LOC110532349 (LOC106591969)


Basic Information

Item Value
gene id LOC110532349
gene name LOC106591969
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52323001 ~ 52325924 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474822.2
AAACCCTCTTGCTTCCTCTCTGCTCTGATGTCATGTCAGTTTATTCTACCAAATACCTTCCCTATGGACTATTTTGGTCTGGGTTCAACTATGTCACAAAAATGCACCTGACACTGATTTTTTTGaatatattatttttaattttacctcCCCCCCTCCTTTTTTTCGATATTTTCTCATCGCTGGAACTCCCCAACGCGAGGCGAAAGTGGAATCATgcccgaaacatgacccacctaACCGCGCTCCTTAACACACGCCACcttaacccggaaaccagccgcaccaatgtgtcggatgaAACACGTTCCCTTATGCACATTCCATGATCGAACGTTCTAAACACACTTCTTACCGGCAAAAAAAGAAGTTGTTACCGACGATATAACGTTACTACCACTATGTCGCAGTTTTTTTACTAGGTGTCTTCAGGACTTGCCTTAAATTAATATGAATGATGTACATCAAATTGTTAAGTCAGCCTCCGAGACTCCAGCTAACAAGAATGAAAAGGGGTTCAAGATGTATACCTTTATAGGAAGCTAACGTTACATAGATAACTATGAAGATGGTGTTAAAGCACGCCGTACCAGTGATAGTGGTCCAGAGCCACTGCTCCTGTGTTGCAGGAAGTGCTATGTGCAATCATCTGGTGGCCCTTCTTTACCAGACTCAACTAAACATTCCTGCTGCACCACCAGTTCACAGCTGCACAGACACAGAATAGTGTTGGCACAAGCCAAGAACACTTGTGAGTCTATCAATATCCATAAAAAAATGCACCTGAAAAGTATTCAGCCTATGTAACAGTAAATCCTTGTTAATTAGGGTGTGAAGACAGTTCCGGTTGATGGGATAGTTCCGTAAACCTACAAACTCGTGTGCTGATGGAATAAGATAAGTTGGAGGTTCCTAGAATGGAAACATTTTAGAAAACATTTTCTTGTGATTGTTTTTGTATCCAGATGATGAGCTTAAACAGTGGCGTCTTTACGATGTAATGACACATTTTGGGACAAAGACTGGGGGGAAATATATAATCTATAAATCTGTATTTTAATTAATTTTATTTGAACTTTCGGGCTTGTGCTGTTTCTGGAAAAGTTACATGAGTCTTAGTCATAGTAATCTCGCCAACCTGGTGTTaaggttttaaaatgttttgcagAAGTTCTCTCTACATAGCACTCAATGGATACATGCCTGACATGGACCTTCTCCGCGTCTCAGAAACGTATGCCAACTTTTCTCTACTTACTTCCCCTCTTgtgacaacaatggaaatgtcagCTGACGTGCCCCTGGTTGAATCCGCCTTTGGGCCAGTGCAAGCTGGTAGTGTGCTGTCCTATCAGCTTCCACAGCCAAAGACCATGGAATTGTGAAGATTACCGATGCCCCTTCTCCACCAATACTTCCATTAGATGGCTACAGGCTTCAGTCTTCCCAGTGTGCTTACGTCCTTAGCCATCGGGAGCAGTTCCACGTCAAGGCATTAGAGACAACCTACGAGATGTCACAGAGAGTTGAGGTTGCAGCCCGGAATGGCATCAGCTCAGGAAAATTAGAATAACATCCTCTCGTTTTCGAGAGGTTTGCCATGTCCGGGGAGAGACCTCGGCTGACCACCTCGCTGAGCGAATGTTCAAGGGATCTGGTATGCAGACCGTGGAGATGAAGAGGGGGCTAGCCATGGAGCCAGTGGCTGTACAGGAGTACTGCACACTGAAGAATGTTAACTTATTTCCGTGTGGCTTCATAGTGCACCCAGATGCTCCGTGGTTAGGATCCTCTCCAGATGGCATCATATTTGATCCCAGTGTGAGACCACACTTTGGACTCTTAGAGGTCAAGTGCCCAAATGTACCAAGTTATGTTGAGTGCCCTTACCTGAAGATACAGAATGGAGAGCTGAAGTTGAAGAGATCTCATGCTTACTACTAGGTGCAAGGTCAAATCCTTCTCACAGGTTGTAGCTGGTGAGACTTTGTCATCTGTGCACAGGATGACAACCTAGTTGAAAGGATATATAAAGATCTACAGGTTTCAAAAACTATAAGAGAGAAGGTTGACCACTTATATTTACCACTACTTGCAGAAGTGTCTCTCGCACCTGAATGGATCCCATGCATGGGTGCCAAGTTTAGTGGTTTCACAAAAAATAAGTATTGATGTTCTTGTGAAGAAAACTATAGTAGaatagatttgtttaaaaaaatgtatttcagcaAATGTTCAACAGTTCAGTTAATCAATTACACATCTCCAACGTTGTATTAAATCTTGCATTCTGGC
>TU929026
cggaaaccagccgcaccaatgtgtcggatgaAACACGTTCCCTTATGCACATTCCATGATCGAACGTTCTAAACACACTTCTTACCGGCAAAAAAAGAAGTTGTTACCGACGATATAACGTTACTACCACTATGTCGCAGTTTTTTTACTAGGTGTCTTCAGGACTTGCCTTAAATTAATATGAATGATGTACATCAAATTGTTAAGTCAGCCTCCGAGACTCCAGCTAACAAGAATGAAAAGGGGTTCAAGATGTATACCTTTATAGGAAGCTAACGTTACATAGATAACTATGAAGATGGTGTTAAAGCACGCCGTACCAGTGATAGTGGTCCAGAGCCACTGCTCCTGTGTTGCAGGAAGTGCTATGTGCAATCATCTGGTGGCCCTTCTTTACCAGACTCAACTAAACATTCCTGCTGCACCACCAGTTCACAGCTGCACAGACACAGAATAGTGTTGGCACAAGCCAAGAACACTTGTGAGTCTATCAATATCCATAAAAAAATGCACCTGAAAAGTATTCAGCCTATGTAACAGTAAATCCTTGTTAATTAGGGTGTGAAGACAGTTCCGGTTGATGGGATAGTTCCGTAAACCTACAAACTCGTGTGCTGATGGAATAAGATAAGTTGGAGGTTCCTAGAATGGAAACATTTTAGAAAACATTTTCTTGTGATTGTTTTTGTATCCAGATGATGAGCTTAAACAGTGGCGTCTTTACGATGTAATGACACATTTTGGGACAAAGACTGGGGGGAAATATATAATCTATAAATCTGTATTTTAATTAATTTTATTTGAACTTTCGGGCTTGTGCTGTTTCTGGAAAAGTTACATGAGTCTTAGTCATAGTAATCTCGCCAACCTGGTGTTaaggttttaaaatgttttgcagAAGTTCTCTCTACATAGCACTCAATGGATACATGCCTGACATGGACCTTCTCCGCGTCTCAGAAACGTATGCCAACTTTTCTCTACTTACTTCCCCTCTTgtgacaacaatggaaatgtcagCTGACGTGCCCCTGGTTGAATCCGCCTTTGGGCCAGTGCAAGCTGGTAGTGTGCTGTCCTATCAGCTTCCACAGCCAAAGACCATGGAATTGTGAAGATTACCGATGCCCCTTCTCCACCAATACTTCCATTAGATGGCTACAGGCTTCAGTCTTCCCAGTGTGCTTACGTCCTTAGCCATCGGGAGCAGTTCCACGTCAAGGCATTAGAGACAACCTACGAGATGTCACAGAGAGTTGAGGTTGCAGCCCGGAATGGCATCAGCTCAGGAAAATTAGAATAACATCCTCTCGTTTTCGAGAGGTTTGCCATGTCCGGGGAGAGACCTCGGCTGACCACCTCGCTGAGCGAATGTTCAAGGGATCTGGTATGCAGACCGTGGAGATGAAGAGGGGGCTAGCCATGGAGCCAGTGGCTGTACAGGAGTACTGCACACTGAAGAATGTTAACTTATTTCCGTGTGGCTTCATAGTGCACCCAGATGCTCCGTGGTTAGGATCCTCTCCAGATGGCATCATATTTGATCCCAGTGTGAGACCACACTTTGGACTCTTAGAGGTCAAGTGCCCAAATGTACCAAGTTATGTTGAGTGCCCTTACCTGAAGATACAGAATGGAGAGCTGAAGTTGAAGAGATCTCATGCTTACTACTAGGTGCAAGGTCAAATCCTTCTCACAGGTTGTAGCTGGTGAGACTTTGTCATCTGTGCACAGGATGACA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106591969

