si:dkey-6n6.1 (LOC106572038)


Basic Information

Item Value
gene id si:dkey-6n6.1
gene name LOC106572038
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52207226 ~ 52216054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988289.1
tgcttcctctctccactcctctctcctctcacctttggTTTTTTTTGGGGTGTGTGGCCAAAAAATATTTGTTGTTGGTGAGAGTATATAAAGGTCCTTCAGGAGTTGAGATTCCTCACACTCAGTTTGAAAGGGTTACTGTCCAAAGGAAGACTGACCAGGAGAGTCCAGAGCTGACCATGAACAGATTAGCGCTCCTATGTCTCTGCCTATGCGCAGCAGTCTCACTAATCAGTGGGAAGTCcagcaggagagcagagaagcTCAAGAGGTCCAAACCCCTGATAGCAACTGACTCATCTGAACCGAATGATACTAATGATGCTGTTTTCCCCGGCCGCAGCGGGCAGTGCTCGGTGAATGGGATGTCCCTGTTTGACGGGGCTATGTGGTCGCCTCAGCCCTGCCTTGTGTGCCAGTGTCAGATGGGAACTGTCAGCTGTCACCCTTTTCCCTGTGCCGGTTCAAACAACCAGCAGACAGTGGCTCCCAAATCCAAGAAGCCCTCCCCTAATACAGAGGACAAAGAGGGGATCCCAAAGTGGAAGAAGAGTTTCCAAAGGAGAGCAGGAAGTCAGAAGGAGGAGCAGCCTGTTACTCCAGCGAAAGTGAAGCAAGAAGAAGCAGTGAAGAAACAGGAAGTGGCAGTGAAGACAGAGGTTAGGAGGGCTGATGTCCCTGTGGCCAAGAGGCGTGACCCGAAGATAACCAAAGTCAGCCTTCCATACCTTCCTTACGATGACGATGATGACGATCACGATGACCACGACCACAGTGagcatgatgatgatgacgacgatGACGATTACATCATCAGGGCCATGGGAAAGCCCACCATGCGGGCCAACAGGCACCCGGTTGTGGCACCGACAGGGAGACCAGTCACCATGGTGACTGACCGACTGGCTACGACCACCATTAGGAAACCCGTGGTGAGGGTGCCGGGGCCAGGACATCCTGTGGTCACGTTCCCCAGGAGACACAGTATCATGGAGTCTCTCCCTGCTGGCTGCCTGCTCGTGGAGTCTCTGATCACCTGTGGCAGCACTGGCATGGCTCACATCCCCATCCTCTCAGATCAGGGGGTCAAGACCCTCTATCTGGCAGACAATAAGATCAGTAAGATCCCTCACCAGGCACTGGCTGGGCTGCCCAACCTGGAGTGGCTGGACCTGAGCAAGAACAAGCTGGACGACTCCTCCATCAGCCCTGACCTGTTCCGGACCCTGACCAAGCTGAGGAGGCTGAATTTAGATGGCAACAATCTGACCAAAGTCCCCTCGTTTCTACCGCCATCCCTGGTGGAGCTGAAGATCAATGACAACAAGATCCTGGGCCTCACACCTAGTAGCTTTAAAGGTTTGTCCAAACTGCTGACACTGGAGCTTGAGGATAACCACTTCCATGATGGGAATGTGTCACCTTTGACCTTCCGGCCCCTGAAGAAACTCATCTATCTGCGACTGGAGGACAACAAGTTACGGGCCATCCCCTCTGGGCTTCCTACGACCCTGCAGACACTTCACCTGTCAGATAACAGAATAGAAGAGGTGCATGAGAGGATCCTTAACAAGACTGTCAACCTCAGGTTTCTGGACCTCAGTTATAACAAGATCCGGGAGGACCGCATAGCCCCAAGGGCCTGGATACACCTGTTAAAGTTGGAGTCGTTGGACCTGTCGCACAATAAGCTGGTGCAtgttccctccttcctccctgtggGCCTTAAGCAGCTCCACCTGCACCACAACCAAATTGAGCGGATCCCTGGCTACGTGTTTGGCCACATGAAACCGGGACTGGACCTCCTGCACCTGTCCCACAACAGGCTGGCCAACAACGGCATTGATAATGTGTCCTTCCTGGGTCTGTACAACACTCTGACTGAACTCCTGCTGGACCACAACCAGCTTCGCTCCATCCCCAGGGGGCTGCTGAAGCTCAAGAGCCTGCAGCTCCTCCGCCTCAACCACAATGTTATCAGGTACGTTCCTCTGAACTCTCTGTGTGACACGCGCCTGAGCGACGACTCGCCCCTAGTCTCCGTTCACCTGGAGTACAACTTGATTGACCGGCGCCTCATCCCACCCACTGCCCTCTCCTGCATCAAGACCTACCACAGCATCATACTACGGCCACAGAGTCACGAGGAAGATTACCACCATGAAGATTACTAgtatccctcttcctcccctcctgcctcctcttTCACCCCTGTCTCCAACCCCCTGTCAGTTTGTCCTGGGTTTGACCTAGTGCCTCATTACATAATTccctctgactctgtctctgattGTCTTCTCTGATGCGTTGTGATTAGGTTAGTCAGACTTATGATACCCACACTGTATGCAACAGGTGAACTTAGACTTCTATCCTCTTACCATAAAAGTCTTACCATAAGTCCAGGGCAATGTTAATGCAACCAGCCCTTTGTCAGTGGGCTTCATTATCACAAGTAAACAGACAGATTATGTGTTTGTCTTTGACCTGTTTCACAGAGTCACTCTGTAAGGCAGTGTTAAGTTTTACTTGTGACTTTAATCTTGCTTGATAGTAGTATGTATCAGAAACAGAATGTGCAGTTAAGAAACAGAATGTGCAGTTACCCAGGGTGATCCAGGTAGCTACTTGATAGTAGTGCCCCCTACTCTAGACtcactgttgttttttttatgaaTTGATGAACAACTGTTTCAACTTTGTGACCAACTTGTGTAATGaaacattttgaaaataaaaCATGGAAAATAA
