LOC110532371 (LOC106572012)


Basic Information

Item Value
gene id LOC110532371
gene name LOC106572012
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52816709 ~ 52833078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616219.2
CGCGTGCGCAATATGTAAACCACCCACCCGGCCACTATCAATCGATCAGAGAGTGGAAGATGGGGGTAAATCGAGTCTGTGGGGCTAGATCGATCACCGAAAAACTCGATTGAAGGAATTCAACGGATGGTGTTAAAATAGTACAAAACAACACCATAACAAGCGTTTGGAGCGGGAAATTCAGCGATCATCAAGAGGTATTTTGAATGATGGACTTTCCCTGGCACAGTGGCAAGGTTTTGGAACAGCTCAACCGCCAGCGCCAGCTGGGACTGCTGTGTGACTGTACCTTCGTGGTGGACGGGGTGGACTTCAAGGCCCACAAGGCCGTGCTCGCTGCCTGCAGCGCCTACTTCCACACCCTCTTTCTGGACCAGAAGGATGTGGTGCACCTGGACATCAGCAATGCAGCAGGTTTGGGCCAAGTCCTTGAGTTCATGTACACGGCCAAGCTTAGTCTGAGTTCTCAGAATTTGGAAGATGTGGTGGCAGTGGCCACATTCCTTCAGATGCAGGAGATAGTCAATGCCTGCTCTGCTTACCAGTCGCTGGCTGTCTCCACAACATCCCAGTCAATACAAGACTTAaatgacaACAAGATTGAGGAAGGAGAGCAGAACATAGAGAAGGTGCCATCAGAGACATGGTCACATGACGAGGAGATGCTAAAAACAGCAGATGACGGAGGGTCAAAGGGCGTTCAGGAGGACCCGAACGAGACCACCCCAGACGATGGACAGATCAACAGTAAGACCCCCGACAAACCCAACCCACAGACCCCGGGGAGAGGAAGACCCTCCAAAACCTCCAACTACGCCGCACCAAGAAAagccacagcagagagagaggagatggaggtggagagcCCTACTAAAGATGTGCCTGAGTGTCAAGATGACCACTCGGATGTGGACTACACTCCCAAGTTTCCATTCAAGTCTGAAGCCGGTATATCTTACATGAGTACCAGGAGAAGAAGGACAAGGAGAGCTCCTCATCGCAACCACTCTCAGGATAATGACTCCGATGAGGGGAACAGCACATCAAAGACGGTAAATGAAGAAAAAGAGGTTGAAGAGGGTGAGATggatgaggatgaagaagagggaggtggtgaggaggatgaagaagaggaggatgagggagaagaTGGCCAGGGGACGGAGAGCGAAGAGGAGAGGAAGCAGCTCCAGTCGGGTGCCGTCACCGACCGCACCGAGTCACGGTCCTACGGCTCTGTGACGCACAAGTGTGAGGACTGTGGAAAGAAGTTCACCCACACGGGTAACTTCAAAAGACACATCcgcattcacacaggagagaaacctttcaGCTGCCGTGACTGCCACAAGGCCTTCTCCGACCCGGCTGCCTGCAAGGCTCACGAGAAAACACACAGcccCCTGAAACCCTACAGCTGCTCCTCGTGTGGGAAGAGCTACCGGCAGATCAGCCTGCTCAACCTGCACCGGAAAAGGCACACAGGCAAGGCCCGATACAGCTGCAAGGACTGTGGCAAGCTCTTCACCACGTCTGGCAACCTGAAGCGCCACATTCTGGTGCACAGTGGCGAGAAGCCGTATCACTGCAACTACTGCGACCGGGCCTTCTCCGACCCCACCGCTAAGATGCGCCACCTGGAGACCCACGACGCAGACAAGGGCCACAGCTGTCCACACTGCGATAAGCGGTTCAACCAGACTGGGAATCTAAAGGCTCACCTGAAGATCCACATCACAGACGGCCCTCTGAAGTGCAAAGAGTGTGGCAAACAGTTCACCACTTCCGGGAACCTGAAGAGACACCTGCGCGTGCACAGTGGGGAGAAGCCCTATATCTGTATGCACTGCCAGAGAGCTTTCGCTGACCCAGGGGCACTGCAGAGACACGAGCGCATACACACAGGGGAGAAGCCGTGTCTGTGCCGGATCTGTGGGAAGGGGTTCACCCAGGCCAGTTCACTCATTGCTCATGTCCGCCAGCACACCGGAGAGAAGCCCTATGTCTGCGACCGCTGTGGCaaaaggtttgtccagtccagtcaGCTGGCCAATCACATCCGTCACCATGATAACATCCGGCCACACAAGTGTCACAACTGCAAAAAGGCGTTTGTCAACGTCGGGGACCTCTCCAAGCATATCATCATTCACACAGGAGAGAAGCCCTTCCTGTGTGACAAGTGCGGTCGCGGGTTCAATCGTGTCGACAATCTACGCTCCCACGTCAAGACCGTCCACCAGGGTAAGGCTGGGATGAAGCGCCTGGTGGTTGCCGGGGGTGACAGTGATGACGGGGGTGACGGGTTCCATGGCGGGTCGGCCTCGGAGATGGACGAAAATGAGATCAACATAGTCACTGTCACCACCGAGGACATCGTCACCCTGGCGACGGAGGCCCTGGCTGGCAGCACTGTGTCCCAGCTGACAGTGGTGCCTGTGGCTGCATCAGTGTCAGCAGATGAGACGGAGGCTCTGAAAGCTGAGATTGCGAAGGCTGTGGAGAAGGTGCAGGAAGCAGaccCCAACACTCAGATCCTGTATGCATGCGACTCTTGCGGTGACAAGTTCCTGGACGCCAGCTCACTGGCCCAACATGTGCGAATCCACACCGCCCAGGCCCTGGTCATGTTCCAAGCTGACTCTGACTTCTACCATCAGTACACTGTAGCTGCCACCACCGTGGGGGAAGATGTTACCACAACCTGGCAACCCACTTCCGAGCAGATTATCCAGGGAGGGGAGCTCGTCTTCCACACCCGAGAGGTTGAGGCGGAAGGGGATGAGGTGActcaggaggagggaggagaggtggtggcCCAAGCTGACCCCCAgccagaggaggaagatgaggttgTGACAGAAGAAGGacaaggagaagagatggagtgtGGAATGTGCAGTGATGTGGCACTCAAGAATAAGAATAAAATGCAAAGCAGTCAAGTtcttactggggtctgacaatACCTCATACGAAGCTGCCAGTCTCTGGGTCTCTCTGAGTCTCTGCATCAGTGACATGAACATCTGTGTCCAAAGTTTGGGAAGAAACCGTTTGGCTTGTTTTTTGGACATTGTATAAagtaaaattatataaaaaaagaagaaaaacacaTTGCTATAGGCCTATCTGTGTGTTTTACCATTACCTTGAAAATAAATATGTGTTTAGAGTTAAATAA
>XM_021616220.2
GCGTGCGCAATATGTAAACCACCCACCCGGCCACTATCAATCGATCAGAGAGTGGAAGATGGGGGTAAATCGAGTCTGTGGGGCTAGATCGATCACCGAAAAACTCGATTGAAGGAATTCAACGGATGGTGTTAAAATAGTACAAAACAACACCATAACAAGCGTTTGGAGCGGGAAATTCAGCGATCATCAAGAGGATGGACTTTCCCTGGCACAGTGGCAAGGTTTTGGAACAGCTCAACCGCCAGCGCCAGCTGGGACTGCTGTGTGACTGTACCTTCGTGGTGGACGGGGTGGACTTCAAGGCCCACAAGGCCGTGCTCGCTGCCTGCAGCGCCTACTTCCACACCCTCTTTCTGGACCAGAAGGATGTGGTGCACCTGGACATCAGCAATGCAGCAGGTTTGGGCCAAGTCCTTGAGTTCATGTACACGGCCAAGCTTAGTCTGAGTTCTCAGAATTTGGAAGATGTGGTGGCAGTGGCCACATTCCTTCAGATGCAGGAGATAGTCAATGCCTGCTCTGCTTACCAGTCGCTGGCTGTCTCCACAACATCCCAGTCAATACAAGACTTAaatgacaACAAGATTGAGGAAGGAGAGCAGAACATAGAGAAGGTGCCATCAGAGACATGGTCACATGACGAGGAGATGCTAAAAACAGCAGATGACGGAGGGTCAAAGGGCGTTCAGGAGGACCCGAACGAGACCACCCCAGACGATGGACAGATCAACAGTAAGACCCCCGACAAACCCAACCCACAGACCCCGGGGAGAGGAAGACCCTCCAAAACCTCCAACTACGCCGCACCAAGAAAagccacagcagagagagaggagatggaggtggagagcCCTACTAAAGATGTGCCTGAGTGTCAAGATGACCACTCGGATGTGGACTACACTCCCAAGTTTCCATTCAAGTCTGAAGCCGGTATATCTTACATGAGTACCAGGAGAAGAAGGACAAGGAGAGCTCCTCATCGCAACCACTCTCAGGATAATGACTCCGATGAGGGGAACAGCACATCAAAGACGGTAAATGAAGAAAAAGAGGTTGAAGAGGGTGAGATggatgaggatgaagaagagggaggtggtgaggaggatgaagaagaggaggatgagggagaagaTGGCCAGGGGACGGAGAGCGAAGAGGAGAGGAAGCAGCTCCAGTCGGGTGCCGTCACCGACCGCACCGAGTCACGGTCCTACGGCTCTGTGACGCACAAGTGTGAGGACTGTGGAAAGAAGTTCACCCACACGGGTAACTTCAAAAGACACATCcgcattcacacaggagagaaacctttcaGCTGCCGTGACTGCCACAAGGCCTTCTCCGACCCGGCTGCCTGCAAGGCTCACGAGAAAACACACAGcccCCTGAAACCCTACAGCTGCTCCTCGTGTGGGAAGAGCTACCGGCAGATCAGCCTGCTCAACCTGCACCGGAAAAGGCACACAGGCAAGGCCCGATACAGCTGCAAGGACTGTGGCAAGCTCTTCACCACGTCTGGCAACCTGAAGCGCCACATTCTGGTGCACAGTGGCGAGAAGCCGTATCACTGCAACTACTGCGACCGGGCCTTCTCCGACCCCACCGCTAAGATGCGCCACCTGGAGACCCACGACGCAGACAAGGGCCACAGCTGTCCACACTGCGATAAGCGGTTCAACCAGACTGGGAATCTAAAGGCTCACCTGAAGATCCACATCACAGACGGCCCTCTGAAGTGCAAAGAGTGTGGCAAACAGTTCACCACTTCCGGGAACCTGAAGAGACACCTGCGCGTGCACAGTGGGGAGAAGCCCTATATCTGTATGCACTGCCAGAGAGCTTTCGCTGACCCAGGGGCACTGCAGAGACACGAGCGCATACACACAGGGGAGAAGCCGTGTCTGTGCCGGATCTGTGGGAAGGGGTTCACCCAGGCCAGTTCACTCATTGCTCATGTCCGCCAGCACACCGGAGAGAAGCCCTATGTCTGCGACCGCTGTGGCaaaaggtttgtccagtccagtcaGCTGGCCAATCACATCCGTCACCATGATAACATCCGGCCACACAAGTGTCACAACTGCAAAAAGGCGTTTGTCAACGTCGGGGACCTCTCCAAGCATATCATCATTCACACAGGAGAGAAGCCCTTCCTGTGTGACAAGTGCGGTCGCGGGTTCAATCGTGTCGACAATCTACGCTCCCACGTCAAGACCGTCCACCAGGGTAAGGCTGGGATGAAGCGCCTGGTGGTTGCCGGGGGTGACAGTGATGACGGGGGTGACGGGTTCCATGGCGGGTCGGCCTCGGAGATGGACGAAAATGAGATCAACATAGTCACTGTCACCACCGAGGACATCGTCACCCTGGCGACGGAGGCCCTGGCTGGCAGCACTGTGTCCCAGCTGACAGTGGTGCCTGTGGCTGCATCAGTGTCAGCAGATGAGACGGAGGCTCTGAAAGCTGAGATTGCGAAGGCTGTGGAGAAGGTGCAGGAAGCAGaccCCAACACTCAGATCCTGTATGCATGCGACTCTTGCGGTGACAAGTTCCTGGACGCCAGCTCACTGGCCCAACATGTGCGAATCCACACCGCCCAGGCCCTGGTCATGTTCCAAGCTGACTCTGACTTCTACCATCAGTACACTGTAGCTGCCACCACCGTGGGGGAAGATGTTACCACAACCTGGCAACCCACTTCCGAGCAGATTATCCAGGGAGGGGAGCTCGTCTTCCACACCCGAGAGGTTGAGGCGGAAGGGGATGAGGTGActcaggaggagggaggagaggtggtggcCCAAGCTGACCCCCAgccagaggaggaagatgaggttgTGACAGAAGAAGGacaaggagaagagatggagtgtGGAATGTGCAGTGATGTGGCACTCAAGAATAAGAATAAAATGCAAAGCAGTCAAGTtcttactggggtctgacaatACCTCATACGAAGCTGCCAGTCTCTGGGTCTCTCTGAGTCTCTGCATCAGTGACATGAACATCTGTGTCCAAAGTTTGGGAAGAAACCGTTTGGCTTGTTTTTTGGACATTGTATAAagtaaaattatataaaaaaagaagaaaaacacaTTGCTATAGGCCTATCTGTGTGTTTTACCATTACCTTGAAAATAAATATGTGTTTAGAGTTAAATAA

