lzic (lzic)


Basic Information

Item Value
gene id lzic
gene name lzic
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 51921146 ~ 51924442 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616133.2
GAGAGGATTAAAATAGAGACATATGATTGGACAAAAAATAACCGGAAAGGACAAGGCCGCACCCACGGAATAAGAGTCAAGTCTAGGTGGGATTCAGCTTTTGTCAGATGGTGGAAGCATGGCTTCTCGTGGCAAATCAGAAACTGGGAAACTAAAACAAAACATGGAGGAGCAACTGGACAGATTGATGCAACAGCTCCAAGATTTGGAAGAGTGCAGAGAAGACCTAGAAGAGGAGGAGTATGAGGAGACCAAGAAGGAAACCCTGGAGCAGTTGAATGAGTTCAATGAGTCTCTGAAGAAGATGGTGACAGGCAACATGACACTGGTGGATGAGCTTGGAGGAATGCAACTGGCAATCCAGGCTGCCATCAGCCAAGCTTTCAAGACCCCCGAGGTGATCCGAATGTTTGCCAAGAAGCAACCGGGGCAGTTGAGAACCAGATTAGCAGAGATGGACCGTGATGTCATGGTGGGAAAACTTTCGAGGGATGTGTACACTCAGCAGAAGGTGGAGATCCTCACTGCCTTGAGAAAACTGGGCGAGAAGCTTACAGTCGAAGACGAGACTTTTCTGGCTGAAAATGTGACCGCAACTCTCAGCCAATTTGAAAAAATCACTGCAGACCTCGGATCAGAAGACAAGATAATGGCTTTAGCTAGTTCTGGTGTGGAGAAAACCAAGGTATAGAGGATAATCAGGTGTTGTCCAATGTCTATGTTGTTTAACATCAAGTGTTTCCACCCAATAACAGTGCCATAATATTGATAATGTAAATCAATCATGCACTTAGACCGTACTTGCTTTTAAAGAGTAAAGTTAACCTTttgtacactttttttttttctgaTGATGATTGTAAAACTTGGTATGCATTTGGTACTAGAGTAGTCTATTTATAATTTGAACAGTCCATCGGTCATCCTTTTTGTTAAGTGTGGCTCAGACATTTTGAAGGCTTTAAATTCAGTTTTCATACAGATTGTCTTCATGGCTAAATCATTTTGTTTTAGCTCTTGGATTAAATTATTTTTCCTGCATAACTGTTCatgtcaaaataaataaatgaatcatTGCAGTGTTAAATATGCAATGCTGGGCTTAAATGTGATTGCATAACACACCAACTTGAACCAGCTCTGATTCTTAATTGAGAGGAGCCCGAAAATGTCAAAAGTCAGTTTACATGCATCATTTTGGATGTGTAGTGTGTTTGATGTCTGACAAAATACTTTCTAAAAATGTAGTCATAAGTGGTATAAGTTTCTCTATGATTTTTGTATTCCTAATATAAAGTTAAATTTCTCAATCTTCTGTCTTATTAAATATAGTAGTGTTGTGGTTAAAA
>XM_021616132.2
AAGTCTAGGTGGGATTCAGCTTTTGTCAGATGTACGTaaatcattttttgttgttgcattttagCTAATCCTAACAATTTTCTAACTTTAACCAAATTCTCATAACCTTCGACATTTAATAGGCTACGTAATTTCTCATAAACCGGCTACGAAAAGTCAATTCTGACAAATGCTGGATCCCTTCTATCCATGACCACAAACAAGAGCTACGTTCACAACTCCCACACTCCCCAATGTTTTTTGACAGTATTTTGTAACACATTTCATGGAGAAGTATTCAAATATATGTTCACCTCTTTCCTAAATTGATTGTGTTGAGGCGAGTTATATTTTTCTAACGATCAGGGTGGAAGCATGGCTTCTCGTGGCAAATCAGAAACTGGGAAACTAAAACAAAACATGGAGGAGCAACTGGACAGATTGATGCAACAGCTCCAAGATTTGGAAGAGTGCAGAGAAGACCTAGAAGAGGAGGAGTATGAGGAGACCAAGAAGGAAACCCTGGAGCAGTTGAATGAGTTCAATGAGTCTCTGAAGAAGATGGTGACAGGCAACATGACACTGGTGGATGAGCTTGGAGGAATGCAACTGGCAATCCAGGCTGCCATCAGCCAAGCTTTCAAGACCCCCGAGGTGATCCGAATGTTTGCCAAGAAGCAACCGGGGCAGTTGAGAACCAGATTAGCAGAGATGGACCGTGATGTCATGGTGGGAAAACTTTCGAGGGATGTGTACACTCAGCAGAAGGTGGAGATCCTCACTGCCTTGAGAAAACTGGGCGAGAAGCTTACAGTCGAAGACGAGACTTTTCTGGCTGAAAATGTGACCGCAACTCTCAGCCAATTTGAAAAAATCACTGCAGACCTCGGATCAGAAGACAAGATAATGGCTTTAGCTAGTTCTGGTGTGGAGAAAACCAAGGTATAGAGGATAATCAGGTGTTGTCCAATGTCTATGTTGTTTAACATCAAGTGTTTCCACCCAATAACAGTGCCATAATATTGATAATGTAAATCAATCATGCACTTAGACCGTACTTGCTTTTAAAGAGTAAAGTTAACCTTttgtacactttttttttttctgaTGATGATTGTAAAACTTGGTATGCATTTGGTACTAGAGTAGTCTATTTATAATTTGAACAGTCCATCGGTCATCCTTTTTGTTAAGTGTGGCTCAGACATTTTGAAGGCTTTAAATTCAGTTTTCATACAGATTGTCTTCATGGCTAAATCATTTTGTTTTAGCTCTTGGATTAAATTATTTTTCCTGCATAACTGTTCatgtcaaaataaataaatgaatcatTGCAGTGTTAAATATGCAATGCTGGGCTTAAATGTGATTGCATAACACACCAACTTGAACCAGCTCTGATTCTTAATTGAGAGGAGCCCGAAAATGTCAAAAGTCAGTTTACATGCATCATTTTGGATGTGTAGTGTGTTTGATGTCTGACAAAATACTTTCTAAAAATGTAGTCATAAGTGGTATAAGTTTCTCTATGATTTTTGTATTCCTAATATAAAGTTAAATTTCTCAATCTTCTGTCTTATTAAATATAGTAGTGTTGTGGTTAAAA
>XM_021616131.2
ttttagCTAATCCTAACAATTTTCTAACTTTAACCAAATTCTCATAACCTTCGACATTTAATAGGCTACGTAATTTCTCATAAACCGGCTACGAAAAGTCAATTCTGACAAATGCTGGATCCCTTCTATCCATGACCACAAACAAGAGCTACGTTCACAACTCCCACACTCCCCAATGTTTTTTGACAGTATTTTGTAACACATTTCATGGAGAAGTATTCAAATATATGTTCACCTCTTTCCTAAATTGATTGTGTTGAGGCGAGTTATATTTTTCTAACGATCAGGTGAGGATTACTTATTTAATTTTTTCAAGCCAGCAGCTAGACAACTATAGCCACAGGCTAGACTACTACACGCACAAAAAAACTGTCTCAGTCAGATGAATCTGGCGGCCAGTGGGAACAAGGGTGGAAGCATGGCTTCTCGTGGCAAATCAGAAACTGGGAAACTAAAACAAAACATGGAGGAGCAACTGGACAGATTGATGCAACAGCTCCAAGATTTGGAAGAGTGCAGAGAAGACCTAGAAGAGGAGGAGTATGAGGAGACCAAGAAGGAAACCCTGGAGCAGTTGAATGAGTTCAATGAGTCTCTGAAGAAGATGGTGACAGGCAACATGACACTGGTGGATGAGCTTGGAGGAATGCAACTGGCAATCCAGGCTGCCATCAGCCAAGCTTTCAAGACCCCCGAGGTGATCCGAATGTTTGCCAAGAAGCAACCGGGGCAGTTGAGAACCAGATTAGCAGAGATGGACCGTGATGTCATGGTGGGAAAACTTTCGAGGGATGTGTACACTCAGCAGAAGGTGGAGATCCTCACTGCCTTGAGAAAACTGGGCGAGAAGCTTACAGTCGAAGACGAGACTTTTCTGGCTGAAAATGTGACCGCAACTCTCAGCCAATTTGAAAAAATCACTGCAGACCTCGGATCAGAAGACAAGATAATGGCTTTAGCTAGTTCTGGTGTGGAGAAAACCAAGGTATAGAGGATAATCAGGTGTTGTCCAATGTCTATGTTGTTTAACATCAAGTGTTTCCACCCAATAACAGTGCCATAATATTGATAATGTAAATCAATCATGCACTTAGACCGTACTTGCTTTTAAAGAGTAAAGTTAACCTTttgtacactttttttttttctgaTGATGATTGTAAAACTTGGTATGCATTTGGTACTAGAGTAGTCTATTTATAATTTGAACAGTCCATCGGTCATCCTTTTTGTTAAGTGTGGCTCAGACATTTTGAAGGCTTTAAATTCAGTTTTCATACAGATTGTCTTCATGGCTAAATCATTTTGTTTTAGCTCTTGGATTAAATTATTTTTCCTGCATAACTGTTCatgtcaaaataaataaatgaatcatTGCAGTGTTAAATATGCAATGCTGGGCTTAAATGTGATTGCATAACACACCAACTTGAACCAGCTCTGATTCTTAATTGAGAGGAGCCCGAAAATGTCAAAAGTCAGTTTACATGCATCATTTTGGATGTGTAGTGTGTTTGATGTCTGACAAAATACTTTCTAAAAATGTAGTCATAAGTGGTATAAGTTTCTCTATGATTTTTGTATTCCTAATATAAAGTTAAATTTCTCAATCTTCTGTCTTATTAAATATAGTAGTGTTGTGGTTAAAA

