ttll9 (ttll9)


Basic Information

Item Value
gene id ttll9
gene name ttll9
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50410918 ~ 50421336 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616081.2
CGTCAGTGTGTCGTGTACTGACTTAAAAGGGGGGTCTACCAGTGCTGTACgctttttctctcttcctatgATTTGggaaatatgtaaataaatgttcAAAGATTGTGTGTAATTCATTGGAATTCATGAGTATAAATACAGCTTTTTCATTCATGAGGTTGCCATGACAACATGTGTTGTCAAACCAGACTGCTGGATACAAGGGTCCTTATGGTTATCAAAAAAGAAGAGAGGGGGATGGAAGAAGTTGTGTACGTTACAAATGTGGCCTAACAAATACCATTCAGGATGTCTTGCGACAAAGACCAGGCTGGATGGAGGTCAAAGATGATGGAGAATGGGATTTTAACTGGTGTGATGTTGGGTGGCTGAGGGAGAATTTCGACCACTCCTACATGGAAGAACACGTGAGGATATGCCATTTCCGCAATCATTATGAGCTGACGCGCAAGAACCTAATGGTGAAAAACCTGAAGAGGTACCGCAAAACCCTTGAGAGGGAAGCTGGCCGCATTGAAGCGTCCAAATGTGACTTTTTCCCCCGGACCTTTGAACTACCCAGTGAATACCACCTCTTTGTGGAAGAGTTCAAACGGAGCCCGGGCAGCACCTGGATCATGAAACCAGTTGCAAGATCTCAGGGGAAGGGCATTTTCCtatttcaaaaactgaaagacATCATggactggaaaaagGATGGGAGTCGCtcagaggagcagagagatgagaCTCAAGTGGAGAGCTACGTTGCACAGCGCTACATAGAAAATCCCTATCTTATCAGTGGGAGAAAATTTGACTTGAGGGTTTATGTATTGGTTACATCATATATCCCACTGAAGGCATGGTTATATCGAGATGGTTTTGCCCGATTCTCCAGCACCCGATTCTCTCTCACCAGCATTGATGACCAGTATGTCCATCTCACCAATGTGGCAGTGCAAAAAACAGCACCAGATTATGATCCTGAAAAGGGCTGTAAGTGGCAGATGCAGCAGCTTCGGCGATACCTGACTGCGAGGCATGGCACAGAGACCATAGAGGCTCTGTTTAAGGACGTTGACAACATATTTGTCCGTAGCCTGCAGAGTGTGCAGAAAGTAATCATCAACGACAAACACTGCTTTGAGCTCTATGGCTATGACATCCTACTGGATCAGGACCTCAAACCGTGGCTGATAGAGGTGaacgcctctccctctctcaccgccAGCAGCCAAGAGGACTACGAGATGAAGTGTTGTCTGCTGGAGGATACCTTACACATTGTGGATATGGAGGGCAGATTGACTggcagagagaagagggttggtggCTATGACCTTATGTGGAACGATGGACCCGTCTACAGAGAAGATGTCAACCTAGAGACACTGGGCAGTGCCTGTTTCACTGCAAACACACACCTCGGCTGTGTAAACGACAGAAAGAAGCAACTCCGTCAGCTTCTAAAACCATTTCCAAGCAAGAAGAGGATATGACACACTACCCAAAAAGATTTTCCAATTGAAATCAACAAGCCTACATATCACCACAGTTTCCATCAATATTTCATAAATATGTATTTTCTTACAACCTCACTCAGATGGTGAGGTCACACTCACACAATGACATCACTCGATGATTCAGTGCAAAGCATATTTATTTCTATGCCTTACAAACAACTGCATTCAACATTGAGAAAATATGCACCACTTTCTGTGTGCGTGTGAATGTTTACGACAACTCTACTCCCTGATCTATGGCTTAGATACTTTACATTAATATTGAATAAATAAAGTGCAATTTAACACA
>XM_021616080.2
ACGTCAGTGTGTCGTGTACTGACTTAAAAGGGGGGTCTACCAGTGCTGTACgctttttctctcttcctatgATTTGggaaatatgtaaataaatgttcAAAGATTGTGTGTAATTCATTGGAATTCATGAGTATAAATACAGCTTTTTCATTCATGAGGTTGCCATGACAACATGTGTTGTCAAACCAGGTAGAAACTAGCTACTCCTTTCTGGTATCAATGGTCAAACTACTcgacagctagctaacgttaatgctGCTAGCTAAACATTTAGCTAATTAACCTTTTAGCTGACCCCGGTAAACAGATTTGGCGAATGCTACCACGAAAACATGTCAAAGAATAAGACTGCTGGATACAAGGGTCCTTATGGTTATCAAAAAAGAAGAGAGGGGGATGGAAGAAGTTGTGTACGTTACAAATGTGGCCTAACAAATACCATTCAGGATGTCTTGCGACAAAGACCAGGCTGGATGGAGGTCAAAGATGATGGAGAATGGGATTTTAACTGGTGTGATGTTGGGTGGCTGAGGGAGAATTTCGACCACTCCTACATGGAAGAACACGTGAGGATATGCCATTTCCGCAATCATTATGAGCTGACGCGCAAGAACCTAATGGTGAAAAACCTGAAGAGGTACCGCAAAACCCTTGAGAGGGAAGCTGGCCGCATTGAAGCGTCCAAATGTGACTTTTTCCCCCGGACCTTTGAACTACCCAGTGAATACCACCTCTTTGTGGAAGAGTTCAAACGGAGCCCGGGCAGCACCTGGATCATGAAACCAGTTGCAAGATCTCAGGGGAAGGGCATTTTCCtatttcaaaaactgaaagacATCATggactggaaaaagGATGGGAGTCGCtcagaggagcagagagatgagaCTCAAGTGGAGAGCTACGTTGCACAGCGCTACATAGAAAATCCCTATCTTATCAGTGGGAGAAAATTTGACTTGAGGGTTTATGTATTGGTTACATCATATATCCCACTGAAGGCATGGTTATATCGAGATGGTTTTGCCCGATTCTCCAGCACCCGATTCTCTCTCACCAGCATTGATGACCAGTATGTCCATCTCACCAATGTGGCAGTGCAAAAAACAGCACCAGATTATGATCCTGAAAAGGGCTGTAAGTGGCAGATGCAGCAGCTTCGGCGATACCTGACTGCGAGGCATGGCACAGAGACCATAGAGGCTCTGTTTAAGGACGTTGACAACATATTTGTCCGTAGCCTGCAGAGTGTGCAGAAAGTAATCATCAACGACAAACACTGCTTTGAGCTCTATGGCTATGACATCCTACTGGATCAGGACCTCAAACCGTGGCTGATAGAGGTGaacgcctctccctctctcaccgccAGCAGCCAAGAGGACTACGAGATGAAGTGTTGTCTGCTGGAGGATACCTTACACATTGTGGATATGGAGGGCAGATTGACTggcagagagaagagggttggtggCTATGACCTTATGTGGAACGATGGACCCGTCTACAGAGAAGATGTCAACCTAGAGACACTGGGCAGTGCCTGTTTCACTGCAAACACACACCTCGGCTGTGTAAACGACAGAAAGAAGCAACTCCGTCAGCTTCTAAAACCATTTCCAAGCAAGAAGAGGATATGACACACTACCCAAAAAGATTTTCCAATTGAAATCAACAAGCCTACATATCACCACAGTTTCCATCAATATTTCATAAATATGTATTTTCTTACAACCTCACTCAGATGGTGAGGTCACACTCACACAATGACATCACTCGATGATTCAGTGCAAAGCATATTTATTTCTATGCCTTACAAACAACTGCATTCAACATTGAGAAAATATGCACCACTTTCTGTGTGCGTGTGAATGTTTACGACAACTCTACTCCCTGATCTATGGCTTAGATACTTTACATTAATATTGAATAAATAAAGTGCAATTTAACACA
>XM_036988243.1
CGTGACGTCAGTGTGTCGTGTACTGACTTAAAAGGGGGGTCTACCAGTGCTGTACgctttttctctcttcctatgATTTGggaaatatgtaaataaatgttcAAAGATTGTGTGTAATTCATTGGAATTCATGAGTATAAATACAGCTTTTTCATTCATGAGGTTGCCATGACAACATGTGTTGTCAAACCAGGTAGAAACTAGCTACTCCTTTCTGGTATCAATGGTCAAACTACTcgacagctagctaacgttaatgctGCTAGCTAAACATTTAGCTAATTAACCTTTTAGCTGACCCCGGTAAACAGATTTGGCGAATGCTACCACGAAAACATGTCAAAGAATAAGACTGCTGGATACAAGGGTCCTTATGGTTATCAAAAAAGAAGAGAGGGGGATGGAAGAAGTTGTGTACGTTACAAATGTGGCCTAACAAATACCATTCAGGATGTCTTGCGACAAAGACCAGGCTGGATGGAGGTCAAAGATGATGGAGAATGGGATTTTAACTGGTGTGATGTTGGGTGGCTGAGGGAGAATTTCGACCACTCCTACATGGAAGAACACCTGACGCGCAAGAACCTAATGGTGAAAAACCTGAAGAGGTACCGCAAAACCCTTGAGAGGGAAGCTGGCCGCATTGAAGCGTCCAAATGTGACTTTTTCCCCCGGACCTTTGAACTACCCAGTGAATACCACCTCTTTGTGGAAGAGTTCAAACGGAGCCCGGGCAGCACCTGGATCATGAAACCAGTTGCAAGATCTCAGGGGAAGGGCATTTTCCtatttcaaaaactgaaagacATCATggactggaaaaagGATGGGAGTCGCtcagaggagcagagagatgagaCTCAAGTGGAGAGCTACGTTGCACAGCGCTACATAGAAAATCCCTATCTTATCAGTGGGAGAAAATTTGACTTGAGGGTTTATGTATTGGTTACATCATATATCCCACTGAAGGCATGGTTATATCGAGATGGTTTTGCCCGATTCTCCAGCACCCGATTCTCTCTCACCAGCATTGATGACCAGTATGTCCATCTCACCAATGTGGCAGTGCAAAAAACAGCACCAGATTATGATCCTGAAAAGGGCTGTAAGTGGCAGATGCAGCAGCTTCGGCGATACCTGACTGCGAGGCATGGCACAGAGACCATAGAGGCTCTGTTTAAGGACGTTGACAACATATTTGTCCGTAGCCTGCAGAGTGTGCAGAAAGTAATCATCAACGACAAACACTGCTTTGAGCTCTATGGCTATGACATCCTACTGGATCAGGACCTCAAACCGTGGCTGATAGAGGTGaacgcctctccctctctcaccgccAGCAGCCAAGAGGACTACGAGATGAAGTGTTGTCTGCTGGAGGATACCTTACACATTGTGGATATGGAGGGCAGATTGACTggcagagagaagagggttggtggCTATGACCTTATGTGGAACGATGGACCCGTCTACAGAGAAGATGTCAACCTAGAGACACTGGGCAGTGCCTGTTTCACTGCAAACACACACCTCGGCTGTGTAAACGACAGAAAGAAGCAACTCCGTCAGCTTCTAAAACCATTTCCAAGCAAGAAGAGGATATGACACACTACCCAAAAAGATTTTCCAATTGAAATCAACAAGCCTACATATCACCACAGTTTCCATCAATATTTCATAAATATGTATTTTCTTACAACCTCACTCAGATGGTGAGGTCACACTCACACAATGACATCACTCGATGATTCAGTGCAAAGCATATTTATTTCTATGCCTTACAAACAACTGCATTCAACATTGAGAAAATATGCACCACTTTCTGTGTGCGTGTGAATGTTTACGACAACTCTACTCCCTGATCTATGGCTTAGATACTTTACATTAATATTGAATAAATAAAGTGCAATTTAACACA

