XLOC_026728 (elavl3)


Basic Information

Item Value
gene id XLOC_026728
gene name elavl3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 46800190 ~ 46818001 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052041
CGGTGATCTCTCCTGAAGGGGATAATGGGAGAGCAGCGCTTTGCAATGGCTGCCATGTAGTACCCTCCCTGCACAATTAGCCAATCAGCAGCAAGCTCTGCCAGCCAGAAGGACACATAAAAGAAGAACATTGCAGCAGAGGCACAGAAGGAGCCTGCGAGGAGCTGGGaaatacacacacaacagcagaACCACAACACCCTCCCCTGGACACACCCTACTGGGGATcactgcttttctttttttctgaaccATCGCCCACGCCACACGGAGAGAAATCTCTCTCTCATCATCATCCTGAAGAAAACCCCCTTATCCTCATTTTCACACTGCTGAGGAAAACCTACAATCGCACGGGCTGAGATTTCCTGGCGAAGACTGtcctttttcctttttctttttttttcttttcctttggaAACTGACATTTGCATTTCTCCATTCCAAGCCACGGCGTAATAATATCTGCAATCCAGCCTGAAGACCTGCAAATCGAAGGACCTAGATCACTATCATCTTTGTACGTCAAGAATGGTTACTATAATTAGCACCATGGAAACTCAGGTGTCCAATGGTCCGAGCGGAACCAGCCTGCCTAACGGCCCTGTCATTAGCACTAACGGCGCCACAGATGACAGCAAAACTAACCTGATCGTCAACTACCTGCCTCAGAACATGACCCAGGAAGAGTTCAAGAGCCTCTTTGGCAGCATCGGGGAAATCGAGTCCTGCAAATTGGTCAGAGACAAGATCACAGGCCAGAGCTTGGGATATGGCTTTGTAAACTATGTGGATCCCAACGACGCCGACAAGGCTATCAACACGCTCAACGGTCTCAAACTGCAGACCAAAACAATCAAGGTGTCTTACGCCAGGCCCAGCTCAGCTTCCATCCGCGATGCCAACCTGTATGTGAGCGGCCTGCCCAAAACCATGAGTCAGAAAGACATGGAGCAGTTGTTTTCCCAGTATGGAAGGATCATCACCTCACGCATCCTGGTAGACCAGGTCACAGGTATATCGCGCGGGGTAGGTTTCATTCGGTTCGACAAACGGAACGAAGCAGAGGAGGCCATCAAGGGCCTGAACGGTCAGAAGCCACTAGGAGCAGCTGAGCCCATCACCGTAAAGTTCGCCAACAACCCCAGTCAGAAGACAGGACAGGCTCTGCTGACCCAGCTCTACCAGACAGCCGCTCGCCGCTACACTGGCCCTCTGCACCACCAGACCCAGCGCTTCAGACTCGACAATTTACTAAACGCCAGCTACGGAGTCAAGAgATTCTCCCCCATAACCATTGACAGCATGACTAGTCTTGCCGGGGTCAACCTGACCGGGCCCACTGGAGCCGGCTGGTGCATCTTCGTCTACAACCTGTCCCCGGAAGCTGACGAAAGTGTCCTGTGGCAGCTCTTCGGGCCTTTTGGCGCCGTCACAAACGTCAAGGTCATCCGTGACTTCACCACCAACAAATGTAAGGGCTTTGGCTTCGTCACCATGACCAACTACGACGAGGCAGCCATGGCTATCGCCAGTCTGAATGGCTACCGCCTGGGCGACCGCGTGCTGCAGGTCTCGTTCAAGACCAGCAAGCAGCACAAGGCTTGAAGGAAGGCCTAGTCACTATTGCTCTTTAACATGCAGGGGGAGCTACTGAGCTCCCTGTACATTCACTCTACATGGGCCTGGACTGAGTCTCTCTCTAACATACattcgacacacacacacacacacacacacacacacacacatttagttgTTTTGAACAAAAATACACAAGTAGAGTcgttttttcttttctctctacACAACATGCTAGTCCTTCCCACAGTTTGCCTGTATTGAATTAGCAGAAGTGTGAGGCGGGAATGGGGAAATCCAAAAGGAGGGACAGTCTAATGAATGTGACGGAGAATGTCTGCagagatttaatttaattcaggcaaaGTACGAGAACTGGTCaacgaaaaagaaaaaagttaaatcaaATATGTGCAATTTATCCCGAAATCTTGCCCCAGTAACTCTCCTGTCTGGCTCCAGAGGATGTAGTCACTTTTTTACACTTGGGCATTTTGAATCAGTGATTTTTTTTAGAgacaaatgattaaaaacagtgttctcttatatatatatattatataactatatattcAACATTTAAGGTGGTTATAATAGCCAAATATGTACGCATTTTTCTAGAACTTTGATTACGGATTCCTGGCTCTAAATTAGGTTGCAACCTTGCCTTAcggcgccacacacacacacaccttacttGAAGTCCAACCTAACAAACCATGCAAATGGTAGTCACAAAATTGAGAGGTTACCAGGGGGTCATCACAATCACCTCAGCACACTGAAAGACAAATTTCAACACAGAGACACTcacgcacgcatgcatgcacatACGCAAACACGTACCTCCAGTGGAGGGCAAAACATGGCGACCTAGAATCTTCTTGTATCTTTCCACTCTGAGTTTTAGAGGTAGAATTTAGAATCGATTCCACCACATGCAGTTATCTGTGTAACTAGGGGCAGTTTACCCATTGCGAAGGAATGCATTTGGAATTCTTCTGAAAGTCTTTCAAACCAATTATGAAGGCCAACCATAATCTCCAGGGCTTCTTCTAAACAGGTTTAAATGGCCTGTGAGTGGGAAATGCTGTGTGTCAGCTCTTTGAGATGTTCGCGTTAAAGAGAGTGAGTGCTTTATGGAGGTCAGGGGCCTCTTGGATTTGTCACCCTTGCTCTTCATAACCTCCAGAATTGCGTTGTAATTCGCTTTTCCCAAATCGGTTTTAGCAGCCCCTGCATATCTAAACAGCTACATATCGAGTCCTTTAAGTCCTCAAGGCCCTTCCAAGCAAGTCGCAGCCAATTGAGCTACAAATGATTCCTTTTTGTTATGTCATAAATGAAATATTCCCTAGATATAGTAACGACAATGCCCAAGCCATCCACAGCCCTGTGATTAAAACTAAACTGTTACATGGGGAGAGACATTGCTGTAAAATCGCAAACCTTCACGTTATATGAAGAAAAGAAATGAGAGATGTAAATGTGTGTTCAAATCAAGTGACATTTTGCTTTTCTAAATAACGCTGTGTTAGCCAAAGAGGACAATGATCTCTTTGAAAAGGATTACATTAgagattaatatatttttatatctacgagaaaaaaaaaacaagaccttGTGCAACATTTTTACAGATTCTTAAATTGTGGAAATCTTTGGACACACCGCATGGCTTTTATTTTCAGAGTTTTCAACTTTGGGGAGAGAGGGCCAGTCTGCGGTGGTAGGGAGGGGATAGGAGGGTTGGGGACTAAGACTTACATGCAGTGAAACcatttcattttcaaaaaaaaaaaaaaaaaaaaaagagaaacatacGAAACGTTCAAAAAAGGATCAGCAGACGGATACATGTACGCATTACGCaggaacaacaaaaaaagtagATAAGACGGTTTCTCTAAAGTGAAAAATCAAGCGTTGCTTCAATGACGGTGCAGTGAAGCTCTTAATGGCGAAACACCCAGAGCATTTCACCTCACATCGGCCAAAAGATGAATCACCTTAACGCTTCAGCATGTTCAGTGCACCAAAAACGTTGAATAATTGACATAATACTATGTAGCTGCACTtataaatgtaatcaaaaatCCATAGTGAATTTTATTCGCCAGTATGTCATCAAACAAGGCAATTGTCTATCAttctactgttttgttttttttttgtttaatttacgcTCCACATATCTTATGTATTCCACGCTCATATCATTGACACCTGATTTTGCTCCTTTGCACAAGCACTAACCAACCAAGGAATCTTAGCTTTGTCACTGatgaaacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatcaaagcAAAGTGTCTCTAAGCCCTCCATTCTCATGATCGTATCAAAACTGTGACCTAACCCCTCTCAGCTTACGCCACATTACCTTTTCTTTCACTAACTCAACTCATTCTGGAATTCATCAGTGGTGTGCCCTAGAGGGGACGAGAATCATAAACATACAGATAAAATGGTTGACGGCATGGATAAAAGTTACCAGGGCAAACTAGTAGTGCGCCTGGCGACTGAATAGAAATCTTTAGCTACACCACTTCCCTCATTCCCTCAGAGAGCCAAGGACAATGCCAGGAAACAAACATACTGCACCGCTTGAGCAActacaataataatcattaaaagaaaaagacaaaaaacttTCCTATGGAACAGTAAGTGCAATGTGCTTCGTTTTTATATTGACTGAGAacaaaagatatatatattttttaaaaaagaaattaaacatcATACTGAAATGGTTTGCAGAATAGTGAAAGGATCAAACGTAATGAACAATGACAAAATGGcaaaaaacgacaaaaaaaaaaaaa
>TCONS_00052042
GCTGGGaaatacacacacaacagcagaACCACAACACCCTCCCCTGGACACACCCTACTGGGGATcactgcttttctttttttctgaaccATCGCCCACGCCACACGGAGAGAAATCTCTCTCTCATCATCATCCTGAAGAAAACCCCCTTATCCTCATTTTCACACTGCTGAGGAAAACCTACAATCGCACGGGCTGAGATTTCCTGGCGAAGACTGtcctttttcctttttctttttttttcttttcctttggaAACTGACATTTGCATTTCTCCATTCCAAGCCACGGCGTAATAATATCTGCAATCCAGCCTGAAGACCTGCAAATCGAAGGACCTAGATCACTATCATCTTTGTACGTCAAGAATGGTTACTATAATTAGCACCATGGAAACTCAGGTGTCCAATGGTCCGAGCGGAACCAGCCTGCCTAACGGCCCTGTCATTAGCACTAACGGCGCCACAGATGACAGCAAAACTAACCTGATCGTCAACTACCTGCCTCAGAACATGACCCAGGAAGAGTTCAAGAGCCTCTTTGGCAGCATCGGGGAAATCGAGTCCTGCAAATTGGTCAGAGACAAGATCACAGGCCAGAGCTTGGGATATGGCTTTGTAAACTATGTGGATCCCAACGACGCCGACAAGGCTATCAACACGCTCAACGGTCTCAAACTGCAGACCAAAACAATCAAGGTGTCTTACGCCAGGCCCAGCTCAGCTTCCATCCGCGATGCCAACCTGTATGTGAGCGGCCTGCCCAAAACCATGAGTCAGAAAGACATGGAGCAGTTGTTTTCCCAGTATGGAAGGATCATCACCTCACGCATCCTGGTAGACCAGGTCACAGCAGGTATATCGCGCGGGGTAGGTTTCATTCGGTTCGACAAACGGAACGAAGCAGAGGAGGCCATCAAGGGCCTGAACGGTCAGAAGCCACTAGGAGCAGCTGAGCCCATCACCGTAAAGTTCGCCAACAACCCCAGTCAGAAGACAGGACAGGCTCTGCTGACCCAGCTCTACCAGACAGCCGCTCGCCGCTACACTGGCCCTCTGCACCACCAGACCCAGCGCTTCAGACTCGACAATTTACTAAACGCCAGCTACGGAGTCAAGAgATTCTCCCCCATAACCATTGACAGCATGACTAGTCTTGCCGGGGTCAACCTGACCGGGCCCACTGGAGCCGGCTGGTGCATCTTCGTCTACAACCTGTCCCCGGAAGCTGACGAAAGTGTCCTGTGGCAGCTCTTCGGGCCTTTTGGCGCCGTCACAAACGTCAAGGTCATCCGTGACTTCACCACCAACAAATGTAAGGGCTTTGGCTTCGTCACCATGACCAACTACGACGAGGCAGCCATGGCTATCGCCAGTCTGAATGGCTACCGCCTGGGCGACCGCGTGCTGCAGGTCTCGTTCAAGACCAGCAAGCAGCACAAGGCTTGAAGGAAGGCCTAGTCACTATTGCTCTTTAACATGCAGGGGGAGCTACTGAGCTCCCTGTACATTCACTCTACATGGGCCTGGACTGAGTCTCTCTCTAACATACattcgacacacacacacacacacacacacacacacacacatttagttgTTTTGAACAAAAATACACAAGTAGAGTcgttttttcttttctctctacACAACATGCTAGTCCTTCCCACAGTTTGCCTGTATTGAATTAGCAGAAGTGTGAGGCGGGAATGGGGAAATCCAAAAGGAGGGACAGTCTAATGAATGTGACGGAGAATGTCTGCagagatttaatttaattcaggcaaaGTACGAGAACTGGTCaacgaaaaagaaaaaagttaaatcaaATATGTGCAATTTATCCCGAAATCTTGCCCCAGTAACTCTCCTGTCTGGCTCCAGAGGATGTAGTCACTTTTTTACACTTGGGCATTTTGAATCAGTGATTTTTTTTAGAgacaaatgattaaaaacagtgttctcttatatatatatattatataactatatattcAACATTTAAGGTGGTTATAATAGCCAAATATGTACGCATTTTTCTAGAACTTTGATTACGGATTCCTGGCTCTAAATTAGGTTGCAACCTTGCCTTAcggcgccacacacacacacaccttacttGAAGTCCAACCTAACAAACCATGCAAATGGTAGTCACAAAATTGAGAGGTTACCAGGGGGTCATCACAATCACCTCAGCACACTGAAAGACAAATTTCAACACAGAGACACTcacgcacgcatgcatgcacatACGCAAACACGTACCTCCAGTGGAGGGCAAAACATGGCGACCTAGAATCTTCTTGTATCTTTCCACTCTGAGTTTTAGAGGTAGAATTTAGAATCGATTCCACCACATGCAGTTATCTGTGTAACTAGGGGCAGTTTACCCATTGCGAAGGAATGCATTTGGAATTCTTCTGAAAGTCTTTCAAACCAATTATGAAGGCCAACCATAATCTCCAGGGCTTCTTCTAAACAGGTTTAAATGGCCTGTGAGTGGGAAATGCTGTGTGTCAGCTCTTTGAGATGTTCGCGTTAAAGAGAGTGAGTGCTTTATGGAGGTCAGGGGCCTCTTGGATTTGTCACCCTTGCTCTTCATAACCTCCAGAATTGCGTTGTAATTCGCTTTTCCCAAATCGGTTTTAGCAGCCCCTGCATATCTAAACAGCTACATATCGAGTCCTTTAAGTCCTCAAGGCCCTTCCAAGCAAGTCGCAGCCAATTGAGCTACAAATGATTCCTTTTTGTTATGTCATAAATGAAATATTCCCTAGATATAGTAACGACAATGCCCAAGCCATCCACAGCCCTGTGATTAAAACTAAACTGTTACATGGGGAGAGACATTGCTGTAAAATCGCAAACCTTCACGTTATATGAAGAAAAGAAATGAGAGATGTAAATGTGTGTTCAAATCAAGTGACATTTTGCTTTTCTAAATAACGCTGTGTTAGCCAAAGAGGACAATGATCTCTTTGAAAAGGATTACATTAgagattaatatatttttatatctacgagaaaaaaaaaacaagaccttGTGCAACATTTTTACAGATTCTTAAATTGTGGAAATCTTTGGACACACCGCATGGCTTTTATTTTCAGAGTTTTCAACTTTGGGGAGAGAGGGCCAGTCTGCGGTGGTAGGGAGGGGATAGGAGGGTTGGGGACTAAGACTTACATGCAGTGAAACcatttcattttcaaaaaaaaaaaaaa
>TCONS_00052043
TAGATCACTATCATCTTTGTACGTCAAGAATGGTTACTATAATTAGCACCATGGAAACTCAGGTGTCCAATGGTCCGAGCGGAACCAGCCTGCCTAACGGCCCTGTCATTAGCACTAACGGCGCCACAGATGACAGCAAAACTAACCTGATCGTCAACTACCTGCCTCAGAACATGACCCAGGAAGAGTTCAAGAGCCTCTTTGGCAGCATCGGGGAAATCGAGTCCTGCAAATTGGTCAGAGACAAGATCACAGGCCAGAGCTTGGGATATGGCTTTGTAAACTATGTGGATCCCAACGACGCCGACAAGGCTATCAACACGCTCAACGGTCTCAAACTGCAGACCAAAACAATCAAGGTGTCTTACGCCAGGCCCAGCTCAGCTTCCATCCGCGATGCCAACCTGTATGTGAGCGGCCTGCCCAAAACCATGAGTCAGAAAGACATGGAGCAGTTGTTTTCCCAGTATGGAAGGATCATCACCTCACGCATCCTGGTAGACCAGGTCACAGGTATATCGCGCGGGGTAGGTTTCATTCGGTTCGACAAACGGAACGAAGCAGAGGAGGCCATCAAGGGCCTGAACGGTCAGAAGCCACTAGGAGCAGCTGAGCCCATCACCGTAAAGTTCGCCAACAACCCCAGTCAGAAGACAGGACAGGCTCTGCTGACCCAGCTCTACCAGACAGCCGCTCGCCGCTACACTGGCCCTCTGCACCACCAGACCCAGCGCTTCAGATTCTCCCCCATAACCATTGACAGCATGACTAGTCTTGCCGGGGTCAACCTGACCGGGCCCACTGGAGCCGGCTGGTGCATCTTCGTCTACAACCTGTCCCCGGAAGCTGACGAAAGTGTCCTGTGGCAGCTCTTCGGGCCTTTTGGCGCCGTCACAAACGTCAAGGTCATCCGTGACTTCACCACCAACAAATGTAAGGGCTTTGGCTTCGTCACCATGACCAACTACGACGAGGCAGCCATGGCTATCGCCAGTCTGAATGGCTACCGCCTGGGCGACCGCGTGCTGCAGGTCTCGTTCAAGACCAGCAAGCAGCACAAGGCTTGAAGGAAGGCCTAGTCACTATTGCTCTTTAACATGCAGGGGGAGCTACTGAGCTC
>TCONS_00052044
GTTTTCGCAGGCCAGAGCTTGGGATATGGCTTTGTAAACTATGTGGATCCCAACGACGCCGACAAGGCTATCAACACGCTCAACGGTCTCAAACTGCAGACCAAAACAATCAAGGTGTCTTACGCCAGGCCCAGCTCAGCTTCCATCCGCGATGCCAACCTGTATGTGAGCGGCCTGCCCAAAACCATGAGTCAGAAAGACATGGAGCAGTTGTTTTCCCAGTATGGAAGGATCATCACCTCACGCATCCTGGTAGACCAGGTCACAGGTATATCGCGCGGGGTAGGTTTCATTCGGTTCGACAAACGGAACGAAGCAGAGGAGGCCATCAAGGGCCTGAACGGTCAGAAGCCACTAGGAGCAGCTGAGCCCATCACCGTAAAGTTCGCCAACAACCCCAGTCAGAAGACAGGACAGGCTCTGCTGACCCAGCTCTACCAGACAGCCGCTCGCCGCTACACTGGCCCTCTGCACCACCAGACCCAGCGCTTCAGATTCTCCCCCATAACCATTGACAGCATGACTAGTCT
>TCONS_00052045
AGAAGGAGCCTGCGAGGAGCTGGGaaatacacacacaacagcagaACCACAACACCCTCCCCTGGACACACCCTACTGGGGATcactgcttttctttttttctgaaccATCGCCCACGCCACACGGAGAGAAATCTCTCTCTCATCATCATCCTGAAGAAAACCCCCTTATCCTCATTTTCACACTGCTGAGGAAAACCTACAATCGCACGGGCTGAGATTTCCTGGCGAAGACTGtcctttttcctttttctttttttttcttttcctttggaAACTGACATTTGCATTTCTCCATTCCAAGCCACGGCGTAATAATATCTGCAATCCAGCCTGAAGACCTGCAAATCGAAGGACCTAGATCACTATCATCTTTGTACGTCAAGAATGGTTACTATAATTAGCACCATGGAAACTCAGGTGTCCAATGGTCCGAGCGGAACCAGCCTGCCTAACGGCCCTGTCATTAGCACTAACGGCGCCACAGATGACAGCAAAACTAACCTGATCGTCAACTACCTGCCTCAGAACATGACCCAGGAAGAGTTCAAGAGCCTCTTTGGCAGCATCGGGGAAATCGAGTCCTGCAAATTGGTCAGAGACAAGATCACAGGCCAGAGCTTGGGATATGGCTTTGTAAACTATGTGGATCCCAACGACGCCGACAAGGCTATCAACACGCTCAACGGTCTCAAACTGCAGACCAAAACAATCAAGGTAAGAGATCTTCAATCACTCGATGGAGAGGAAGTAGGGAATAAAGCAGAGCCCAAGACAGACATGACAGCAGGAGGGGAGGAGAAGAGGGTGGAGAAGGGGAGGAATCTCAGCGGTGGAGACAAAAGCAGCAAAAGAAAGCAGAAA

