LOC110532377 (LOC106572006)


Basic Information

Item Value
gene id LOC110532377
gene name LOC106572006
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52957040 ~ 52990201 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616228.2
gctcatcctatataactactgctgtacacacatttatattcacatactgtccataatgtctatacacatCATTCACAGACACATATACAGTATTATTTATATTCTGGACTCATTTCtggaagctaatttcctgcaattctatcaaTTTTCCTACGTGTTTTTGTACTGTGTACTTACAGTACATATTGTATTCTTGACATAGCTCATTGTAGTATTTATACTATTGTACATTGAATTTTAGttacactgtttatacacaccacatatttatttatatgttgTATTCTTGACATAGGTCACACTAATATTTCTACTGCTCTATATATAATTTCTAGTATATCTTTTGTAAATTCATCCAATGTATACACTGTACTtatagattgcatttggattactgttacagtgctatttTCGTTGTTAATTGGATTCGTTCCGACATTTCTTGATTTCTTCTTGTTCTTTCCGTTTTTTTTGGTTTTTGAAATGAATTATTTGTGTACCTGTTTGATATTTCACTGCATTGTTAGGTGCTactaacataagcatttcactgcacccgcTACAACATCTGCTTGGTTGGATGAATTTGACATTTTTGATCCTccaaatacattttcaaagtGCTAGATACTGCCGTTGTCAAATAAAATCTCAAATATGTTCTCAAATTTCGAAATGCCGAAGAACTTATCTTACCAAAAaatctcctcctcccttcctccccactcGCTCGGAAACATGACCCCCTCAGAAAATGAGAAATCCAGACAGATGAAACCCCTCTGATTTAttaggagtcagagagagacaggtgttcTGTTAAtgatttctctccctcctttccctcttctCCTACGCACCCTTCCAAAATATTCCTATTGCCTTgggcaactctctctctctctcgccctgtctcttttctctctctctcgccctctctctctactgctgtaGCGTTCATGTTTTGATTGTTATGATTGCTGTGAGTGTGTTCCTTTGCCATTCAGCCTGCAGGAAGTGTGCGCTAGTACATGTCAACTAGTGGAGGCAGGTATGCAACGTGGACAGGGCCTCCAACAGAcactgtgtgtgtcccaaatggcaccatattctatatactgtagtacactacactacttGTCAAAAGTCATGCATGATGTAGGCAAtaaggtgccatttaggacagagACACTGTACTAATAGTTCTCCCCTTATACCTCAACACCACACTTAACAGAGCAGGGAAGCACTCAAAGGCAGGGAGTGAGAACCCATAACACCACCCAATGGTATTCAGTTGAtgtgttgattgaaaagtgtcaACTTGTCATTTATCCACAAACAAGTTGCCATTGTAAGATTGAATGTACAATATTGAGTAGTTATGAAAGCACATCAACTGCCAACTAGAGACAGAATTTATATGATTGATTTCTGGATAATTGTTAGACATCATGAAAATAAAACTCAGAAAGTCAACTTCAAAACACATCAGTGTTAactgttgttttttaaatgtttaattacGGAGTTACAGTGCTAGAGAGGTAGAAGCCAAGGAGTTCAAGCATGTCTTGCAGATACTTTCTTTCTGCAAACTGATATTTTTCTACCTacttaattacacacacacacacacacacacacacacacacacacatgcctgagCACACACACTGTCTACTTCCCACCCCTTTCCCCCTCCTACCTGCCTGCTATCCACTTGCAGTACATTTTTGTTGACACACGAGAATCCGAcccatgcatgcatgcatgcacacacacacacacacacacacacacacacacacacacacacagacacactctcacacatactCACAGAGAGGAAATATTTTTCACTCACGCAGATGGCTGCTagctcactcctctctccctctctttctataagCAGGTGTTAATATGCAACACTAAACTATTATAGACcaacaaagagagaggagagggaggatagaaagAATAGGAGAGAGTGCACTACCCCAACAgtagcagagggagagaaagagagcgagaaggattgtgagcaaggagagggagagcaaaAGCTTAAAGAGGGATCTGCATGGTAAGTAGCCAGAAGAGCGAAcacttaaaacattttttttaaacagctttttggtggagaaggagaagagggataCAACGGAGGAGTCTGGACCCTGTCGACCAGTTCACTTGCCTGGGCACACTGGTCTTCAGACGAGTGGAGTAAAAAGTGAAGGAAAACGACTGAAGGGAAAGAAGCCGGGAGGAACACAAGGCAGTCATGGATAGCACATAGAGGCTCAGCCAGACGCTAGGATGGCCTGGATTCTCACACTGTCGCTGGCAACCGTCCAGCACAGAAGCTAAAGATACTCATGAGCTCTCATGTGTTCTCTCAGTCATGCTTCCTGGGTATGGATTCTTCCCTCTCCCTGACTTCCAGCCTCATCTACACGCCTTCCGTTTCCGAGGAAAGAGCCCCATTATGTGGATCCCTGTCTCAGGTGAGTCCCAGGCTTTGAGCGAGGCCCCGGACGACATGCCTCTCCTCCGGCAGTGCCACCACAAGCACATCGCTGTGTGTCAGCAGGAGACTCTGACCTTCATCGAGCTGCAGCCGCCTGTGACACCCAGCGTCAAAGGCTGGGGCTCCCCAACTGCAGACACTCAACGCTTCAGCCAGTTGTCTCTGAATCATCCTAAACACAGGAGTGAAGCACAAATTGGCAGTGGGAGAAGTGATTATTACACTGATTCTAATACGGACCTGAGTTTAGACTCTCCGACGCTAGGGGGCGAGGTTGAGCTGGTTATCCAGGAAGATATCAGGACCAACCCTCCAGTGCAGGAGCAGTATGAGAGACCCATGACGGTGTCATCTGTGTTTCTTCCCCTCCACGCAGCCCTCAGCCtgcccctgtccctccctctgtcctccctgtaCAGAGACACAGACTCCTGGgactctcagccacctggctctccatcctctcctgagCTTCCGTGGCTGCAGAGCCCAGATACCTGTCGACCCCAGAGGAGATCATCACAGAGCTCCCTCAGGGAAAAGTCCATCCGGCGTAAGGTGCGGGTGTACTCACCAGACAGCCTAAGTGACGAGTCTCTGGCCAGCCCCATTCTGGACGGCGACTACCTTTTCCCAGGACCCTTTGACTTCTTTCTGGAAGAGGACCTCAGGGGAGACCCTGAAGACGCCACGAGTCCCTCATCAACAGGGGGTGCCGTAGACCCCCAAAACCCCAACCCTCCAAAGATTCCACCTCTGTCCTCAGAGCCACATCAGTCGTCAGAGGACTCCTCTGTCTTGAACTCTGGGGCTGTAGAGAATTCCTCGGCCACCGGGGGGAGCACTTTAGCCTGCTCTCGTATGGTGGAGCACGAGCGGCGGCGCTTCTCTGCCTCTGAGCTGATCTCACGGCTGCAGCTGTCCCAGAGGAAGAACTCGTTCACGCTAAAGCTAGGCAAGTCGCTGTCGGCTCGCGTGGCTTCCCGTGACAGGCAGACCTCCAGCAACCTCAGCCCCAGCTCTGACTATAATTCCACTTCCAGGCACTGTGGCTCAGGTGGTTCCAGTCACAGCGCCCCCCACAGTCCTGTAGGACCTGTACCGCCACTACCTACTGCTGACAATAACACGCAACAACATCGACGGAGCACTGGATTCGCAATCAAAAATATAAGGAAGAAATCCATCGAGGAGGATTGGTTTACTCCTCCCACAGTCAGCAGCTCCAATCGTCTGTCACGGTTTCTCCCCAGCTcAATTCTGTACCAGGAGTACAGTGATGTTGCAATCAACCGAGAAATCCAGAGGCAGCAGGGGGAGGAGCCAGGTGCTGAGGAGGAGAGGCTAGGGGTAGAAGGGGCTGGGGAGGCCCCATCTCCGTCCAATCTGTCTCCGTCTAGCTCCTTTTGCTCGTCACGAGGCTCCGCCTTCTCCCTGTGGCAGGACATTCCTGATGTCCAGACCAGCGATCAGCTGGACAACTTCAGCAACGAGGAGCGCAAACTACAGGAGGCCAAGTTTGAGCTAGTGACATCTGAGGCGTCGTACATCCGGAGCCTGGCCATCGCGGTGGACCACTTTATGCTGTCCCAAGAGCTGGGGGAGTGTCTGGGGACCCAGGACAGACAGTGGCTCTTCTCCAAGCTCCCCGAGGTCAAGGACGTCAGTGAGCGGTTCCTGCAGGACCTGGAGCACAGGTTGGAGGAGGACATCTTGCGTTTTGACGTATGCGACATCGTCCTGGCCCACTGTCCCGCCCTGCGAAGGGTCTACCTCCCTTACGTGACCAACCAGGCCTACCAGGAACAGACCTACCAGCGCCTGTTACAGGAGAATGCTCGCTTCCCAGGTATCCTGGCTCGTTTGGAGGAAGACCCCATCTGCCAGCGTCTTCCCCTTGCCTCCTTCCTCATCCTCCCCTTCCAGAGGATCACACGGCTTAAGATGCTGGTGGAAAATATTCTGAAGAGGACAACACCAGGCTCTAGGGGTGAAGACACAGCCACCAAGGCCTTCAATGAACTGAAAAAGCTTATAAAGGAGTGTAACTCCAGTGTGCAATCAATGAAGAGGATGGAAGAGCTCATTCACCTCAATAAGAAGATCCACTTTGAGGGCAAGATATTCCCTCTGATCTCCCAGTCTCGCTGGCTGGTCAAACACGGGGAACTGCTGGAGGTGGACACACAGACCATGAGTATTTCTGGGTCAAAGTTCAAGTTGCCCACAAGGCCTGTTTATCTGCATCTGTTCAATGACTGTCTTCTGCTGTCCAGGAGGAAAGACACGTGGAAGTTCATGGTGTTTGTTCACGCTAAGATTGGGCAGCTGAAGGTGAAGGACCTCAGTCAGAAGCTCCAGGGCATCTCAGGCTTCATCTTCCACCTCCAGCTGTGTGAGGGCCAGCAGCTCAAACACCAGATCCTGCTCAAGGCCCACACTGAGAGTGGGAAACAAAGATGGATCACAGCCATGTTCCCCTCTGATCCATTGGAAGACATTGAGCAGGCCAGTGAGAATGATGATCTTTCTCAAGTTCAGTGCATCAAGAGCTACCAGGCCCAAGAGCATGACGAGCTAACATTGGAGAAGGCTGATATTCTTCAAGCCAAGACCATTACAAGTGACGGCTGGGTGGAGGGCATTCGGCTGTCAGATGGGGAGCGGGGCTGGTTCCCCAAAACCAATGTAGAGGAGATCACAAATCGCAGTGCGCGTCTCCGCAACCTCAGAGAAAACATCCGCATCAAGTGTGTCACACAGAAACTGGAGGAGGAGCTCTTTTAAGTGTCCTCTCCACCCTGCGGCTTTTAACTTACACTTGGAATGTCCAATCGTAATGGTGTAATAACTCTCAACCCCAAACATCTATAAGTCCCAGCTTTTACGCAACACCAGTTA
>XM_021616229.2
tcatcctatataactactgctgtacacacatttatattcacatactgtccataatgtctatacacatCATTCACAGACACATATACAGTATTATTTATATTCTGGACTCATTTCtggaagctaatttcctgcaattctatcaaTTTTCCTACGTGTTTTTGTACTGTGTACTTACAGTACATATTGTATTCTTGACATAGCTCATTGTAGTATTTATACTATTGTACATTGAATTTTAGttacactgtttatacacaccacatatttatttatatgttgTATTCTTGACATAGGTCACACTAATATTTCTACTGCTCTATATATAATTTCTAGTATATCTTTTGTAAATTCATCCAATGTATACACTGTACTtatagattgcatttggattactgttacagtgctatttTCGTTGTTAATTGGATTCGTTCCGACATTTCTTGATTTCTTCTTGTTCTTTCCGTTTTTTTTGGTTTTTGAAATGAATTATTTGTGTACCTGTTTGATATTTCACTGCATTGTTAGGTGCTactaacataagcatttcactgcacccgcTACAACATCTGCTTGGTTGGATGAATTTGACATTTTTGATCCTccaaatacattttcaaagtGCTAGATACTGCCGTTGTCAAATAAAATCTCAAATATGTTCTCAAATTTCGAAATGCCGAAGAACTTATCTTACCAAAAaatctcctcctcccttcctccccactcGCTCGGAAACATGACCCCCTCAGAAAATGAGAAATCCAGACAGATGAAACCCCTCTGATTTAttaggagtcagagagagacaggtgttcTGTTAAtgatttctctccctcctttccctcttctCCTACGCACCCTTCCAAAATATTCCTATTGCCTTgggcaactctctctctctctcgccctgtctcttttctctctctctcgccctctctctctactgctgtaGCGTTCATGTTTTGATTGTTATGATTGCTGTGAGTGTGTTCCTTTGCCATTCAGCCTGCAGGAAGTGTGCGCTAGTACATGTCAACTAGTGGAGGCAGGTATGCAACGTGGACAGGGCCTCCAACAGAcactgtgtgtgtcccaaatggcaccatattctatatactgtagtacactacactacttGTCAAAAGTCATGCATGATGTAGGCAAtaaggtgccatttaggacagagACACTGTACTAATAGTTCTCCCCTTATACCTCAACACCACACTTAACAGAGCAGGGAAGCACTCAAAGGCAGGGAGTGAGAACCCATAACACCACCCAATGGTATTCAGTTGAtgtgttgattgaaaagtgtcaACTTGTCATTTATCCACAAACAAGTTGCCATTGTAAGATTGAATGTACAATATTGAGTAGTTATGAAAGCACATCAACTGCCAACTAGAGACAGAATTTATATGATTGATTTCTGGATAATTGTTAGACATCATGAAAATAAAACTCAGAAAGTCAACTTCAAAACACATCAGTGTTAactgttgttttttaaatgtttaattacGGAGTTACAGTGCTAGAGAGGTAGAAGCCAAGGAGTTCAAGCATGTCTTGCAGATACTTTCTTTCTGCAAACTGATATTTTTCTACCTacttaattacacacacacacacacacacacacacacacacacacatgcctgagCACACACACTGTCTACTTCCCACCCCTTTCCCCCTCCTACCTGCCTGCTATCCACTTGCAGTACATTTTTGTTGACACACGAGAATCCGAcccatgcatgcatgcatgcacacacacacacacacacacacacacacacacacacacacacagacacactctcacacatactCACAGAGAGGAAATATTTTTCACTCACGCAGATGGCTGCTagctcactcctctctccctctctttctataagCAGGTGTTAATATGCAACACTAAACTATTATAGACcaacaaagagagaggagagggaggatagaaagAATAGGAGAGAGTGCACTACCCCAACAgtagcagagggagagaaagagagcgagaaggattgtgagcaaggagagggagagcaaaAGCTTAAAGAGGGATCTGCATGGTAAGTAGCCAGAAGAGCGAAcacttaaaacattttttttaaacagctttttggtggagaaggagaagagggataCAACGGAGGAGTCTGGACCCTGTCGACCAGTTCACTTGCCTGGGCACACTGGTCTTCAGACGAGTGGAGTAAAAAGTGAAGGAAAACGACTGAAGGGAAAGAAGCCGGGAGGAACACAAGGCAGTCATGGATAGCACATAGAGGCTCAGCCAGACGCTAGGATGGCCTGGATTCTCACACTGTCGCTGGCAACCGTCCAGCACAGAAGCTAAAGATACTCATGAGCTCTCATGTGTTCTCTCAGTCATGCTTCCTGGGTATGGATTCTTCCCTCTCCCTGACTTCCAGCCTCATCTACACGCCTTCCGTTTCCGAGGAAAGAGCCCCATTATGTGGATCCCTGTCTCAGCCCTCAGCCtgcccctgtccctccctctgtcctccctgtaCAGAGACACAGACTCCTGGgactctcagccacctggctctccatcctctcctgagCTTCCGTGGCTGCAGAGCCCAGATACCTGTCGACCCCAGAGGAGATCATCACAGAGCTCCCTCAGGGAAAAGTCCATCCGGCGTAAGGTGCGGGTGTACTCACCAGACAGCCTAAGTGACGAGTCTCTGGCCAGCCCCATTCTGGACGGCGACTACCTTTTCCCAGGACCCTTTGACTTCTTTCTGGAAGAGGACCTCAGGGGAGACCCTGAAGACGCCACGAGTCCCTCATCAACAGGGGGTGCCGTAGACCCCCAAAACCCCAACCCTCCAAAGATTCCACCTCTGTCCTCAGAGCCACATCAGTCGTCAGAGGACTCCTCTGTCTTGAACTCTGGGGCTGTAGAGAATTCCTCGGCCACCGGGGGGAGCACTTTAGCCTGCTCTCGTATGGTGGAGCACGAGCGGCGGCGCTTCTCTGCCTCTGAGCTGATCTCACGGCTGCAGCTGTCCCAGAGGAAGAACTCGTTCACGCTAAAGCTAGGCAAGTCGCTGTCGGCTCGCGTGGCTTCCCGTGACAGGCAGACCTCCAGCAACCTCAGCCCCAGCTCTGACTATAATTCCACTTCCAGGCACTGTGGCTCAGGTGGTTCCAGTCACAGCGCCCCCCACAGTCCTGTAGGACCTGTACCGCCACTACCTACTGCTGACAATAACACGCAACAACATCGACGGAGCACTGGATTCGCAATCAAAAATATAAGGAAGAAATCCATCGAGGAGGATTGGTTTACTCCTCCCACAGTCAGCAGCTCCAATCGTCTGTCACGGTTTCTCCCCAGCTcAATTCTGTACCAGGAGTACAGTGATGTTGCAATCAACCGAGAAATCCAGAGGCAGCAGGGGGAGGAGCCAGGTGCTGAGGAGGAGAGGCTAGGGGTAGAAGGGGCTGGGGAGGCCCCATCTCCGTCCAATCTGTCTCCGTCTAGCTCCTTTTGCTCGTCACGAGGCTCCGCCTTCTCCCTGTGGCAGGACATTCCTGATGTCCAGACCAGCGATCAGCTGGACAACTTCAGCAACGAGGAGCGCAAACTACAGGAGGCCAAGTTTGAGCTAGTGACATCTGAGGCGTCGTACATCCGGAGCCTGGCCATCGCGGTGGACCACTTTATGCTGTCCCAAGAGCTGGGGGAGTGTCTGGGGACCCAGGACAGACAGTGGCTCTTCTCCAAGCTCCCCGAGGTCAAGGACGTCAGTGAGCGGTTCCTGCAGGACCTGGAGCACAGGTTGGAGGAGGACATCTTGCGTTTTGACGTATGCGACATCGTCCTGGCCCACTGTCCCGCCCTGCGAAGGGTCTACCTCCCTTACGTGACCAACCAGGCCTACCAGGAACAGACCTACCAGCGCCTGTTACAGGAGAATGCTCGCTTCCCAGGTATCCTGGCTCGTTTGGAGGAAGACCCCATCTGCCAGCGTCTTCCCCTTGCCTCCTTCCTCATCCTCCCCTTCCAGAGGATCACACGGCTTAAGATGCTGGTGGAAAATATTCTGAAGAGGACAACACCAGGCTCTAGGGGTGAAGACACAGCCACCAAGGCCTTCAATGAACTGAAAAAGCTTATAAAGGAGTGTAACTCCAGTGTGCAATCAATGAAGAGGATGGAAGAGCTCATTCACCTCAATAAGAAGATCCACTTTGAGGGCAAGATATTCCCTCTGATCTCCCAGTCTCGCTGGCTGGTCAAACACGGGGAACTGCTGGAGGTGGACACACAGACCATGAGTATTTCTGGGTCAAAGTTCAAGTTGCCCACAAGGCCTGTTTATCTGCATCTGTTCAATGACTGTCTTCTGCTGTCCAGGAGGAAAGACACGTGGAAGTTCATGGTGTTTGTTCACGCTAAGATTGGGCAGCTGAAGGTGAAGGACCTCAGTCAGAAGCTCCAGGGCATCTCAGGCTTCATCTTCCACCTCCAGCTGTGTGAGGGCCAGCAGCTCAAACACCAGATCCTGCTCAAGGCCCACACTGAGAGTGGGAAACAAAGATGGATCACAGCCATGTTCCCCTCTGATCCATTGGAAGACATTGAGCAGGCCAGTGAGAATGATGATCTTTCTCAAGTTCAGTGCATCAAGAGCTACCAGGCCCAAGAGCATGACGAGCTAACATTGGAGAAGGCTGATATTCTTCAAGCCAAGACCATTACAAGTGACGGCTGGGTGGAGGGCATTCGGCTGTCAGATGGGGAGCGGGGCTGGTTCCCCAAAACCAATGTAGAGGAGATCACAAATCGCAGTGCGCGTCTCCGCAACCTCAGAGAAAACATCCGCATCAAGTGTGTCACACAGAAACTGGAGGAGGAGCTCTTTTAAGTGTCCTCTCCACCCTGCGGCTTTTAACTTACACTTGGAATGTCCAATCGTAATGGTGTAATAACTCTCAACCCCAAACATCTATAAGTCCCAGCTTTTACGCAACACCAGTTA

