XLOC_026732


Basic Information

Item Value
gene id XLOC_026732
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 47194738 ~ 47196960 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052489
GGCTGGAACATTTCAGTACGCTTGCCACGTCACTTTGCCTCCCCTTTCGTCCCTTTTTTTACTTTGGTCCCGCTCTTTGCCTCTCTTTTCTCCGTTTTCTGCTGTCTCTTTGCATCGGAAACAACCGCCAAGGGAACATTTCTAAGAGTTTATCGAAAAAGCATCATGGCAGAGCGTGGTAAGTGCGACTGTAAGTGGTTGAGAACATGAAAAAAGGAGCCATGATGGCAGAACGCTCCGTTATTCCTCTTGAAGGAGGCCTGGGATATGGATTTGCCACGCAGCAGTGAATGTTCGTGTGCGGTCCTCAGGGCAGTGACCTACGCTCCAGCCACCTCTTGCCTCCCCCTCGCCTGCCCAGTGTTCAGACTACCTGTTCATCATGCTGCAGCTGAACAGTAGTCCGCACATTGGTTAGGCTGGGCTGGGACACACACACCCGCCAAGCCGCCGTAAGATCTCTGCCATTCGCCGGTGAACGAATAAAGCAAGACTTTAGCCCCGCACaatacatcgtttcagcatcgacatCGCAATGAACCACATCGCTGAATTCACAATGTGGAGCCTACATGGAGTAAACTTTACCCCTAATAGAGTTTGCATGCGTTGTTAAGACctttaaataagttttaataaagcactttttttaattcacatgtttgctctgttgtatttatcTATTAGTTAAATTGGTTTAGTATATTTAATGCAGATATTCTCCTCTACAAAATTAATCCAAATCAATGTAAAATGACGAATTAGAGCCATTCAAGAATTAGAGCCATTCAAGTCATCTGATGAAGTTGTGTTTATAtagtaataaattaaatgtgGT
>TCONS_00052055
CCTCCCCCTCGCCTGCCCAGTGTTCAGACTACCTGTTCATCATGCTGCAGCTGAACAGTAGTCCGCACATTGGTTAGGCTGGGCTGGGACACACACAC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0048747 muscle fiber development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:1903169 regulation of calcium ion transmembrane transport biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0010959 regulation of metal ion transport biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0031033 myosin filament organization biological_process
GO:0031034 myosin filament assembly biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0071688 striated muscle myosin thick filament assembly biological_process
GO:0071691 cardiac muscle thin filament assembly biological_process
GO:0003012 muscle system process biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0051924 regulation of calcium ion transport biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0042383 sarcolemma cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031672 A band cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0031430 M band cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000081869

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052489 False 838 lncRNA 0.44 2 47194738 47196960
TCONS_00052055 True 98 miRNA 0.58 1 47195137 47195234

Neighbor

gene id symbol gene type direction distance location
XLOC_026731 NA coding downstream 63627 47130032 ~ 47131111 (-)
XLOC_026730 qtrt1 coding downstream 66642 47114328 ~ 47128096 (-)
XLOC_026729 CR392045.1 coding downstream 89471 46919522 ~ 47105267 (-)
XLOC_026728 elavl3 coding downstream 376737 46800190 ~ 46818001 (-)
XLOC_026727 CR385086.1 coding downstream 432032 46757611 ~ 46762706 (-)
XLOC_026733 tmed1a coding upstream 25136 47222096 ~ 47235997 (-)
XLOC_026734 tnfsf18 coding upstream 84276 47281236 ~ 47294365 (-)
XLOC_026735 adgrl1a coding upstream 301473 47498433 ~ 47876427 (-)
XLOC_026736 NA coding upstream 630242 47827202 ~ 47833114 (-)
XLOC_026737 znf750 coding upstream 1056242 48253202 ~ 48259289 (-)
XLOC_026726 NA non-coding downstream 731482 46462585 ~ 46463256 (-)
XLOC_026723 CR450782.1 non-coding downstream 967728 46224589 ~ 46227010 (-)
XLOC_026722 NA non-coding downstream 977265 46153127 ~ 46217473 (-)
XLOC_026738 NA non-coding upstream 1126580 48323540 ~ 48328133 (-)
XLOC_026739 NA non-coding upstream 1264537 48461497 ~ 48473754 (-)
XLOC_026745 NA non-coding upstream 1802943 48999903 ~ 49001293 (-)
XLOC_026747 NA non-coding upstream 1826940 49023900 ~ 49036782 (-)

Expression


Co-expression Network