Function

symbol description
elavl3 Predicted to enable RNA binding activity. Acts upstream of or within regulation of neurogenesis. Predicted to be located in viral nucleocapsid. Predicted to be part of ribonucleoprotein complex. Is expressed in several structures, including nervous system; neural plate; neural tube; neuronal stem cell; and presumptive structure. Orthologous to human ELAVL3 (ELAV like RNA binding protein 3).

GO:

id name namespace
GO:0050767 regulation of neurogenesis biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-76 Predicted to enable RNA binding activity. Acts upstream of or within regulation of neurogenesis. Predicted to be located in viral nucleocapsid. Predicted to be part of ribonucleoprotein complex. Is expressed in several structures, including nervous system; neural plate; neural tube; neuronal stem cell; and presumptive structure. Orthologous to human ELAVL3 (ELAV like RNA binding protein 3).

Ensembl:

ensembl_id ENSDARG00000014420

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052041 False 4469 mRNA 0.44 7 46800190 46818001
TCONS_00052042 False 3227 mRNA 0.46 7 46801272 46817838
TCONS_00052043 False 1120 mRNA 0.54 6 46802998 46817499
TCONS_00052044 False 530 mRNA 0.55 4 46803343 46811611
TCONS_00052045 True 863 lncRNA 0.48 3 46811351 46817856

Neighbor

gene id symbol gene type direction distance location
XLOC_026727 CR385086.1 coding downstream 37484 46757611 ~ 46762706 (-)
XLOC_026726 NA coding downstream 336934 46462585 ~ 46463256 (-)
XLOC_026725 cdip1 coding downstream 389803 46387860 ~ 46410387 (-)
XLOC_026724 snrnp25 coding downstream 420290 46377305 ~ 46379900 (-)
XLOC_026723 CR450782.1 coding downstream 573180 46224589 ~ 46227010 (-)
XLOC_026729 CR392045.1 coding upstream 101521 46919522 ~ 47105267 (-)
XLOC_026730 qtrt1 coding upstream 296327 47114328 ~ 47128096 (-)
XLOC_026731 NA coding upstream 312031 47130032 ~ 47131111 (-)
XLOC_026732 NA coding upstream 376737 47194738 ~ 47196960 (-)
XLOC_026733 tmed1a coding upstream 404095 47222096 ~ 47235997 (-)
XLOC_026722 NA non-coding downstream 582717 46153127 ~ 46217473 (-)
XLOC_026719 NA non-coding downstream 956490 45832077 ~ 45843700 (-)
XLOC_026736 NA non-coding upstream 1009201 47827202 ~ 47833114 (-)
XLOC_026738 NA non-coding upstream 1505539 48323540 ~ 48328133 (-)
XLOC_026739 NA non-coding upstream 1643496 48461497 ~ 48473754 (-)

Expression


Co-expression Network