>XM_036988288.1
cttcctctctccactcctctctcctctcacctttggTTTTTTTTGGGGTGTGTGGCCAAAAAATATTTGTTGTTGGTGAGAGTATATAAAGGTCCTTCAGGAGTTGAGATTCCTCACACTCAGTTTGAAAGGGTTACTGTCCAAAGGAAGACTGACCAGGAGAGTCCAGAGCTGACCATGAACAGATTAGCGCTCCTATGTCTCTGCCTATGCGCAGCAGTCTCACTAATCAGTGGGAAGTCcagcaggagagcagagaagcTCAAGAGGTCCAAACCCCTGATAGCAACTGACTCATCTGAACCGAATGATACTAATGATGCTGTTTTCCCCGGCCGCAGCGGGCAGTGCTCGGTGAATGGGATGTCCCTGTTTGACGGGGCTATGTGGTCGCCTCAGCCCTGCCTTGTGTGCCAGTGTCAGATGGGAACTGTCAGCTGTCACCCTTTTCCCTGTGCCGGTTCAAACAACCAGCAGACAGTGGCTCCCAAATCCAAGAAGCCCTCCCCTAATACAGAGGACAAAGAGGGGATCCCAAAGTGGAAGAAGAGTTTCCAAAGGAGAGCAGGAAGTCAGAAGGAGGAGCAGCCTGTTACTCCAGCGAAAGTGAAGAAGCAAGAAGAAGCAGTGAAGAAACAGGAAGTGGCAGTGAAGACAGAGGTTAGGAGGGCTGATGTCCCTGTGGCCAAGAGGCGTGACCCGAAGATAACCAAAGTCAGCCTTCCATACCTTCCTTACGATGACGATGATGACGATCACGATGACCACGACCACAGTGagcatgatgatgatgacgacgatGACGATTACATCATCAGGGCCATGGGAAAGCCCACCATGCGGGCCAACAGGCACCCGGTTGTGGCACCGACAGGGAGACCAGTCACCATGGTGACTGACCGACTGGCTACGACCACCATTAGGAAACCCGTGGTGAGGGTGCCGGGGCCAGGACATCCTGTGGTCACGTTCCCCAGGAGACACAGTATCATGGAGTCTCTCCCTGCTGGCTGCCTGCTCGTGGAGTCTCTGATCACCTGTGGCAGCACTGGCATGGCTCACATCCCCATCCTCTCAGATCAGGGGGTCAAGACCCTCTATCTGGCAGACAATAAGATCAGTAAGATCCCTCACCAGGCACTGGCTGGGCTGCCCAACCTGGAGTGGCTGGACCTGAGCAAGAACAAGCTGGACGACTCCTCCATCAGCCCTGACCTGTTCCGGACCCTGACCAAGCTGAGGAGGCTGAATTTAGATGGCAACAATCTGACCAAAGTCCCCTCGTTTCTACCGCCATCCCTGGTGGAGCTGAAGATCAATGACAACAAGATCCTGGGCCTCACACCTAGTAGCTTTAAAGGTTTGTCCAAACTGCTGACACTGGAGCTTGAGGATAACCACTTCCATGATGGGAATGTGTCACCTTTGACCTTCCGGCCCCTGAAGAAACTCATCTATCTGCGACTGGAGGACAACAAGTTACGGGCCATCCCCTCTGGGCTTCCTACGACCCTGCAGACACTTCACCTGTCAGATAACAGAATAGAAGAGGTGCATGAGAGGATCCTTAACAAGACTGTCAACCTCAGGTTTCTGGACCTCAGTTATAACAAGATCCGGGAGGACCGCATAGCCCCAAGGGCCTGGATACACCTGTTAAAGTTGGAGTCGTTGGACCTGTCGCACAATAAGCTGGTGCAtgttccctccttcctccctgtggGCCTTAAGCAGCTCCACCTGCACCACAACCAAATTGAGCGGATCCCTGGCTACGTGTTTGGCCACATGAAACCGGGACTGGACCTCCTGCACCTGTCCCACAACAGGCTGGCCAACAACGGCATTGATAATGTGTCCTTCCTGGGTCTGTACAACACTCTGACTGAACTCCTGCTGGACCACAACCAGCTTCGCTCCATCCCCAGGGGGCTGCTGAAGCTCAAGAGCCTGCAGCTCCTCCGCCTCAACCACAATGTTATCAGGTACGTTCCTCTGAACTCTCTGTGTGACACGCGCCTGAGCGACGACTCGCCCCTAGTCTCCGTTCACCTGGAGTACAACTTGATTGACCGGCGCCTCATCCCACCCACTGCCCTCTCCTGCATCAAGACCTACCACAGCATCATACTACGGCCACAGAGTCACGAGGAAGATTACCACCATGAAGATTACTAgtatccctcttcctcccctcctgcctcctcttTCACCCCTGTCTCCAACCCCCTGTCAGTTTGTCCTGGGTTTGACCTAGTGCCTCATTACATAATTccctctgactctgtctctgattGTCTTCTCTGATGCGTTGTGATTAGGTTAGTCAGACTTATGATACCCACACTGTATGCAACAGGTGAACTTAGACTTCTATCCTCTTACCATAAAAGTCTTACCATAAGTCCAGGGCAATGTTAATGCAACCAGCCCTTTGTCAGTGGGCTTCATTATCACAAGTAAACAGACAGATTATGTGTTTGTCTTTGACCTGTTTCACAGAGTCACTCTGTAAGGCAGTGTTAAGTTTTACTTGTGACTTTAATCTTGCTTGATAGTAGTATGTATCAGAAACAGAATGTGCAGTTAAGAAACAGAATGTGCAGTTACCCAGGGTGATCCAGGTAGCTACTTGATAGTAGTGCCCCCTACTCTAGACtcactgttgttttttttatgaaTTGATGAACAACTGTTTCAACTTTGTGACCAACTTGTGTAATGaaacattttgaaaataaaaCATGGAAAATAA