Function

symbol description
ttll9 Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cilium. Orthologous to human TTLL9 (tubulin tyrosine ligase like 9).

NR:

description
probable tubulin polyglutamylase TTLL9 isoform X2

GO: NA

KEGG:

id description
K16603 TTLL9; tubulin polyglutamylase TTLL9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616081.2 False 1794 mRNA 0.44 14 50410918 50421331
XM_021616080.2 False 1953 mRNA 0.44 14 50410918 50421332
XM_036988243.1 True 1924 mRNA 0.44 14 50410918 50421336

Neighbor

gene id symbol gene type direction distance location
pnck LOC106572314 coding downstream 9000 50380239 ~ 50401918 (-)
ppp1r3da LOC106572067 coding downstream 9005 50394333 ~ 50401913 (-)
LOC110532303 LOC106572070 coding downstream 230064 50138184 ~ 50180854 (-)
kcnd1 LOC106572071 coding downstream 338681 50000110 ~ 50072237 (-)
LOC110532301 NA coding downstream 425356 49982397 ~ 49985562 (-)
LOC118966203 NA coding upstream 96808 50518144 ~ 50518200 (-)
cntn3a.1 LOC106572063 coding upstream 142226 50563562 ~ 50666849 (-)
LOC110532314 LOC106572061 coding upstream 379060 50796359 ~ 50942409 (-)
dffa dffa coding upstream 761948 51183284 ~ 51202396 (-)
casz1 casz1 coding upstream 913138 51334474 ~ 51597143 (-)
G815154 NA non-coding downstream 34454 50376112 ~ 50376464 (-)
G815142 NA non-coding downstream 51556 50355269 ~ 50359362 (-)
G815056 NA non-coding downstream 158707 50242467 ~ 50252211 (-)
G815043 NA non-coding downstream 193146 50217123 ~ 50217772 (-)
G815018 NA non-coding downstream 217362 50156143 ~ 50193556 (-)
G815174 NA non-coding upstream 5945 50427281 ~ 50428081 (-)
G815176 NA non-coding upstream 9214 50430550 ~ 50430800 (-)
G815177 NA non-coding upstream 9798 50431134 ~ 50431348 (-)
G815179 NA non-coding upstream 12618 50433954 ~ 50434181 (-)
G815182 NA non-coding upstream 15719 50437055 ~ 50437255 (-)
G815045 NA other downstream 191070 50218867 ~ 50219848 (-)
G815044 NA other downstream 192221 50218356 ~ 50218697 (-)
G814157 edem2 other downstream 674807 49735145 ~ 49736111 (-)
G814020 NA other downstream 944156 49463957 ~ 49466762 (-)
G813357 LOC106578276 other downstream 1495214 48915435 ~ 48915704 (-)
G817848 NA other upstream 1731946 52153282 ~ 52153642 (-)
LOC110532367 LOC106572017 other upstream 2242117 52663417 ~ 52668762 (-)
G818117 NA other upstream 2305831 52727167 ~ 52731623 (-)
LOC110531203 NA other upstream 3584211 54005547 ~ 54065096 (-)
cep104 cep104 other upstream 3863711 54247726 ~ 54294920 (-)

Expression


Co-expression Network