LOC110532366


Basic Information

Item Value
gene id LOC110532366
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52659674 ~ 52663309 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474827.2
ATCTATACGACTGGCAAGCACATTTCTACGGAAGCCCATACAGTATGGACTATATAGCCTGCATTTGAATAAGAGTTTGTTCAACAACAAAAGTTAAGAAATAAATAAGGGTTAAGGCTGTTGTCATAAACTGACTTCCAGTTGTCATGCCTGTTTATGACATATTTATAACACTGTTATGATGGATTCATGGGAAGTTTAACCATGTTTTTCTTCTGTCATGTTCTATCAATCCATTCATGAGGCTATGGCCCTCTTGCGCTGTTGCCCTTCTCATCCCTCCAGCAGATGAGTGTGGTGACGGTGGCCCCCGGGGGACAGCCATCCCTCGCCTTTATCAAAGAGGGCCCGAGATCATGGCCAGGCTCTGCCTGAAAGAAAGCAGTAcgggagaaagacaaagagagaggagagataaagagagccaTGAAGGGGGAGTTAGAGATAGACATGCAGTCCCTGCGGTCTGCTGGTAATGAACAATCTGGTCAAGCCGCTACAGTGTGGGCATATGGGGAGACGGGCTCAATGACTGCGGAGCCTTGAGGGCCGCAGATGTAAGTGTGTCTGTCTGAGGATGATGCTTCTGTGGACTCTCCCTTCACCTCCAAGTCAGACAACATCAGCTGTACACGGAGAAGACTAACCTGGTCAACCTGCAGTTCCTGTTCTTTCCTGGTGATGCTGCTGGCAATCATTATAGGGAAAGGGGGACCCAGCATTGAGCTGTGCCCCTAGCGGCCCCACACCAGACTTCTGGCGCTGCCGGTCCTAGCTAGCCTGATGCTGCACACCCTGCTGCTCATCCTGGGCCAGGTGTCCACTCTGCAGATCACCACCACCCAGTACTGATACTGATAGTACCGCATGCCTTGGTCTGTCTGCGTCTGCTACAAGGGAGGCAACCGTCCAATAAGCAGTACAAGCGCCTAGAAGTCCTCCTGTCAGACTCGCCCTCCTAGCCCAACCACTAGCCCCGCCCCAATGCAGTCATTGGCCTGAGCTAGCATCAGCCTCCCCTCCCATTGGACAATATTATTCCCCCGGCCAGAGTGCCTGGGATCTGAGTCAAATGAGCAAACTCTGAGGTATGTTTTACACATTTTAATTTTCAACAGCAATGTGAAGTACAATACTGTGCCACTGGTAGCAGCCAGCAATATTAGACTATAAAACGTCAAATAACCTTGTCAGGTTGCATTCATTTGTGAGAATTGAGAAACTTGAAATGTTTAGTAAAGAGCGAATTTGATCCCATAAATAAAGATTTGTTCAATAGGGGACTCCGATGGA
>XR_005053291.1
ATCTATACGACTGGCAAGCACATTTCTACGGAAGCCCATACAGTATGGACTATATAGCCTGCATTTGAATAAGAGTTTGTTCAACAACAAAAGTTAAGAAATAAATAAGGGTTAAGGCTGTTGTCATAAACTGACTTCCAGTTGTCATGCCTGTTTATGACATATTTATAACACTGTTATGATGGATTCATGGGAAGTTTAACCATGTTTTTCTTCTGTCATGTTCTATCAATCCATTCATGAGGCTATGGCCCTCTTGCGCTGTTGCCCTTCTCATCCCTCCAGCAGATGAGTGTGGTGACGGTGGCCCCCGGGGGACAGCCATCCCTCGCCTTTATCAAAGAGGGCCCGAGATCATGGCCAGGCTCTGCCTGAAAGAAAGCAGTAcgggagaaagacaaagagagaggagagataaagagagccaTGAAGGGGGAGTTAGAGATAGACATGCAGTCCCTGCGGTCTGCTGGTAATGAACAATCTGGTCAAGCCGGTGAGTGCTGAGGTCATAACTACCCTCATATTGGCACATCTTCATATCATCATGGTCACTGGTATGAATagcatctctctgtctttgtaGCCCAAACATGGTCTGTTCTACTGTTAATAAACTGTGCTCTGGATCAGATGACATTCACAAATACTTGAAATAGCTTATCTATTGACTACTGTGAAGTTGGTCCAATTAAATGAAAGACAGGAAGAATGGTATCCTAACTTGTTGCGGGTCTATAGGATACCTTGTGAGTATAAAACCATCACAGAACAggtgaggaatttattctgcaatgaTTCTAATCTAACCTAGGAAAAGGATGCCTATTTCTAATTATTCTAGAATGCAAAGAAACAAAATTGCTGTTCTCTCTTCTCACTAACAGCAAACAATTTCATCTTATCAATTTGTTATGAACAAACGTGTCCATCTTATCCCCCATTTGCACAAAATACTAGGCTACTTGCCTGCTTGCAATACTTCAAGCACTAGAAACTGTGGATACGCATGGTCTAAAGTTTGCGAGATGGTGAGCACATTCTAACCTCAAATTGAGTTTTTATAAAGGTACATTTTGTGTGAAAACTGCCACACGCATGTTTTAGGGTATGTTTTGTATGTACGCATGGTTTATAAATTAGGCCCCAGAGGAGGAGACGGGACTAGAATGACATTGATTGAAAGTATGGAAAAGGAGAAAGACAAAGAAACTCTGTAGCGAATGGAGGTACATGAAAGGACAGACGAAGGGCAGATTCTTCCATTGATTGGCTCAGTTCACTTTGGCacagctcagtagtgtgaaaagggtacaGGCCTAAGGTCTCAcccactccccatctccctccctgtgtAGCTACAGTGTGGGCATATGGGGAGACGGGCTCAATGACTGCGGAGCCTTGAGGGCCGCAGATGTAAGTGTGTCTGTCTGAGGATGATGCTTCTGTGGACTCTCCCTTCACCTCCAAGTCAGACAACATCAGCTGTACACGGAGAAGACTAACCTGGTCAACCTGCAGTTCCTGTTCTTTCCTGGTGATGCTGCTGGCAATCATTATAGGGAAAGGGGGACCCAGCATTGAGCTGTGCCCCTAGCGGCCCCACACCAGACTTCTGGCGCTGCCGGTCCTAGCTAGCCTGATGCTGCACACCCTGCTGCTCATCCTGGGCCAGGTGTCCACTCTGCAGATCACCACCACCCAGTACTGATACTGATAGTACCGCATGCCTTGGTCTGTCTGCGTCTGCTACAAGGGAGGCAACCGTCCAATAAGCAGTACAAGCGCCTAGAAGTCCTCCTGTCAGACTCGCCCTCCTAGCCCAACCACTAGCCCCGCCCCAATGCAGTCATTGGCCTGAGCTAGCATCAGCCTCCCCTCCCATTGGACAATATTATTCCCCCGGCCAGAGTGCCTGGGATCTGAGTCAAATGAGCAAACTCTGAGGTATGTTTTACACATTTTAATTTTCAACAGCAATGTGAAGTACAATACTGTGCCACTGGTAGCAGCCAGCAATATTAGACTATAAAACGTCAAATAACCTTGTCAGGTTGCATTCATTTGTGAGAATTGAGAAACTTGAAATGTTTAGTAAAGAGCGAATTTGATCCCATAAATAAAGATTTGTTCAATAGGGGACTCCGATGGA
>XR_002474825.2
AGAATAAGTTGCGATAAGATTAGCATTAACACTTGTTCAAATGAATTTTGTGAGGTGTTTTAAGCTCGTCTTCTTTGATTATTGTTTAGCTCTATTGTCTTTCTTTTAAACCATGTCTTGCAGTGCCTACACAATTCTCAAACACCCTGCATACTTTTGCAagtgaaggcttcagggtgctACCTCTCAGCTACAAACCTCTGGATGGGCAGACTGACTTGAGCACCATTGAACAACGTTTCACCATTGAACCACATTTTATGTTCTTTATGTCCCTCCTAGCTACTACCCAAGTCCTCCATGACCTCTTCTAAACCTCTACCTGTAGCGCCGATTGTGAACTATCACATTTACTAGGTGTTGATGGAGATGTGTTTGTGTCCACAGGGGGGAGTTAGAGATAGACATGCAGTCCCTGCGGTCTGCTGGTAATGAACAATCTGGTCAAGCCGGTGAGTGCTGAGGTCATAACTACCCTCATATTGGCACATCTTCATATCATCATGGTCACTGGTATGAATagcatctctctgtctttgtaGCCCAAACATGGTCTGTTCTACTGTTAATAAACTGTGCTCTGGATCAGATGACATTCACAAATACTTGAAATAGCTTATCTATTGACTACTGTGAAGTTGGTCCAATTAAATGAAAGACAGGAAGAATGGTATCCTAACTTGTTGCGGGTCTATAGGATACCTTGTGAGTATAAAACCATCACAGAACAggtgaggaatttattctgcaatgaTTCTAATCTAACCTAGGAAAAGGATGCCTATTTCTAATTATTCTAGAATGCAAAGAAACAAAATTGCTGTTCTCTCTTCTCACTAACAGCAAACAATTTCATCTTATCAATTTGTTATGAACAAACGTGTCCATCTTATCCCCCATTTGCACAAAATACTAGGCTACTTGCCTGCTTGCAATACTTCAAGCACTAGAAACTGTGGATACGCATGGTCTAAAGTTTGCGAGATGGTGAGCACATTCTAACCTCAAATTGAGTTTTTATAAAGGTACATTTTGTGTGAAAACTGCCACACGCATGTTTTAGGGTATGTTTTGTATGTACGCATGGTTTATAAATTAGGCCCCAGAGGAGGAGACGGGACTAGAATGACATTGATTGAAAGTATGGAAAAGGAGAAAGACAAAGAAACTCTGTAGCGAATGGAGGTACATGAAAGGACAGACGAAGGGCAGATTCTTCCATTGATTGGCTCAGTTCACTTTGGCacagctcagtagtgtgaaaagggtacaGGCCTAAGGTCTCAcccactccccatctccctccctgtgtAGCTACAGTGTGGGCATATGGGGAGACGGGCTCAATGACTGCGGAGCCTTGAGGGCCGCAGATGTAAGTGTGTCTGTCTGAGGATGATGCTTCTGTGGACTCTCCCTTCACCTCCAAGTCAGACAACATCAGCTGTACACGGAGAAGACTAACCTGGTCAACCTGCAGTTCCTGTTCTTTCCTGGTGATGCTGCTGGCAATCATTATAGGGAAAGGGGGACCCAGCATTGAGCTGTGCCCCTAGCGGCCCCACACCAGACTTCTGGCGCTGCCGGTCCTAGCTAGCCTGATGCTGCACACCCTGCTGCTCATCCTGGGCCAGGTGTCCACTCTGCAGATCACCACCACCCAGTACTGATACTGATAGTACCGCATGCCTTGGTCTGTCTGCGTCTGCTACAAGGGAGGCAACCGTCCAATAAGCAGTACAAGCGCCTAGAAGTCCTCCTGTCAGACTCGCCCTCCTAGCCCAACCACTAGCCCCGCCCCAATGCAGTCATTGGCCTGAGCTAGCATCAGCCTCCCCTCCCATTGGACAATATTATTCCCCCGGCCAGAGTGCCTGGGATCTGAGTCAAATGAGCAAACTCTGAGGTATGTTTTACACATTTTAATTTTCAACAGCAATGTGAAGTACAATACTGTGCCACTGGTAGCAGCCAGCAATATTAGACTATAAAACGTCAAATAACCTTGTCAGGTTGCATTCATTTGTGAGAATTGAGAAACTTGAAATGTTTAGTAAAGAGCGAATTTGATCCCATAAATAAAGATTTGTTCAATAGGGGACTCCGATGGA
>TU929233
TATCTATTGACTACTGTGAAGTTGGTCCAATTAAATGAAAGACAGGAAGAATGGTATCCTAACTTGTTGCGGGTCTATAGGATACCTTGTGAGTATAAAACCATCACAGAACAggtgaggaatttattctgcaatgaTTCTAATCTAACCTAGGAAAAGGATGCCTATTTCTAATTATTCTAGAATGCAAAGAAACAAAATTGCTGTTCTCTCTTCTCACTAACAGCAAACAATTTCATCTTATCAATTTGTTATGAACAAACGTGTCCATCTTATCCCCCATTTGCACAAAATACTAGGCTACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474827.2 False 1293 mRNA 0.49 5 52659674 52663309
XR_005053291.1 False 2155 mRNA 0.45 4 52659674 52663309
