dffa (dffa)


Basic Information

Item Value
gene id dffa
gene name dffa
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 51183284 ~ 51202396 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616102.2
CTCAGGACTTCCGTTTTTGCAGATATGTCAAGAATACCGTAAACGACTGTTAGGTTTGGTTTGgtttagatatatattttttacattttattttattttttatatgcaTTTATTTTATTACAATTTCAAAATCAGAACTTTGACTTTAAATCGCATAACACTACATTTCCCATGACATCATGTCAGGACATCCGTGTTCGCATTTGAATCTGCCAAGAAGGTGCATGCAGTAAACTTCCGTAAGGTTATTTAACTTTCGGCATAACAAAAGAGTGATGTCTGAACTAAAACCTTGTAAGGTGTGTAATTTTACGCGACAACAATCATACGGTTTGGTTGTTCCTTCTCTGGACCAACTAAAGATTAAAGGAAGCGAATCTCTTGGGTTTAGCCCAAGTACCTCCGTCTCTGTGGTATTAGAAGATGATGGGACAATAGTTGAAGATGAGGCCTATTTCTTGTGCTTACCTACAAACACAAAGTTTATGCTCTTGCATGAAAAAGAGACGTGGGCCCCACTACGAAGAATTGATGGCGGCACAGCTTGGATGACCAGGGAGTCTGTGAATCTTGAGAGCGATGCTGTGGACAGCTCAGTCAGTGGGATCGAGCCCTGGTTCTACCTGGCCCAGCAACTCAAGAAGGACCTGGCCAGCATCATACTGATGTCGGAGGCAGAATTACAAACCCTAGTGGACGTGCCTTGTTTAGAGCTGGCCTCAGCCCTGGGCTTCCCGGAGAGGAAGGCGCTGAATCTCCAGGACACTCTACAGAGAGTGTTGGACCGCAGGGAGGAAGAGCGACAGTCCAAGGAACTGCTCCAGCTCTACCTCAAGGCAGTGGAGAGAGAAGACGGTCAAGAGGCAGAGCCTAGAAATGACGGGTCAGGTGATGGGGATGTGACAGACGGGCTGGCGGTAGATTCGGCATCAGGATTCATGTCCAGAACGCTGATGGTTCTCAAGGGTAAAACGAGCCCTGAGACCAGGCTCTCCAATGAGGAGCTGCAGATGGTGGTGAACAAAGGTGCACGGGCCATGGAGCAAGTCCTGGGCTGGGACTCTGAGAGGACATTGGTGCTGCTGCAGGCATGCGAGGAGCAACTGAGCAGGCGGCTCCAGCAGGTTCAGGCCATGCAGTACCTCCGTAGCCACACACAACAACAGGCCAGCACGCAGCCCTCCGACAAGAGCCAAGCCACACAAGCCAAGCGCAGCAAGTAAGGAGTAGGGGGAAGTTGCCACTACACGCTGATCTTTGGTGATTATGGTTAGCCActtatggttaggattagggaaggggaaactgatcctaaatctgtacttagggaaacttcaccccagagCCAGCTAGTAATACCCCTCTGTCTCTGACCACAGAACACACACTATCTGCCTTAAGACTGAGACGATAAGTATTTGGATGGTAAAGCATTTTTTCTTGAAATCGAACAATGaccatgaggttaaagtgcacACTGTGAGCATTAACTTGAGGGTATTTATCTATATCGGGTGAACCATGTAAAAATTTGGTCACTTTTTGTACATGGTCCCCCCCCCCAATTCACTTATTTGTGCGTTAAAGTAGTAAaatgttaagtatttggtcccatatttgtAGCACAGAAAGACTACATCAAGTTTGTGACTACAAACATGTTGGATTATCCTGactgaattgtgaataatgatgagtgggAAAGTTACAGATGCAAAAATATAATTCCCCCAAggcatactaacctctcaccattataataacaggggaggttagcattttgggggggggtggatgatatttgtgcatctaactttctcactcattgtTCACgtttcattcaggattatccataatcatggtacaTTCATGTAAAAGTGTTAGAAATTCAGAAACAAATTCTgtttttatttacaataaaaaggATGCAATACATTATTTAATTAATGGGCacaaataatctgaaacacaaccaaagcaAATGCATCCACCAAGTTTGTAGAGTCAAAATCTTGATGTAAttattgcgtgctaggaatatgggaccgaatactaaacttttgactactttaataaacATATAAGTGACTGTGTCGTAATACCTTTGGTatcctaaaatggggggactacgtacaaaaagtgctgtaatttctaaacagttcacccgatatggatgaaaataaccTCAAATTAAATCTGGCACTTTACCTCCATAGTAATTGCTTGATTTCAAGTCCAAACTTTGAGTATAGAGCCAAAATAAGAATAAATGCTTCACTTTCCCAATAATTACGGAGGGCACTGTATATCGCCTCCTGGTATCAATAAATGCTCATAAACGCTGACATTATTTGCCAAATGGCTTTGGTGCCCCTTTTGTGAGTAAACCACATGATGTCTATCTCTTTAGGTACATTAAGTAAAAGTGTTATTAGCATAGGTAGATGTTAATGACCAGAACAATTAGGAATGGACCAACTGTGCAACCCTTTTGATATGTTGTCTTGGTCTACTCCGCCGGTACTTTACCTACTCAGGAGCAAAGTGTGACACAATACCTGATTCTTGCCCCTGGAAGCTGTAACAAAATTATGGTTGATGTTAACTTAAATTGTAAGCAAATACCTTGGACAATCCATTTGTGGTCAAAGATTAGTAACCCAGTAGTAATCTGTTGACATTATATTTAATCCTATTTTCCTGAAGATTTAAAATGAGAGCTAATTGTTCCATTCCTGTCAATTTTGTATACTGAATCATTGATATGCCTCCTAAAACCTTGCCAAATACTTAGCCTATTTCTTCGGCCTATTTTGCTTTCCCTTTTGACTCTACTTGTTTTGACTGCTCTACATATTATTAAccaatatacataaaatataactTAGAATTCATTCTTTTTGGGAAACAACCAGAATTGGTTTATCTATCTGTACTTAAACCCTGTATATTTAGGAATGTTAATGTAAGAAAGGATATCAGATTTGATATGTAATTGTGATGTAAGCGTGCATCCGTGTAGTGTGGGCCCATGTGAGCTATCTGGTTGTATTGACAGGACATCCTTGTTAATGGAACAGACTTAAAGGGCTGTAAGATCACATTTGAAACCAGTCATTTACAACAAGGACATGGGGCCAGCAAGGAGGCACATGTCATGACAATGAGATGTCAACAGATTTATATATACAGAAAAGTGTATTGAAGGCATTTATGGTGACAAATGGATGGAGAAACATGTTATCTTCACCCGTGTTATGATGTGATTCTTGTACTCCACGTGAATATTAATTGCAATGCTCTGAAGTCCATTACGCACTCGTTATTGCTTCCAATGTTCCTTGAAAGAAAAAGGTGTGTGTTCAGTTTGAAATGGTGCATCTTGGGAGCCCTCTGTATGAAATGAATGAACATGTACGgactgtacatatattttatcATTGAGCCACAGAGTTGTGTAATCAAAGTTTTGCATTGTGATTAATGAGGCTTTTTTTTTAATGGAGCTGTTTCAAATGGAACTGACGTGGCAAGCGGAGTGTGTTAAGTATGACAGCTTTTCTACAATAAAGCGCACAATCCTGACA

