Item | Value |
---|---|
gene id | LOC110532346 |
gene name | trim33 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048573.1 |
NCBI id | CM023227.2 |
chromosome length | 79455637 |
location | 52329120 ~ 52355630 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
trim33 | Predicted to enable DNA binding activity; transferase activity; and zinc ion binding activity. Acts upstream of or within several processes, including hemopoiesis; leukocyte chemotaxis; and regulation of transcription elongation from RNA polymerase II promoter. Predicted to be located in nucleus. Is expressed in several structures, including blood vessel; germ ring; gonad; intermediate cell mass of mesoderm; and nervous system. Orthologous to human TRIM33 (tripartite motif containing 33). |
description |
---|
E3 ubiquitin-protein ligase TRIM33 isoform X3 |
id | description |
---|---|
K08883 | TRIM33, TIF1G; tripartite motif-containing protein 33 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036988293.1 | False | 3858 | mRNA | 0.52 | 21 | 52329120 | 52354865 |
XM_021616170.2 | False | 4150 | mRNA | 0.53 | 20 | 52329120 | 52355626 |
XM_021616169.2 | False | 4154 | mRNA | 0.53 | 20 | 52329120 | 52355627 |
XM_021616165.2 | False | 4209 | mRNA | 0.53 | 21 | 52329120 | 52355628 |
XM_021616164.2 | False | 4213 | mRNA | 0.53 | 21 | 52329120 | 52355629 |
XM_021616166.2 | True | 4202 | mRNA | 0.53 | 21 | 52329120 | 52355630 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
slc66a1 | pqlc2 | coding | downstream | 6220 | 52318113 ~ 52322900 (-) |
LOC101268902 | nr1h4 | coding | downstream | 18697 | 52295184 ~ 52310423 (-) |
LOC110532341 | NA | coding | downstream | 82510 | 52235695 ~ 52246610 (-) |
LOC110531198 | LOC107390564 | coding | downstream | 128805 | 52195423 ~ 52200315 (-) |
tpk2 | LOC106572041 | coding | downstream | 135027 | 52189483 ~ 52194093 (-) |
LOC110532350 | bcas2 | coding | upstream | 10131 | 52365761 ~ 52371772 (-) |
dennd2c | dennd2c | coding | upstream | 16432 | 52372062 ~ 52406309 (-) |
LOC110532352 | ampd1 | coding | upstream | 50819 | 52406449 ~ 52443628 (-) |
LOC110532354 | csde1 | coding | upstream | 97078 | 52452708 ~ 52473256 (-) |
tmco4 | tmco4 | coding | upstream | 158935 | 52514565 ~ 52530602 (-) |
G817906 | NA | non-coding | downstream | 11568 | 52285618 ~ 52317552 (-) |
G817924 | NA | non-coding | downstream | 45563 | 52282860 ~ 52283557 (-) |
G817920 | LOC106566841 | non-coding | downstream | 52068 | 52275023 ~ 52277052 (-) |
G817875 | LOC106572038 | non-coding | downstream | 112904 | 52214465 ~ 52216216 (-) |
G817852 | NA | non-coding | downstream | 161262 | 52167457 ~ 52167858 (-) |
G817935 | NA | non-coding | upstream | 1671 | 52357301 ~ 52357544 (-) |
G817944 | NA | non-coding | upstream | 31516 | 52387146 ~ 52395519 (-) |
G817964 | NA | non-coding | upstream | 67546 | 52423176 ~ 52423770 (-) |
G817984 | NA | non-coding | upstream | 119199 | 52474829 ~ 52475328 (-) |
G817986 | NA | non-coding | upstream | 120299 | 52475929 ~ 52476128 (-) |
G817848 | NA | other | downstream | 175478 | 52153282 ~ 52153642 (-) |
G815045 | NA | other | downstream | 2109272 | 50218867 ~ 50219848 (-) |
G815044 | NA | other | downstream | 2110423 | 50218356 ~ 50218697 (-) |
G814157 | edem2 | other | downstream | 2593009 | 49735145 ~ 49736111 (-) |
G814020 | NA | other | downstream | 2862358 | 49463957 ~ 49466762 (-) |
LOC110532367 | LOC106572017 | other | upstream | 307823 | 52663417 ~ 52668762 (-) |
G818117 | NA | other | upstream | 371537 | 52727167 ~ 52731623 (-) |
LOC110531203 | NA | other | upstream | 1649917 | 54005547 ~ 54065096 (-) |
cep104 | cep104 | other | upstream | 1929417 | 54247726 ~ 54294920 (-) |
G820398 | NA | other | upstream | 2398618 | 54754248 ~ 54754641 (-) |