LOC110532373 (LOC106572011)


Basic Information

Item Value
gene id LOC110532373
gene name LOC106572011
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52854835 ~ 52859251 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616222.2
GTACACAttttaaaaagaagaagaagaacgcTGACGTCGACTTCTTCTCCAAAATGGCGAAGTGGACCTCAGACAAGCAAATTAATTGGTGCAGTTCTACTTTGTTGTTAAAAAAACGCACTGTAAGCATGGGTCAGACAAAATCCAGATTGTTGGgaaacaattttattttattcttgATGATATCGTCCATGATGCACATGGCATTGGCTGACGGAAAGACGCTCGTTTTGTTGGACAACCTCAACATCAGAGATACCCATGCAATCTTCTTCCGCAGTCTGGCAGATCGTGGCTTTGACCTTTCATTCAAGACTGCAGATGATCCTTCTCTTTCCCTGATCAAATATGGCCAATTTCTCTATGACCACCTCATCATCTTCTCCCCATCCGTGGAAGACTTTGGTGGCAACATCAGTGTTGAGACAATCACTTCCTTTATCGATGGTGGAGGCAATGTCCTGGTTGCTGCAAGCTCTGATATTGGTGACCCTCTGAGAGAGATAGGCAGTGAATGTGGAATTGAGTTTGATGAGGAGAAGACTGCTGTCATTGATCATCACCATTACGATGTGTCAGACCCTGGTGAGCATACCCTGATTGTTGCTGATCCAGACAATCTTCTGAAGGCTCCCACTATTGTCGGGAACCCCAGTGACAAACCCATCCTCTTCAAGGGTGTTGGCATGGTGGCAGACCCAGATAACCCCCTGGTCCTGGACATTCTGACTggctcctccacctcctactcctaCTTCCCTGACCGACCCATCTCTCAGTACCCCCATGCTGTTGGAAAGAACACTCTTTTGATCGCTGGGCTCCAGGCCAGGAATAACGCCCGAGTGGTATTCAGTGGCTCACTGCACTTTTTCAGCGACGCCTTCTTCAACGCTGCTGTTCAGAAGGCCACACCTGGCTCCCAGAGGTACGCTCAGACTGGGAACATGGAATTAGCCGAGGCTCTGTCCCGATGGGTGTTCAAGGAAGCCGGTGTACTCCGAGTGGGAGCCGTTACACATCATCCTGTGGGGGAGAGCACCCCTCCTGCAGCTTACACCATCACAGACCTTGTGGAGTACAGCGTTGTAATTGAGATGCTGTCCGAGGGCAGCTGGATTCCGTTTGATGGGGAAGACATCCAGTTGGAGTTTGTGAGAATCGACCCCTTCGTCAGGACCTACCTCAAGAAAAATGGAGATAAATACAGCGTCCAGTTCAAGTTGCCTGACGTGTATGGAGTTTTCCAGTTCAAGGTGGACTACAACAGGCTAGGCTACACACACCTGTACTCCTCTACTCAGGTGTCGGTGCGTCCTCTGCAGCACACGCAGTATGAGCGCTTCATCCCCTCAGCATTCCCTTATTACGCCAGTGTCTTCTCCATGATGGGAGGACTCTTTGTCTTCAGCATAGTCTTCCTTCACATGAAAGAAAAGGAGAAATCAGACTAGGGAGATGAAACGTTTCCAGAAAAGCTTATTAAATTaggagggaggggtggtagaTTAAGAATTTGCCTTATTGGGGTGAAGGTTCTTGGTTGCTTAAATCATCTGGCAGAGTCTGCAAGAAGAGTTGGTGAGAATTGAACATGTTGCTTCTCTATTGGTTGTGGGGGAATTTAATGAGGGCTTTGCAGGCAAACTGAGATTTTTTGTAATTCTGAAAATAATACACTTGTGCACAGATAATTTGAGTGATTTATTTTACACATCTCTGAATTCAGTCAGCAATTGGATATGGTTGCTTCACGATCTCAATAACAGATGGAACACTTGTTTGGAAAAATCCCATGAATGTATGTTTTTCCCACCCCCTTGTATGAGGATAAAAACGTCTTGATGCAGTACATGCACtgaatatttttgttttgtctgaTCAAATAGTCTTGCCAATAGAAACACTAACATGTTTGCAACAAACGTTACATAAATCCTTAAACTACAATAAAATGTTGACATTCCACTCTG

Function

NR:

description
dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit

GO: NA

KEGG:

id description
K12670 WBP1; oligosaccharyltransferase complex subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616222.2 True 1973 mRNA 0.46 11 52854835 52859251

Neighbor

gene id symbol gene type direction distance location
LOC110532371 LOC106572012 coding upstream 21757 52816709 ~ 52833078 (+)
LOC110532370 LOC106572015 coding upstream 67679 52750213 ~ 52787156 (+)
LOC110532368 LOC106572016 coding upstream 119906 52692676 ~ 52734929 (+)
LOC110531201 NA coding upstream 170633 52681511 ~ 52684202 (+)
LOC110532366 NA coding upstream 191526 52659674 ~ 52663309 (+)
LOC110532374 LOC106572009 coding downstream 365 52859616 ~ 52912527 (+)
ano11 LOC106572008 coding downstream 65148 52924399 ~ 52956952 (+)
LOC110532377 LOC106572006 coding downstream 97789 52957040 ~ 52990201 (+)
trnaa-ugc-36 NA coding downstream 134612 52993863 ~ 52993938 (+)
LOC110532379 LOC106572005 coding downstream 183826 53043077 ~ 53121864 (+)
G817021 NA non-coding upstream 199909 52654659 ~ 52654926 (+)
G817016 NA non-coding upstream 207679 52646934 ~ 52647156 (+)
G816989 NA non-coding upstream 257796 52596812 ~ 52597039 (+)
G816988 NA non-coding upstream 258251 52595984 ~ 52596584 (+)
G817215 NA non-coding downstream 173888 53033139 ~ 53033358 (+)
G817221 NA non-coding downstream 178878 53038129 ~ 53038474 (+)
G817222 NA non-coding downstream 180264 53039515 ~ 53040495 (+)
G817307 NA non-coding downstream 396060 53255311 ~ 53256967 (+)
G817278 NA non-coding downstream 408689 53267940 ~ 53268576 (+)
LOC110532349 LOC106591969 other upstream 529195 52323001 ~ 52325924 (+)
G815767 casz1 other upstream 1508341 51345372 ~ 51346494 (+)
G815610 NA other upstream 1775893 51078447 ~ 51078942 (+)
G815428 NA other upstream 2054454 50796214 ~ 50800381 (+)
G819897 NA other downstream 1867620 54726871 ~ 54727376 (+)
G820665 NA other downstream 2374007 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 2671786 55531033 ~ 55647541 (+)
G820944 NA other downstream 2838389 55697640 ~ 55697978 (+)
G821363 uhrf1bp1 other downstream 3114791 55974042 ~ 55975316 (+)

Expression


Co-expression Network