LOC110532337 (LOC106572044)


Basic Information

Item Value
gene id LOC110532337
gene name LOC106572044
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52174010 ~ 52176441 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616142.1
CCCTATCTTGGAATTCTCTGCTGCTGTCTCGCAACTTGAAGAAGAAAATGCGAAACAATTCCGGTTCCGGAGACTCGAAGTGTTGACCTGACAAAATGCTCGCCCGGTTGTCAAGGTTTGGGCCTGCCTTGCCCCGTTTTCGCCCTTATCTTGTGTGCGGGACTCGGTTCGTATCTCAATCGCCACCCTCGGGTGCTGCTGGTTCGGCCACAGTGTCGGATTTGCAGCCTTCACATGCCAAGGAAAGTCATGGACACGCAGAGGTCAGCGCGTTCGAAAAGAATCGAGATTATCATGGGTTCTCTCAGGACCCTGTCGTTGACGAGTGGAACATGAGGATGGCCTTCTTCTTTGGCATCTCTATGGCTATTGTGGTTGGGGGTACCTTCATCCACTATTTGCCAGACCATGGTATGAGGCAGTGGGCCAGGAGGGAAGCAGAAAGGTTGATTACACAGAGGGAGGCTGCAGGCCTTCCTCTTATGGAGGAGAACTACTATGACCCAAGCAAGATTGTGCTACCAGGAGCCGGAGAAGAGTAGGATGTACTATAAGGAGATGCACATTGATCATTTGTTTATTTCTCTGACTGTAAATTTCTCTtcagtatgttattaaacatacactactctactaca

Function

NR:

description
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial-like

GO: NA

KEGG:

id description
K11351 NDUFB11; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616142.1 True 638 mRNA 0.49 3 52174010 52176441

Neighbor

gene id symbol gene type direction distance location
lzic lzic coding upstream 249568 51921146 ~ 51924442 (+)
tardbpl tardbp coding upstream 463658 51705866 ~ 51710352 (+)
pex14 pex14 coding upstream 854628 51202733 ~ 51319382 (+)
masp2 masp2 coding upstream 992276 51173762 ~ 51181734 (+)
LOC110531197 NA coding upstream 1046498 51125135 ~ 51127512 (+)
LOC110532339 LOC107599000 coding downstream 5787 52182228 ~ 52189437 (+)
si:dkey-6n6.1 LOC106572038 coding downstream 30785 52207226 ~ 52216054 (+)
LOC110531199 LOC106572039 coding downstream 44396 52220837 ~ 52224935 (+)
dedd LOC106572035 coding downstream 53313 52229754 ~ 52234943 (+)
LOC110531200 LOC106572034 coding downstream 69931 52246372 ~ 52250891 (+)
G816778 NA non-coding upstream 1290 52172479 ~ 52172720 (+)
G816729 NA non-coding upstream 14183 52158839 ~ 52159827 (+)
G816765 NA non-coding upstream 16667 52157128 ~ 52157343 (+)
G816759 NA non-coding upstream 24081 52149729 ~ 52149929 (+)
G816758 NA non-coding upstream 24398 52149238 ~ 52149612 (+)
G816781 NA non-coding downstream 97 52176538 ~ 52176741 (+)
G816788 NA non-coding downstream 22522 52198963 ~ 52199354 (+)
LOC118966072 LOC106572034 non-coding downstream 28403 52204844 ~ 52253412 (+)
G816872 NA non-coding downstream 188199 52364640 ~ 52366398 (+)
G815767 casz1 other upstream 827516 51345372 ~ 51346494 (+)
G815610 NA other upstream 1095068 51078447 ~ 51078942 (+)
G815428 NA other upstream 1373629 50796214 ~ 50800381 (+)
G813139 NA other upstream 3058392 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 3167300 48962187 ~ 49006710 (+)
LOC110532349 LOC106591969 other downstream 146830 52323001 ~ 52325924 (+)
LOC110532368 LOC106572016 other downstream 549980 52692676 ~ 52734929 (+)
G819897 NA other downstream 2550430 54726871 ~ 54727376 (+)
G820665 NA other downstream 3056817 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 3354596 55531033 ~ 55647541 (+)

Expression


Co-expression Network