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474822.2 False 2295 mRNA 0.43 2 52323001 52325924
TU929026 True 1741 TUCP 0.44 2 52323271 52325640

Neighbor

gene id symbol gene type direction distance location
LOC110532344 LOC106572032 coding upstream 28145 52260178 ~ 52294856 (+)
LOC118966072 LOC106572034 coding upstream 69589 52204844 ~ 52253412 (+)
LOC110531200 LOC106572034 coding upstream 72110 52246372 ~ 52250891 (+)
dedd LOC106572035 coding upstream 88058 52229754 ~ 52234943 (+)
LOC110531199 LOC106572039 coding upstream 98066 52220837 ~ 52224935 (+)
sike1 sike1 coding downstream 159599 52485523 ~ 52488233 (+)
LOC118936401 LOC106566850 coding downstream 177073 52502997 ~ 52504594 (+)
htr6 LOC106572282 coding downstream 187587 52513511 ~ 52514463 (+)
vwa1 LOC106572023 coding downstream 224203 52550127 ~ 52567525 (+)
LOC110532365 LOC106572021 coding downstream 280519 52606443 ~ 52621080 (+)
G816788 NA non-coding upstream 123647 52198963 ~ 52199354 (+)
G816781 NA non-coding upstream 146260 52176538 ~ 52176741 (+)
G816778 NA non-coding upstream 150281 52172479 ~ 52172720 (+)
G816872 NA non-coding downstream 38716 52364640 ~ 52366398 (+)
G816873 bcas2 non-coding downstream 41029 52366953 ~ 52371758 (+)
G816875 NA non-coding downstream 46260 52372184 ~ 52375043 (+)
G816865 NA non-coding downstream 99433 52425357 ~ 52443755 (+)
G816914 NA non-coding downstream 104062 52429986 ~ 52431199 (+)
G815767 casz1 other upstream 976507 51345372 ~ 51346494 (+)
G815610 NA other upstream 1244059 51078447 ~ 51078942 (+)
G815428 NA other upstream 1522620 50796214 ~ 50800381 (+)
G813139 NA other upstream 3207383 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 3316291 48962187 ~ 49006710 (+)
LOC110532368 LOC106572016 other downstream 400497 52692676 ~ 52734929 (+)
G819897 NA other downstream 2400947 54726871 ~ 54727376 (+)
G820665 NA other downstream 2907334 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 3205113 55531033 ~ 55647541 (+)
G820944 NA other downstream 3371716 55697640 ~ 55697978 (+)

Expression


Co-expression Network