Gene
RNA
| Item | Value |
|---|---|
| gene id | clstn1 |
| gene name | clstn1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 51925040 ~ 51990604 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| clstn1 | Predicted to enable calcium ion binding activity. Acts upstream of or within several processes, including axon arborization; establishment or maintenance of microtubule cytoskeleton polarity; and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in Golgi membrane; cell projection; and synapse. Predicted to be integral component of membrane. Predicted to be active in cell surface and postsynaptic membrane. Is expressed in several structures, including axis; musculature system; nervous system; neural tube; and tail bud. Orthologous to human CLSTN1 (calsyntenin 1). |
| description |
|---|
| calsyntenin-1 isoform X3 |
| id | name | namespace |
|---|---|---|
| GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| id | description |
|---|---|
| K22659 | CLSTN1; calsyntenin 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021616122.2 | False | 7142 | mRNA | 0.46 | 18 | 51925040 | 51990603 |
| XM_021616124.2 | False | 7091 | mRNA | 0.46 | 17 | 51925040 | 51990603 |
| XM_021616121.2 | False | 7173 | mRNA | 0.46 | 19 | 51925040 | 51990604 |
| XM_021616123.2 | True | 7122 | mRNA | 0.46 | 18 | 51925040 | 51990604 |
51,910,000
51,920,000
51,930,000
51,940,000
51,950,000
51,960,000
51,970,000
51,980,000
51,990,000
52,000,000
52,010,000
52,020,000
52,030,000
52,040,000
NC_048573.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110532330 | nmnat1 | coding | downstream | 3897 | 51910197 ~ 51921143 (-) |
| ube4b | ube4b | coding | downstream | 21266 | 51855709 ~ 51903774 (-) |
| kif1b | kif1b | coding | downstream | 70628 | 51748856 ~ 51854412 (-) |
| pgd | pgd | coding | downstream | 185140 | 51727055 ~ 51739900 (-) |
| sst6 | LOC106572312 | coding | downstream | 201593 | 51721832 ~ 51723447 (-) |
| ctnnbip1 | ctnnbip1 | coding | upstream | 27339 | 52017943 ~ 52050543 (-) |
| pik3cd | pik3cd | coding | upstream | 61464 | 52052068 ~ 52107848 (-) |
| tmem201 | tmem201 | coding | upstream | 128829 | 52119433 ~ 52148705 (-) |
| pfc | pfc | coding | upstream | 167609 | 52158213 ~ 52166905 (-) |
| tpk2 | LOC106572041 | coding | upstream | 198879 | 52189483 ~ 52194093 (-) |
| G817674 | LOC106566965 | non-coding | downstream | 214716 | 51707771 ~ 51710324 (-) |
| G817668 | NA | non-coding | downstream | 230346 | 51694434 ~ 51694694 (-) |
| G816295 | NA | non-coding | downstream | 591059 | 51333707 ~ 51333981 (-) |
| G816294 | NA | non-coding | downstream | 592484 | 51332274 ~ 51332556 (-) |
| G816293 | NA | non-coding | downstream | 593698 | 51331139 ~ 51331342 (-) |
| G817807 | NA | non-coding | upstream | 47196 | 52037800 ~ 52040827 (-) |
| G817830 | NA | non-coding | upstream | 118763 | 52109367 ~ 52109597 (-) |
| G817852 | NA | non-coding | upstream | 176853 | 52167457 ~ 52167858 (-) |
| G815045 | NA | other | downstream | 1705192 | 50218867 ~ 50219848 (-) |
| G815044 | NA | other | downstream | 1706343 | 50218356 ~ 50218697 (-) |
| G814157 | edem2 | other | downstream | 2188929 | 49735145 ~ 49736111 (-) |
| G814020 | NA | other | downstream | 2458278 | 49463957 ~ 49466762 (-) |
| G813357 | LOC106578276 | other | downstream | 3009336 | 48915435 ~ 48915704 (-) |
| G817848 | NA | other | upstream | 162678 | 52153282 ~ 52153642 (-) |
| LOC110532367 | LOC106572017 | other | upstream | 672849 | 52663417 ~ 52668762 (-) |
| G818117 | NA | other | upstream | 736563 | 52727167 ~ 52731623 (-) |
| LOC110531203 | NA | other | upstream | 2014943 | 54005547 ~ 54065096 (-) |
| cep104 | cep104 | other | upstream | 2294443 | 54247726 ~ 54294920 (-) |