Function

symbol description
dffa Predicted to enable deoxyribonuclease inhibitor activity. Predicted to be involved in regulation of apoptotic process. Predicted to act upstream of or within apoptotic DNA fragmentation. Orthologous to human DFFA (DNA fragmentation factor subunit alpha).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K02310 DFFA, DFF45; DNA fragmentation factor, 45 kD, alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616102.2 True 3587 mRNA 0.41 6 51183284 51202396

Neighbor

gene id symbol gene type direction distance location
LOC110532314 LOC106572061 coding downstream 240875 50796359 ~ 50942409 (-)
cntn3a.1 LOC106572063 coding downstream 516435 50563562 ~ 50666849 (-)
LOC118966203 NA coding downstream 665084 50518144 ~ 50518200 (-)
ttll9 ttll9 coding downstream 761948 50410918 ~ 50421336 (-)
pnck LOC106572314 coding downstream 781366 50380239 ~ 50401918 (-)
casz1 casz1 coding upstream 132078 51334474 ~ 51597143 (-)
sst6 LOC106572312 coding upstream 519436 51721832 ~ 51723447 (-)
pgd pgd coding upstream 524659 51727055 ~ 51739900 (-)
kif1b kif1b coding upstream 546460 51748856 ~ 51854412 (-)
ube4b ube4b coding upstream 653313 51855709 ~ 51903774 (-)
G816183 NA non-coding downstream 8416 51171416 ~ 51174868 (-)
G816164 NA non-coding downstream 80273 51102810 ~ 51103011 (-)
G816161 NA non-coding downstream 84427 51098492 ~ 51098857 (-)
G816133 NA non-coding downstream 127043 51055653 ~ 51056241 (-)
G816088 NA non-coding downstream 197226 50980746 ~ 50986058 (-)
G816288 NA non-coding upstream 118000 51320396 ~ 51320752 (-)
G816290 NA non-coding upstream 119057 51321453 ~ 51321686 (-)
G816291 NA non-coding upstream 119771 51322167 ~ 51322424 (-)
G816293 NA non-coding upstream 128743 51331139 ~ 51331342 (-)
G816294 NA non-coding upstream 129878 51332274 ~ 51332556 (-)
G815045 NA other downstream 963436 50218867 ~ 50219848 (-)
G815044 NA other downstream 964587 50218356 ~ 50218697 (-)
G814157 edem2 other downstream 1447173 49735145 ~ 49736111 (-)
G814020 NA other downstream 1716522 49463957 ~ 49466762 (-)
G813357 LOC106578276 other downstream 2267580 48915435 ~ 48915704 (-)
G817848 NA other upstream 950886 52153282 ~ 52153642 (-)
LOC110532367 LOC106572017 other upstream 1461057 52663417 ~ 52668762 (-)
G818117 NA other upstream 1524771 52727167 ~ 52731623 (-)
LOC110531203 NA other upstream 2803151 54005547 ~ 54065096 (-)
cep104 cep104 other upstream 3082651 54247726 ~ 54294920 (-)

Expression


Co-expression Network