Function

NR:

description
extracellular matrix protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988289.1 False 2754 mRNA 0.51 10 52207226 52216054
XM_036988288.1 True 2755 mRNA 0.51 10 52207228 52216054

Neighbor

gene id symbol gene type direction distance location
LOC110532339 LOC107599000 coding upstream 17789 52182228 ~ 52189437 (+)
LOC110532337 LOC106572044 coding upstream 30785 52174010 ~ 52176441 (+)
lzic lzic coding upstream 282784 51921146 ~ 51924442 (+)
tardbpl tardbp coding upstream 496874 51705866 ~ 51710352 (+)
pex14 pex14 coding upstream 887844 51202733 ~ 51319382 (+)
LOC110531199 LOC106572039 coding downstream 4783 52220837 ~ 52224935 (+)
dedd LOC106572035 coding downstream 13700 52229754 ~ 52234943 (+)
LOC110531200 LOC106572034 coding downstream 30318 52246372 ~ 52250891 (+)
LOC118966072 LOC106572034 coding downstream 35063 52204844 ~ 52253412 (+)
LOC110532344 LOC106572032 coding downstream 44124 52260178 ~ 52294856 (+)
G816788 NA non-coding upstream 7872 52198963 ~ 52199354 (+)
G816781 NA non-coding upstream 30485 52176538 ~ 52176741 (+)
G816778 NA non-coding upstream 34506 52172479 ~ 52172720 (+)
G816729 NA non-coding upstream 47399 52158839 ~ 52159827 (+)
G816765 NA non-coding upstream 49883 52157128 ~ 52157343 (+)
G816872 NA non-coding downstream 148586 52364640 ~ 52366398 (+)
G816873 bcas2 non-coding downstream 150899 52366953 ~ 52371758 (+)
G816875 NA non-coding downstream 156130 52372184 ~ 52375043 (+)
G816865 NA non-coding downstream 209303 52425357 ~ 52443755 (+)
G815767 casz1 other upstream 860732 51345372 ~ 51346494 (+)
G815610 NA other upstream 1128284 51078447 ~ 51078942 (+)
G815428 NA other upstream 1406845 50796214 ~ 50800381 (+)
G813139 NA other upstream 3091608 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 3200516 48962187 ~ 49006710 (+)
LOC110532349 LOC106591969 other downstream 107217 52323001 ~ 52325924 (+)
LOC110532368 LOC106572016 other downstream 510367 52692676 ~ 52734929 (+)
G819897 NA other downstream 2510817 54726871 ~ 54727376 (+)
G820665 NA other downstream 3017204 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 3314983 55531033 ~ 55647541 (+)

Expression


Co-expression Network