Function

NR:

description
zinc finger and BTB domain-containing protein 17-like isoform X2

GO: NA

KEGG:

id description
K10500 ZBTB17, MIZ1; zinc finger and BTB domain-containing protein 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616219.2 False 3184 mRNA 0.54 15 52816709 52833078
XM_021616220.2 True 3172 mRNA 0.54 15 52816710 52833078

Neighbor

gene id symbol gene type direction distance location
LOC110532370 LOC106572015 coding upstream 29553 52750213 ~ 52787156 (+)
LOC110532368 LOC106572016 coding upstream 81780 52692676 ~ 52734929 (+)
LOC110531201 NA coding upstream 132507 52681511 ~ 52684202 (+)
LOC110532366 NA coding upstream 153400 52659674 ~ 52663309 (+)
LOC110532365 LOC106572021 coding upstream 195629 52606443 ~ 52621080 (+)
LOC110532373 LOC106572011 coding downstream 21757 52854835 ~ 52859251 (+)
LOC110532374 LOC106572009 coding downstream 26538 52859616 ~ 52912527 (+)
ano11 LOC106572008 coding downstream 91321 52924399 ~ 52956952 (+)
LOC110532377 LOC106572006 coding downstream 123962 52957040 ~ 52990201 (+)
trnaa-ugc-36 NA coding downstream 160785 52993863 ~ 52993938 (+)
G817021 NA non-coding upstream 161783 52654659 ~ 52654926 (+)
G817016 NA non-coding upstream 169553 52646934 ~ 52647156 (+)
G816989 NA non-coding upstream 219670 52596812 ~ 52597039 (+)
G816988 NA non-coding upstream 220125 52595984 ~ 52596584 (+)
G817215 NA non-coding downstream 200061 53033139 ~ 53033358 (+)
G817221 NA non-coding downstream 205051 53038129 ~ 53038474 (+)
G817222 NA non-coding downstream 206437 53039515 ~ 53040495 (+)
G817307 NA non-coding downstream 422233 53255311 ~ 53256967 (+)
G817278 NA non-coding downstream 434862 53267940 ~ 53268576 (+)
LOC110532349 LOC106591969 other upstream 491069 52323001 ~ 52325924 (+)
G815767 casz1 other upstream 1470215 51345372 ~ 51346494 (+)
G815610 NA other upstream 1737767 51078447 ~ 51078942 (+)
G815428 NA other upstream 2016328 50796214 ~ 50800381 (+)
G819897 NA other downstream 1893793 54726871 ~ 54727376 (+)
G820665 NA other downstream 2400180 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 2697959 55531033 ~ 55647541 (+)
G820944 NA other downstream 2864562 55697640 ~ 55697978 (+)
G821363 uhrf1bp1 other downstream 3140964 55974042 ~ 55975316 (+)

Expression


Co-expression Network