Function

NR:

description
rho guanine nucleotide exchange factor 19-like isoform X2

GO:      GO:0005089,GO:0032319

KEGG:

id description
K20691 ARHGEF19, WGEF; Rho guanine nucleotide exchange factor 19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616228.2 False 5434 mRNA 0.49 16 52957040 52990201
XM_021616229.2 True 5033 mRNA 0.48 17 52957042 52990201

Neighbor

gene id symbol gene type direction distance location
ano11 LOC106572008 coding upstream 88 52924399 ~ 52956952 (+)
LOC110532374 LOC106572009 coding upstream 44513 52859616 ~ 52912527 (+)
LOC110532373 LOC106572011 coding upstream 97789 52854835 ~ 52859251 (+)
LOC110532371 LOC106572012 coding upstream 123962 52816709 ~ 52833078 (+)
LOC110532370 LOC106572015 coding upstream 169884 52750213 ~ 52787156 (+)
trnaa-ugc-36 NA coding downstream 3662 52993863 ~ 52993938 (+)
LOC110532379 LOC106572005 coding downstream 52876 53043077 ~ 53121864 (+)
LOC110532383 LOC106572002 coding downstream 138237 53128438 ~ 53154128 (+)
LOC110532385 LOC106572000 coding downstream 212780 53202981 ~ 53214762 (+)
LOC110532390 gbrd coding downstream 414704 53404905 ~ 53425693 (+)
LOC110532366 NA non-coding upstream 295994 52659674 ~ 52663309 (+)
G817021 NA non-coding upstream 302114 52654659 ~ 52654926 (+)
G817016 NA non-coding upstream 309884 52646934 ~ 52647156 (+)
G816989 NA non-coding upstream 360001 52596812 ~ 52597039 (+)
G816988 NA non-coding upstream 360456 52595984 ~ 52596584 (+)
G817215 NA non-coding downstream 42938 53033139 ~ 53033358 (+)
G817221 NA non-coding downstream 47928 53038129 ~ 53038474 (+)
G817222 NA non-coding downstream 49314 53039515 ~ 53040495 (+)
G817307 NA non-coding downstream 265110 53255311 ~ 53256967 (+)
G817278 NA non-coding downstream 277739 53267940 ~ 53268576 (+)
LOC110532368 LOC106572016 other upstream 229520 52692676 ~ 52734929 (+)
LOC110532349 LOC106591969 other upstream 631400 52323001 ~ 52325924 (+)
G815767 casz1 other upstream 1610546 51345372 ~ 51346494 (+)
G815610 NA other upstream 1878098 51078447 ~ 51078942 (+)
G815428 NA other upstream 2156659 50796214 ~ 50800381 (+)
G819897 NA other downstream 1736670 54726871 ~ 54727376 (+)
G820665 NA other downstream 2243057 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 2540836 55531033 ~ 55647541 (+)
G820944 NA other downstream 2707439 55697640 ~ 55697978 (+)
G821363 uhrf1bp1 other downstream 2983841 55974042 ~ 55975316 (+)

Expression


Co-expression Network