Function

symbol description
lzic Predicted to enable beta-catenin binding activity. Acts upstream of or within central nervous system development. Is expressed in brain; head; and notochord. Orthologous to human LZIC (leucine zipper and CTNNBIP1 domain containing).

NR:

description
protein LZIC isoform X1

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007417 central nervous system development biological_process
GO:0008013 beta-catenin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616133.2 False 1349 mRNA 0.39 7 51921146 51924442
XM_021616132.2 False 1585 mRNA 0.38 7 51921224 51924442
XM_021616131.2 True 1649 mRNA 0.39 7 51921282 51924442

Neighbor

gene id symbol gene type direction distance location
tardbpl tardbp coding upstream 210794 51705866 ~ 51710352 (+)
pex14 pex14 coding upstream 601764 51202733 ~ 51319382 (+)
masp2 masp2 coding upstream 739412 51173762 ~ 51181734 (+)
LOC110531197 NA coding upstream 793634 51125135 ~ 51127512 (+)
cort LOC106572313 coding upstream 813400 51106327 ~ 51107746 (+)
LOC110532337 LOC106572044 coding downstream 249568 52174010 ~ 52176441 (+)
LOC110532339 LOC107599000 coding downstream 257786 52182228 ~ 52189437 (+)
si:dkey-6n6.1 LOC106572038 coding downstream 282784 52207226 ~ 52216054 (+)
LOC110531199 LOC106572039 coding downstream 296395 52220837 ~ 52224935 (+)
dedd LOC106572035 coding downstream 305312 52229754 ~ 52234943 (+)
G816624 NA non-coding upstream 14500 51906325 ~ 51906646 (+)
G816602 NA non-coding upstream 53150 51867459 ~ 51867996 (+)
G816600 NA non-coding upstream 63858 51855605 ~ 51857288 (+)
G816522 NA non-coding upstream 172669 51748057 ~ 51748477 (+)
G816521 NA non-coding upstream 173443 51747480 ~ 51747703 (+)
G816646 clstn1 non-coding downstream 28403 51952845 ~ 51990544 (+)
G816663 NA non-coding downstream 43118 51967560 ~ 51979205 (+)
G816645 ctnnbip1 non-coding downstream 93501 52017943 ~ 52050502 (+)
G816733 NA non-coding downstream 190785 52115227 ~ 52115437 (+)
G816737 NA non-coding downstream 193794 52118236 ~ 52118440 (+)
G815767 casz1 other upstream 574652 51345372 ~ 51346494 (+)
G815610 NA other upstream 842204 51078447 ~ 51078942 (+)
G815428 NA other upstream 1120765 50796214 ~ 50800381 (+)
G813139 NA other upstream 2805528 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 2914436 48962187 ~ 49006710 (+)
LOC110532349 LOC106591969 other downstream 398829 52323001 ~ 52325924 (+)
LOC110532368 LOC106572016 other downstream 801979 52692676 ~ 52734929 (+)
G819897 NA other downstream 2802429 54726871 ~ 54727376 (+)
G820665 NA other downstream 3308816 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 3606595 55531033 ~ 55647541 (+)

Expression


Co-expression Network