XR_002474825.2 False 2111 mRNA 0.45 3 52660125 52663309
TU929233 True 305 lncRNA 0.35 1 52660742 52661046

Neighbor

gene id symbol gene type direction distance location
LOC110532365 LOC106572021 coding upstream 38594 52606443 ~ 52621080 (+)
vwa1 LOC106572023 coding upstream 92149 52550127 ~ 52567525 (+)
htr6 LOC106572282 coding upstream 145211 52513511 ~ 52514463 (+)
LOC118936401 LOC106566850 coding upstream 155080 52502997 ~ 52504594 (+)
sike1 sike1 coding upstream 171441 52485523 ~ 52488233 (+)
LOC110531201 NA coding downstream 18202 52681511 ~ 52684202 (+)
LOC110532368 LOC106572016 coding downstream 29367 52692676 ~ 52734929 (+)
LOC110532370 LOC106572015 coding downstream 86904 52750213 ~ 52787156 (+)
LOC110532371 LOC106572012 coding downstream 153400 52816709 ~ 52833078 (+)
LOC110532373 LOC106572011 coding downstream 191526 52854835 ~ 52859251 (+)
G817021 NA non-coding upstream 4748 52654659 ~ 52654926 (+)
G817016 NA non-coding upstream 12518 52646934 ~ 52647156 (+)
G816989 NA non-coding upstream 62635 52596812 ~ 52597039 (+)
G816988 NA non-coding upstream 63090 52595984 ~ 52596584 (+)
G816985 NA non-coding upstream 67311 52592050 ~ 52592363 (+)
G817215 NA non-coding downstream 369830 53033139 ~ 53033358 (+)
G817221 NA non-coding downstream 374820 53038129 ~ 53038474 (+)
G817222 NA non-coding downstream 376206 53039515 ~ 53040495 (+)
G817307 NA non-coding downstream 592002 53255311 ~ 53256967 (+)
G817278 NA non-coding downstream 604631 53267940 ~ 53268576 (+)
LOC110532349 LOC106591969 other upstream 334034 52323001 ~ 52325924 (+)
G815767 casz1 other upstream 1313180 51345372 ~ 51346494 (+)
G815610 NA other upstream 1580732 51078447 ~ 51078942 (+)
G815428 NA other upstream 1859293 50796214 ~ 50800381 (+)
G813139 NA other upstream 3544056 49115137 ~ 49115618 (+)
G819897 NA other downstream 2063562 54726871 ~ 54727376 (+)
G820665 NA other downstream 2569949 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 2867728 55531033 ~ 55647541 (+)
G820944 NA other downstream 3034331 55697640 ~ 55697978 (+)

Expression


Co-expression Network