pfc (pfc)


Basic Information

Item Value
gene id pfc
gene name pfc
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52158213 ~ 52166905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001246322.2
AGAGTGGACAGAGAGCTTACAGTAAGAAGTACTAGGCATAGACAAAGACAGAGAAATGGTGCAGTTGTTGTGGACTTCATTAGTGTTGCTGATGACAATAAGGGAATCAGTATCACAGGAGGTGAACTGTTACAGCAGCTTTGATTCTGGAAATTGTGACGATCTCTGGCTACTGGGAGAAGTGACAATGGATGACTGTTGTCTTAACCCTCACTACGGATACATTGGAGCAGACAGAAAATGCAAGTCTTGTGGGCCACCTTCATGGTCTGAATGGACTGCTTGGGGCCGCTGCTCTGTCTCCTGTAAGGAGGGAGTTTCGCAGAGACGACGAGAATGCCAGGGACAGGGAAAATGTGCTCAGACGACTACCCATAAAGAGATTCAGAAACTCGCGTTAGAGACCAAAGTCTGCATTGATTCAAGCTGTTGTCCAGAACAAGGCCAATGGAGTAAGTGGGGTCAGTGGCAGCCCTGCTCAGTGACTTGTAATAAGGGCGTAAGAAACAGAGTGAGGACATGCACCGAACCCCAACCTAGATGTGGAGGCAGCTGTGACGGTCCAAGTGAAGAAAAGGAACCCTGCGTGGTTGATCTCATCTGTCCAACTCATGGTGGTTGGTCTAACTGGGATGGCTGGCAGCCATGCTCAGGCACTTGTGGGGGGGAGAATTTACCCAGACCTACACAGCGGCGCAACAGATCATGCAACAACCCACCACCGTCCTCAGTGCCCCCTGGTGACGAATGCCCTGGGTTAGGGAGCAACACTAGGACCTGTGATGAGCTTCCTTTCTGTCCTGTGAATGGTAACTGGGGGCTGTGGGGGCCCCCCAGCTCCTGCTCCGTTACCTGTGGGGTGGGGATTCATGAAATGCTCAGACAGTGTAACAACCCAGCCCCTAAACATGGAGGTCTGCCCTGCTTTGGATCCAATAAAGACCAAAAAATCTGCAATACCAAAAACCATTGCCCAGTGGATGGTCAGTGGTCGCAGTGGGGGAGATGGGAAGAATGTAAATCTAATAGAGGAAAAATTAGGTGTCGAAAAATTGGTGGACAGCAAAGACGGCAAAGATGGTGTGAACACGCAGGTTTTGATGGGAAGACGTGTGAAGGAAAGATTACAGACTACAGGGCCTGCTATGACATTAACTCATGTCACTTTGATGGTAAGTGGAGTGAATGGAGTGAGTGGAGTCAGTGTGATCCCCCCTGTGGAGAAGGAGCCAAAAGGACCAGAGAACAAAAGTGCATACCTGATCTGTCTGCATATGATGAGACAGTAGGGTTTCATGTTAAGGTTAAAGCCTACTTTGATGGGAAACCATTTGCGAACTGTACACTGTTGAAGGACCCAAAACAAAGTCTGGCCTGTATGAATGTTCCTCCATGTGACACATAGAGTTTTTCCTGAATCTTTTGACTGCTTTGAGGAGGACTTAAGACAACTcaatgttcaacaaccatcaAACCACAAGTCTGGAGGGGAATACACATTGTCAATTTCTAGCAATGTGATTTCACTGCCTTTGGTCATGTGTCTGTGCAGCCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K15412 CFP; complement factor properdin

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001246322.2 True 1555 mRNA 0.48 10 52158213 52166905
Loading

Neighbor

gene id symbol gene type direction distance location
tmem201 tmem201 coding downstream 9508 52119433 ~ 52148705 (-)
pik3cd pik3cd coding downstream 50365 52052068 ~ 52107848 (-)
ctnnbip1 ctnnbip1 coding downstream 107670 52017943 ~ 52050543 (-)
clstn1 clstn1 coding downstream 167609 51925040 ~ 51990604 (-)
LOC110532330 nmnat1 coding downstream 237070 51910197 ~ 51921143 (-)
tpk2 LOC106572041 coding upstream 22578 52189483 ~ 52194093 (-)
LOC110531198 LOC107390564 coding upstream 28518 52195423 ~ 52200315 (-)
LOC110532341 NA coding upstream 68790 52235695 ~ 52246610 (-)
LOC101268902 nr1h4 coding upstream 128279 52295184 ~ 52310423 (-)
slc66a1 pqlc2 coding upstream 151208 52318113 ~ 52322900 (-)
G817830 NA non-coding downstream 48616 52109367 ~ 52109597 (-)
G817807 NA non-coding downstream 117386 52037800 ~ 52040827 (-)
G817674 LOC106566965 non-coding downstream 447889 51707771 ~ 51710324 (-)
G817852 NA non-coding upstream 552 52167457 ~ 52167858 (-)
G817875 LOC106572038 non-coding upstream 47560 52214465 ~ 52216216 (-)
G817920 LOC106566841 non-coding upstream 108118 52275023 ~ 52277052 (-)
G817924 NA non-coding upstream 115955 52282860 ~ 52283557 (-)
G817906 NA non-coding upstream 118713 52285618 ~ 52317552 (-)
G817848 NA other downstream 4571 52153282 ~ 52153642 (-)
G815045 NA other downstream 1938365 50218867 ~ 50219848 (-)
G815044 NA other downstream 1939516 50218356 ~ 50218697 (-)
G814157 edem2 other downstream 2422102 49735145 ~ 49736111 (-)
G814020 NA other downstream 2691451 49463957 ~ 49466762 (-)
LOC110532367 LOC106572017 other upstream 496548 52663417 ~ 52668762 (-)
G818117 NA other upstream 560262 52727167 ~ 52731623 (-)
LOC110531203 NA other upstream 1838642 54005547 ~ 54065096 (-)
cep104 cep104 other upstream 2118142 54247726 ~ 54294920 (-)
G820398 NA other upstream 2587343 54754248 ~ 54754641 (-)

Expression

pfc(pfc) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 400.
End of interactive chart.

pfc(pfc) Expression in each Bioproject

Bar chart with 20 bars.
pfc(pfc) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15000.
End of interactive chart.

Co-expression Network