LOC110532339 (LOC107599000)


Basic Information

Item Value
gene id LOC110532339
gene name LOC107599000
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52182228 ~ 52189437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616144.2
AGTTGACTTAAATATCTGTCACTCATTCATTTGAGGCGTCCTATTGGCGCGAGATCATGGGCATAGGCGGATGTTATCGGCGTGGCACACTGTCGGGGGCGGGGTTGAAGGGTCGGACAGGAAAAGAAAAAGGCGAGGACATCTGCAACGAAAACGATGGCTGCGATCCGTAAGAAACTGGTGATTGTTGGTGATGGTGCTTGTGGAAAGACCTGTCTGCTcatagtcttcagtaaagaccaGTTCCCTGAGGTCTACGTACCTACAGTGTTTGAGAACTATGTGGCAGATATTGAGGTGGACAGTAAGCAGGTGGAACTGGCCCTCTGGGACACAGCTGGACAGGAGGACTACGACAGACTACGGCCTCTCTCTTACCCTGACACTGACGTCATCCTCATGTGCTTTTCCATAGATAGCCCCGACAGCTTGGAGAATATCCCAGAGAAGTGGACCCCTGAAGTAAAACACTTCTGTCCAAATGTACCCATTATTCTTGTGGGTAATAAGAAGGACCTGCGGAATGACGAACACACGCGTCGGGAGCTAGCAAAAATGAAGCAGGAACCAGTGAAGCCAGAAGAGGCCCGGGACATGGCAAACCGCATCAACGCGTTTGGCTACTTGGAGTGCTCAGCCAAGACGAAAGACGGCGTGAGGGAGGTGTTTGAGATGGCCACCAGGGCCGCGCTGCAGGCCAAGAAACGTGGAAAGAAGAATGCCTGCCTCCTGCTATagagagctggagaaagacgGGAGCGGGTAGGAAGGGGGAAACAAATTGGGCAGAGGAAAACGCTGCACCCCTCTTCTAAGTCTGCCTCTGGAAGGGTGGGTGAGTTTCAAGGGGGGTGTGAGGGAGAAAAACACAATTAAACTAGGCCAAAGGAAATGGAGACGGTGAAGGTCAAATGTAACGAGAAAGGGAGTTTACATTGAAGGCCAAGTTGATTGccaattgttttttaaaataagaTAATCGTAAGGTTAAGATTTTTTAAATTGGGTCTTGGACAAGTAGAAGGGTAAAGaaaaaacatctctctggtaaacTTGTCAGGGTGGTGTACTCTGAGGGACGGGATAAAATTGGTGTTCATGATAGGTTGTTCACCACAGCGCTATTGCCCTGGTTCATAGAGCTGAGCATCGTCAGAGAAAAAGGGGGTTTCGTTGCATCATGGTGCATGTTCTCCCAACTCTGACCTCCCTGGCTTGCAGTGTCTGTCTGCGCTTGTCTTTAATTTCTGTCCAGCCATACCATAGGTGTTTATTTTCTTTGTTCTCCCAATGGATAGACTAACCCTATATTTGCACGGACCAGCATCTCCTTCTATGGTATCATAATCTTGCATGGACCAGCACCTCTTATGATATAATTGGTCCAATAGTATAGTTAATTTGATACAAGCAATTTTGATTTTAAATGGCTACATATTTTTATTTGCCTTTTGACTATAAAATTTATATTAAAATGCATACAATAATATTGATACTAACTGATTTTTGTACGCCTGTTCATGTATTATAATGAAAAATAATTTGGTTTTATCATTAGTTGGCCTCAAGTCATATAAATAATCTACATTTGATGCGGACTGTCAAACACTGTTTGgtttgaaaggggggggggggttgactttTTATTAAGTGATAAAGGTTTTGCAAATTTGGTATTTTCCTCTTGCAGATTGTTTTTGCCTGCATGCCAGGCTATTATTGGGAGTGGGTTTTGAGTGGGTTTTTAATGTGACCTATTGCTCACTGCCTCCAGTCCGTCTTTCTAAAACTGTATGTCTTCCTGTTTTTCCcctcttgtactgtatgtttaacCTTGTGAGAGTCTACTGGCTTATCCTGTATCAGTTGTGCATATTTTGCAAAAATTAGTAACTTTAGGATGAGTTTAAAAAATAACATGTAAAATGCTTAGTAATCCATGAAAAAGATTGACAATATGTCATACTATTAAACGCAAGTAATTTCTTTAAATAATATCTTAGTCATTTGTGTGGGAGGTCTTTTGTATACAAATGCATCCTCACATTTCCGCAGTCCTCTTTTTAAAAGTACTCTTAAGAAAATAAATTGTTATAGGGAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04513 RHOA; Ras homolog gene family, member A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616144.2 True 2101 mRNA 0.43 5 52182228 52189437

Neighbor

gene id symbol gene type direction distance location
LOC110532337 LOC106572044 coding upstream 5787 52174010 ~ 52176441 (+)
lzic lzic coding upstream 257786 51921146 ~ 51924442 (+)
tardbpl tardbp coding upstream 471876 51705866 ~ 51710352 (+)
pex14 pex14 coding upstream 862846 51202733 ~ 51319382 (+)
masp2 masp2 coding upstream 1000494 51173762 ~ 51181734 (+)
si:dkey-6n6.1 LOC106572038 coding downstream 17789 52207226 ~ 52216054 (+)
LOC110531199 LOC106572039 coding downstream 31400 52220837 ~ 52224935 (+)
dedd LOC106572035 coding downstream 40317 52229754 ~ 52234943 (+)
LOC110531200 LOC106572034 coding downstream 56935 52246372 ~ 52250891 (+)
LOC118966072 LOC106572034 coding downstream 61680 52204844 ~ 52253412 (+)
G816781 NA non-coding upstream 5487 52176538 ~ 52176741 (+)
G816778 NA non-coding upstream 9508 52172479 ~ 52172720 (+)
G816729 NA non-coding upstream 22401 52158839 ~ 52159827 (+)
G816765 NA non-coding upstream 24885 52157128 ~ 52157343 (+)
G816759 NA non-coding upstream 32299 52149729 ~ 52149929 (+)
G816788 NA non-coding downstream 9526 52198963 ~ 52199354 (+)
G816872 NA non-coding downstream 175203 52364640 ~ 52366398 (+)
G816873 bcas2 non-coding downstream 177516 52366953 ~ 52371758 (+)
G815767 casz1 other upstream 835734 51345372 ~ 51346494 (+)
G815610 NA other upstream 1103286 51078447 ~ 51078942 (+)
G815428 NA other upstream 1381847 50796214 ~ 50800381 (+)
G813139 NA other upstream 3066610 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 3175518 48962187 ~ 49006710 (+)
LOC110532349 LOC106591969 other downstream 133834 52323001 ~ 52325924 (+)
LOC110532368 LOC106572016 other downstream 536984 52692676 ~ 52734929 (+)
G819897 NA other downstream 2537434 54726871 ~ 54727376 (+)
G820665 NA other downstream 3043821 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 3341600 55531033 ~ 55647541 (+)

Expression


Co-expression Network