGTTTTCACAGGGAGACTCATGCTTTATTGCCCTTGATGTCTACTAATTGCTGGTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616072.2 False 2110 mRNA 0.44 15 50185465 50205006
TU926478 True 1759 lncRNA 0.40 2 50138196 50204968

Neighbor

gene id symbol gene type direction distance location
si:dkey-8e10.3 LOC106572072 coding upstream 216734 49956841 ~ 49968731 (+)
LOC118966067 NA coding upstream 267608 49882156 ~ 49917857 (+)
LOC110533019 gss coding upstream 382003 49800763 ~ 49803462 (+)
gss gss coding upstream 388434 49788722 ~ 49797031 (+)
LOC110531195 trpc4ap coding upstream 435299 49745378 ~ 49785055 (+)
LOC110532305 LOC106572068 coding downstream 19838 50224844 ~ 50359369 (+)
fam217b LOC106572066 coding downstream 197558 50402564 ~ 50408370 (+)
LOC118966068 NA coding downstream 218440 50423446 ~ 50428094 (+)
si:dkey-178k16.1 LOC106572064 coding downstream 240546 50445552 ~ 50557497 (+)
cntn3a.2 LOC106572060 coding downstream 760711 50965717 ~ 51041645 (+)
G814336 NA non-coding upstream 200507 49984426 ~ 49984958 (+)
G814313 LOC106610265 non-coding upstream 243719 49941469 ~ 49941746 (+)
G814281 NA non-coding upstream 306116 49879080 ~ 49879349 (+)
G814225 NA non-coding upstream 346175 49839038 ~ 49839290 (+)
G813870 NA non-coding upstream 373300 49811934 ~ 49812165 (+)
G814493 NA non-coding downstream 12338 50217344 ~ 50217613 (+)
G814494 NA non-coding downstream 14586 50219592 ~ 50219804 (+)
G814590 NA non-coding downstream 160792 50365798 ~ 50372376 (+)
G814594 NA non-coding downstream 168556 50373562 ~ 50373769 (+)
G813139 NA other upstream 1069847 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 1178755 48962187 ~ 49006710 (+)
G813071 NA other upstream 1225474 48959749 ~ 48959991 (+)
G812688 LOC106572106 other upstream 1614872 48545454 ~ 48570593 (+)
G812143 NA other upstream 2203164 47982001 ~ 47982301 (+)
G815428 NA other downstream 591208 50796214 ~ 50800381 (+)
G815610 NA other downstream 873441 51078447 ~ 51078942 (+)
G815767 casz1 other downstream 1140366 51345372 ~ 51346494 (+)
LOC110532349 LOC106591969 other downstream 2118265 52323001 ~ 52325924 (+)
LOC110532368 LOC106572016 other downstream 2521415 52692676 ~ 52734929 (+)

Expression


Co-expression Network