LOC110531200 (LOC106572034)


Basic Information

Item Value
gene id LOC110531200
gene name LOC106572034
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52246372 ~ 52250891 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988291.1
GTACCTTGTAAGTGGCCCCAAAGAACCCCTTTGGGTATGAGAGCACTTCGTAAAAATAGTTTGAATATTTCCAAGGCGATGGAAAATAAACGCCAGGCAGTGGCTGTTTCTTCACTTCTCCTTGTTTGCTCCAATGAAGGAGCATCTCGAGTTCTAGACAGACTCAGTGCTGGAGGAGTACGTTTAGTGGATGGCCCATACAACTGCTCTGGCAGGGTGGAGGTGTACTATGCAGGCCAGTGGGGTACAGTGTGTGATGACAACTGGGACCTGCTGGATGCCAAGGTAGTGTGTAGAGCACTGGGCTGTGGGGCAGCCCAGAAGGCCCTGGACCAGGCCCACTTTGGCGGGGGTAAGGGGGAGATCTGGCTAGATGATGTGGAATGTTCTGGGAATGAAGAGTCACTGCTTAGCTGCAGCTCAGATGGTCTTGGGTCACACAACTGTGGACACTTTGAGGATGCAGGAGTGATATGTGAGGGTCAGTCAGGTCAACCCCCTTCAGACTCCCAttCTGGCTTGACAGTGCGCATAGTTGATGGTCCCAATCACTGCTCTGGAAGGGTGGAGGTCTACCATGATGGGAGTTGGGGGACAGTCTGTGATGATAATTGGGGTTTCCTAGATGCCCAAGTTGTATGTAGGGAGCTGAGCTGTGGACCAGCCACAGAGGCTCCTCACCAGGCTTACTTTGGTGAGGGGAGTGGCTCAATCCTATTGGACGATGTGGCATGCATGGGAAGTGAGGGATCTTTACTGGAATGCAACTCAGGAGGGATAGGAAACCATAACTGTGGCCATGATGAAGATGCCAGTGTAACTTGCATGATGGTGGTCCCAGATGATGGCCCGTTGATCCGGCTGGTGGATGGTCCTGATCAGTGTTCAGGGAGGGTGGAAGTGTATTATGCGGGGCAGTGGGGTACGGTGTGTGATGATGACTGGGACGTGAGCGACGCTGACGTGGTCTGCAGACAGCTCAGCTGTGGGTGGGCTATGGATGCCCCCGGACAGGCCTGGTTTGGTATGGGAGTTGGCATTCCCATTCTGCTGGACAACATAGCCTGTGTTGGCACAGAAGGCACTCTCTTTGACTGCCCCTCTGAGGCGATAGGTCAGCATAACTGCATGCATCCTGAGGATGCGAGTGTGGTCTGCTCAGGTGAGATTAAAGGGGAAGTTCCGTATTTTACTGTTAGATGGTTCCTGACCCTGAAAGTAGTTTATGGGCGAAACTGTAATCTTCGGTTGAGTTTTATCTAAACAGCTACTACAAATTTCAGCTCATTTAAGGCACAGTTAGCTTTATTTATTAATAACGCTTTTCAaggtaacatacagtatatgcaaCAACTCTTTGTTTTCCATGATCCTCCCTATGGATTGCAGGTTCACACCAGAGTGAGTACATTAATTTGTCTGCACACTACACAATAATCTCCACAGCCTGATGCATCAATTTGTTAACAGATTATTTACCTATTTACCTGGACCTTCAATTCGCTTGGCCGGTGGCTCCAACAACTGCTCTGGTAGAGTGGAGGTGTTCCACTCTGGCCAGTGGGGTACAGTGTGTGATGATGACTGGGATCTGAAACATATGTACACCTCGTAATTGATcgttaaaatgtttttatttgccTCTCGGGTGGCGC
>TU929001
GTGGAGGTCTACCATGATGGGAGTTGGGGGACAGTCTGTGATGATAATTGGGGTTTCCTAGATGCCCAAGTTGTATGTAGGGAGCTGAGCTGTGGACCAGCCACAGAGGCTCCTCACCAGGCTTACTTTGGTGAGGGGAGTGGCTCAATCCTATTGGACGATGTGGCATGCATGGGAAGTGAGGGATCTTTACTGGAATGCAACTCAGGAGGGATAGGAAACCATAACTGTGGCCATGATGAAGATGCCAGTGTAACTTGCATGATGGTGGTCCCAGATGATGGCCCGTTGATCCGGCTGGTGGATGGTCCTGATCAGTGTTCAGGGAGGGTGGAAGTGTATTATGC

Function

NR:

description
deleted in malignant brain tumors 1 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988291.1 False 1655 mRNA 0.50 6 52246372 52250891
TU929001 True 347 lncRNA 0.52 2 52249545 52250147

Neighbor

gene id symbol gene type direction distance location
dedd LOC106572035 coding upstream 11429 52229754 ~ 52234943 (+)
LOC110531199 LOC106572039 coding upstream 21437 52220837 ~ 52224935 (+)
si:dkey-6n6.1 LOC106572038 coding upstream 30318 52207226 ~ 52216054 (+)
LOC110532339 LOC107599000 coding upstream 56935 52182228 ~ 52189437 (+)
LOC110532337 LOC106572044 coding upstream 69931 52174010 ~ 52176441 (+)
LOC118966072 LOC106572034 coding downstream 226 52204844 ~ 52253412 (+)
LOC110532344 LOC106572032 coding downstream 9287 52260178 ~ 52294856 (+)
LOC110532349 LOC106591969 coding downstream 72110 52323001 ~ 52325924 (+)
sike1 sike1 coding downstream 234632 52485523 ~ 52488233 (+)
LOC118936401 LOC106566850 coding downstream 252106 52502997 ~ 52504594 (+)
G816788 NA non-coding upstream 47018 52198963 ~ 52199354 (+)
G816781 NA non-coding upstream 69631 52176538 ~ 52176741 (+)
G816778 NA non-coding upstream 73652 52172479 ~ 52172720 (+)
G816729 NA non-coding upstream 86545 52158839 ~ 52159827 (+)
G816765 NA non-coding upstream 89029 52157128 ~ 52157343 (+)
G816872 NA non-coding downstream 113749 52364640 ~ 52366398 (+)
G816873 bcas2 non-coding downstream 116062 52366953 ~ 52371758 (+)
G816875 NA non-coding downstream 121293 52372184 ~ 52375043 (+)
G816865 NA non-coding downstream 174466 52425357 ~ 52443755 (+)
G816914 NA non-coding downstream 179095 52429986 ~ 52431199 (+)
G815767 casz1 other upstream 899878 51345372 ~ 51346494 (+)
G815610 NA other upstream 1167430 51078447 ~ 51078942 (+)
G815428 NA other upstream 1445991 50796214 ~ 50800381 (+)
G813139 NA other upstream 3130754 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 3239662 48962187 ~ 49006710 (+)
LOC110532368 LOC106572016 other downstream 475530 52692676 ~ 52734929 (+)
G819897 NA other downstream 2475980 54726871 ~ 54727376 (+)
G820665 NA other downstream 2982367 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 3280146 55531033 ~ 55647541 (+)

Expression


Co-expression Network