LOC110532383 (LOC106572002)


Basic Information

Item Value
gene id LOC110532383
gene name LOC106572002
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 53128438 ~ 53154128 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616246.2
TGGCGGACAGTGCGGAATAGCGCTGCGCCGGAGGGTTGTATAGCTGCAGACTTTTTGATGTAGCTTTGAGCTGGCGGTGGGTGACAAAGGATTCCACAACCCATTCCGCTGGACTGTGCTTGCCACGGTTATCCTCAATTGAAAATATTGTGTTCAAATAAAAGGATGCAATGGATGGCCATTGATATCCATGGGGATAGATGGTGGTGAAATTGACTGGTCTGTCTTTGTTGAGGGAATTTTTCTGGAAGGTGATATCGCAACGATGGTGTGTCAGACGTTCAGAAGTTTACAAAGAGGCGATGTCAGTGCTCCTTTGCTTGCTGTGACGGTGCTTGGGGTTCTGTTCGCAGGGATGCAAGAAACCACAGCATTTCCCACCTGGAGAATAGAGGAAGAAGCTCACACCTCCGGTGTGTTGATGATTGGGATTCGTAAAGATGCTCACTCGCAGGTTCTCCACCTCTCCAGGAACAAGCGCTACACCTTCACCCCCGAGAAACTAAAATGGGACAAGTTCAAGCTCACATACAAGCTGCTCTCTTTCCCAAGGAACCTGATGAATGCCAGTGACACTCGTCGGGGTATCGCCAAAGCCTTCACTATGTGGAGTGACGTCTCACCCTTCAGCTTTAGAGAAGTTCCCGCTGACCAGGAGGCAGACATCAAGATAGGCTTCTACCCCATCAACCACACAGACTGTCTGCAGTCCTACTTGCACCACTGTTTTGACGGCATTACTGGCGAACTGGCCCACGCCTTCTTCCCCCCGACGGGGGAGATCCACTTTGACGACCATGAGTATTGGATTCTGGGAAACATGCGCTTCAGCTGGAAAAAAGGGGTGTGGCTGACAGACTTGGTCCACGTAGCGGCTCATGAGATCGGCCACATCCTGGGCCTCATGCACTCCCTGAACCCTAAGGCCATCATGCACCTGAATGCAACTCTGACGGGGCGCAAGCTCATCACACAGGACGAGGTGTGGGGCCTGCACCGACTCTACGgATGTTTGGATAGATTATTTATCTGTCCAGCCTGGGCGCGGAAAGGCTATTGCGACAGTAAGCGCAAACTCATGCAGAAGCACTGCCCCTCCAGCTGTGATTTCTGTTACGAGTTCCCATTCCCCactgtggcccccacccccacaccCCAACGGACCAAACATAAGCTGGTGGCTGAGGGGAAGAAGCTCACCTTCCGATGTGGGAAGAAAATTGCAGCTAAGAAAGGCAAAGTATACTGGTACAAGGACGGAGAGCTTCTGGAGTACTCCCACCCTGGCTACCTCTCCCTaaaggatgaccacatcagtattgtggcCAATGCGATCAACGAGGGCACATACACCTGCATCGTGAGGAAAAAGAACAAGGTCCTCACCAACTACTCCTGGAGGGTACGTGTGCGCTTCTGAGGGCATTGCCACTCTCTGCACACAGAAGCACTGGGTATTAGCACAGAGACCGACCACACACACGACCACAGAAGAATAATTCCTAGAAAATAAGTCCCTCAGACCACTGCAATTTCACTGCACGCTCTTGGGCACACTCAAAATGGCCACCAGTCCACCCATTGACTTGAATGTGGATGTCCGTTCTAGGAATTATATTTCCATGCACACGTTCGCTCACACAAACATTGCTTGGTCAAATGGGGACTGCACTCACTTGGGCACATATTTTAATGTATGTACGTTCTATTTCTAAACAATCATgttatgtaaaaaaaattaaatagtcATGTATTTTCATATGTGCACAATAAACATTTCTGTGATCATTAGTAAATTGAATATTGATGTAAAATTACATTGTGACAATCGAGTACAAATTAGATTCTATTATTATGTGAACAACAGAATGTTCTTTGAAGTTAGAGGTCACAAACACTTACAGGCTAGCTAGTAACCTCAGACTTGAAATATTGTCCTGAAATGTTTTATAATTTTGCCTAACCTGGCTATATTAATCCATGGGTAATGCATTCTAAAGCTACTGCCTCTTAATACAGGTCATATAAATAATTTACTGTCTGAATTGAAGTTGGGTAAACCAAAAACAAACATTGTGTTTAGTCACTGGAAATATTTAGACCTTTATTCACATATGGAACACCTCCGATATCTTGCTTGCTCAGCTATCCTTTAGGTGGAGCCAATACTTTCTCTCCAGAAGGTGCAGTTCCACTAACAGCTCCCTTTACATGCTCATTTGACACATCAGGTGTAATAATCCACAGAAGGGCTTAGAGGGGACTCTCAGATAAAACTGATTTATGTACATTTCCATTTGTGTTGGTTCTAAAGAGTCTCCAGACGAGGGAACATTTTGTAACTGTTCCAGTCTGAGCAGCCAGCAGTCTCCCAGAAATGAGACTGCACTGTTTATTTTCCTCCAGCTAGAAATCAAATAATTTATTGGTTTAGTCCTAGAAATCGCAGCCACTTTAACAAAGACAAAAATCTGGGGCTCTTTTCCCTGAAAGAACAAAGTCCTGAGACAAAGTGTGCAGTGCAAAGAATGACATCACTCTTGGGACGTCTATTGAGCTGGATTCAACGCTGGGAATTTTTGGGGACTCGACTTCCCTTTTTATTTTTTCCTTTTGGCAGGCAGTGTGTGGTGCTGTTTGCTTAGCTTAGACAGCATTTATAAATACCAGCAAAAAGGTGGACATATAAAAGATTCACATTTTATTTCTAGCAAAAACATGTCCCGGGTCAATGTAAGCCATCGGTTATACAGTAAAGTCCTTATAATATGATGGATCGACATGGCTCTAACACTGCTACATTATTATACAGTATCTCCAGTACTCAAATACCAACGACTTCAACTCTGGTCCTCTTCAGCAGTGTAAAAAAGACAGAAAACAAAAAGCCAACATTAGCTAAGGTACAGACAAAATTGTAGTTAGGTTTTGACGCACAGTTGCCTCATTTCCATAAAAGTTAAACCTTGTCAGAATCGAGAAAATACTTTAAAAGTTCAATGGTTGGGATTCAGCCATATAGTTTGGAAAAAAGGGACAGTGTGTTTGTCCATCGTTCATATCATGTGACGACCAGTCTCCACCCTCACAGGGTGAGGGCAGTAAGCTGACCCTGACAACGGAAGCCATTCCCCCAATGAGTCCAGCCACATAAAAAACTAAATGTCCCATGATTCTTGTCCGGTCAGCTGAACAGGCTAGTATGTCTCTTCCCATACGCAGGGTGTCCTGCCCTCCAGGCGCAGCTCAGAACTTGAGGCTGAACCCTGGGCCCACGGCAGAAGCCCCTTGGTTGCTGGTAGTCAGATGGAAGCCTGAGTCTTTCAGGTCATCGTCACCCTGGAGAGAGGACAAGCCACACACATTAGCTGATGAGGCACATTGCCTTTATGCCAGAGAACTAATGAAATCTGGAAAAATAAGTATTAAGCAGTGGGAAGATGTGTCTTGACAACACACAGTAAAGTGCTGTAGGTCTACAATCTATCAAACACAGAAACCAAGCTCAGATGTCAAAACCTAGTTGACAGAGGGATGTAGAGTTAAACCCAGCCTCACCAGCTGACTGTAGCCCAGGCCTCCCTCGGGGGGGCGCGGGCTGGTCCCCCTCTTCACCCTCTGTTGCTCGCTCTTGGCCGGCCAGGTGGGGAACATGGAGGGGTCGATGGGCTGCGGTGTCTCCCGGAAATACTCGTGCTTCAGCGCCTCGTCCGATAGGATCCTCTTGCTGGGGCAGTAGGTGAGGAACCTAGTGGAAAGGGAAAAAGTCAAGGCCAGGGACGGTAGAGGTCACTCAATAAGGTGGTACTTGCGAAACAAGACTTTAAATCTTCGTCATACTTCTACTCTTCTTACTGTTTAAGCTAGAAACGGCATTCAAACTTAATTGTGCAGACTGGTCTGCTTTTTGATATCAATTCatttgtgtgtctttttgtccaTCCTCATAGACTAACATTCTAATGctccccattgtgacatcacttCCAACTTCCATTCACTGTAAATGCAACAATTCAACTTGACACAAAATCAGCTACATTGACCATTTTGCCAAACCCTTACAAAAGTTAGAGGGTGAAACATCTTCCTCTACTTCGCTGCTATTCAAATCTGAAATAACAGAATTATCTGGTACCGATGTAACCTTACAGCTGTTTAAGTGACCATCAACATTTTCTGTAACTTTTTATAAACTTGACATTGACCCCTTTCAAAACAGGTTAGACAAAAGTTAGACGGTATGACATCTGTCTAATTCTTTGTTATTCAAATCAGGAATAAAGAACAGAAATATCTACTACCAATCAAGAGGTACAGCTGTTTTAGTAACCATGTCAACTAATTTAGCCAACTTCCCAGAGTTGGATTTACTGCCATGGAACTTTTCAGAACTTTCAAATTATAAAAATGGGGGGATTAGCATGAGACGATGAGTAAACATTATGACTTTTGACACTAATCAGCTACCTTGACCACTTTTCTGAACAATTTGGTGTACACAAAAACTTCAAAAGGTATGGCACATTTGTCTACCTCTTAGATGTTCAAATCTGAAATCAGAACAGCAATAACTATTAatcatgccacacacacacacacatctacacctTCAACCATAGATTCATTCCTTTATCATACCAATCAGTCCAACTTAACCTTGTTTtatccctttatccctccataCATATGGTCTTCCATCCCTGTATCCTTTTTTTAATTCACCTGTCCATTTATTTATCTATCCTGTCATAACTTTCTTTTAACAGCTTTTTTCTTTGATTAAGAAATTAATGTATGGTAGAAGTAAGGGATAAATGCTTGGGATAAAATAAAGTTTTTAACCGTGTTTTAAAGTTCA
>XM_021616247.2
GTGCGGAATAGCGCTGCGCCGGAGGGTTGTATAGCTGCAGACTTTTTGATGTAGCTTTGAGCTGGCGGTGGGTGACAAAGGATTCCACAACCCATTCCGCTGGACTGTGCTTGCCACGGTTATCCTCAATTGAAAATATTGTGTTCAAATAAAAGGATGCAATGGATGGCCATTGATATCCATGGGGATAGATGGTGGTGAAATTGACTGGTCTGTCTTTGTTGAGGGAATTTTTCTGGAAGGTGATATCGCAACGATGGTGTGTCAGACGTTCAGAAGTTTACAAAGAGGCGATGTCAGTGCTCCTTTGCTTGCTGTGACGGTGCTTGGGGTTCTGTTCGCAGGGATGCAAGAAACCACAGCATTTCCCACCTGGAGAATAGAGAAGCTCACACCTCCGGTGTGTTGATGATTGGGATTCGTAAAGATGCTCACTCGCAGGTTCTCCACCTCTCCAGGAACAAGCGCTACACCTTCACCCCCGAGAAACTAAAATGGGACAAGTTCAAGCTCACATACAAGCTGCTCTCTTTCCCAAGGAACCTGATGAATGCCAGTGACACTCGTCGGGGTATCGCCAAAGCCTTCACTATGTGGAGTGACGTCTCACCCTTCAGCTTTAGAGAAGTTCCCGCTGACCAGGAGGCAGACATCAAGATAGGCTTCTACCCCATCAACCACACAGACTGTCTGCAGTCCTACTTGCACCACTGTTTTGACGGCATTACTGGCGAACTGGCCCACGCCTTCTTCCCCCCGACGGGGGAGATCCACTTTGACGACCATGAGTATTGGATTCTGGGAAACATGCGCTTCAGCTGGAAAAAAGGGGTGTGGCTGACAGACTTGGTCCACGTAGCGGCTCATGAGATCGGCCACATCCTGGGCCTCATGCACTCCCTGAACCCTAAGGCCATCATGCACCTGAATGCAACTCTGACGGGGCGCAAGCTCATCACACAGGACGAGGTGTGGGGCCTGCACCGACTCTACGgATGTTTGGATAGATTATTTATCTGTCCAGCCTGGGCGCGGAAAGGCTATTGCGACAGTAAGCGCAAACTCATGCAGAAGCACTGCCCCTCCAGCTGTGATTTCTGTTACGAGTTCCCATTCCCCactgtggcccccacccccacaccCCAACGGACCAAACATAAGCTGGTGGCTGAGGGGAAGAAGCTCACCTTCCGATGTGGGAAGAAAATTGCAGCTAAGAAAGGCAAAGTATACTGGTACAAGGACGGAGAGCTTCTGGAGTACTCCCACCCTGGCTACCTCTCCCTaaaggatgaccacatcagtattgtggcCAATGCGATCAACGAGGGCACATACACCTGCATCGTGAGGAAAAAGAACAAGGTCCTCACCAACTACTCCTGGAGGGTACGTGTGCGCTTCTGAGGGCATTGCCACTCTCTGCACACAGAAGCACTGGGTATTAGCACAGAGACCGACCACACACACGACCACAGAAGAATAATTCCTAGAAAATAAGTCCCTCAGACCACTGCAATTTCACTGCACGCTCTTGGGCACACTCAAAATGGCCACCAGTCCACCCATTGACTTGAATGTGGATGTCCGTTCTAGGAATTATATTTCCATGCACACGTTCGCTCACACAAACATTGCTTGGTCAAATGGGGACTGCACTCACTTGGGCACATATTTTAATGTATGTACGTTCTATTTCTAAACAATCATgttatgtaaaaaaaattaaatagtcATGTATTTTCATATGTGCACAATAAACATTTCTGTGATCATTAGTAAATTGAATATTGATGTAAAATTACATTGTGACAATCGAGTACAAATTAGATTCTATTATTATGTGAACAACAGAATGTTCTTTGAAGTTAGAGGTCACAAACACTTACAGGCTAGCTAGTAACCTCAGACTTGAAATATTGTCCTGAAATGTTTTATAATTTTGCCTAACCTGGCTATATTAATCCATGGGTAATGCATTCTAAAGCTACTGCCTCTTAATACAGGTCATATAAATAATTTACTGTCTGAATTGAAGTTGGGTAAACCAAAAACAAACATTGTGTTTAGTCACTGGAAATATTTAGACCTTTATTCACATATGGAACACCTCCGATATCTTGCTTGCTCAGCTATCCTTTAGGTGGAGCCAATACTTTCTCTCCAGAAGGTGCAGTTCCACTAACAGCTCCCTTTACATGCTCATTTGACACATCAGGTGTAATAATCCACAGAAGGGCTTAGAGGGGACTCTCAGATAAAACTGATTTATGTACATTTCCATTTGTGTTGGTTCTAAAGAGTCTCCAGACGAGGGAACATTTTGTAACTGTTCCAGTCTGAGCAGCCAGCAGTCTCCCAGAAATGAGACTGCACTGTTTATTTTCCTCCAGCTAGAAATCAAATAATTTATTGGTTTAGTCCTAGAAATCGCAGCCACTTTAACAAAGACAAAAATCTGGGGCTCTTTTCCCTGAAAGAACAAAGTCCTGAGACAAAGTGTGCAGTGCAAAGAATGACATCACTCTTGGGACGTCTATTGAGCTGGATTCAACGCTGGGAATTTTTGGGGACTCGACTTCCCTTTTTATTTTTTCCTTTTGGCAGGCAGTGTGTGGTGCTGTTTGCTTAGCTTAGACAGCATTTATAAATACCAGCAAAAAGGTGGACATATAAAAGATTCACATTTTATTTCTAGCAAAAACATGTCCCGGGTCAATGTAAGCCATCGGTTATACAGTAAAGTCCTTATAATATGATGGATCGACATGGCTCTAACACTGCTACATTATTATACAGTATCTCCAGTACTCAAATACCAACGACTTCAACTCTGGTCCTCTTCAGCAGTGTAAAAAAGACAGAAAACAAAAAGCCAACATTAGCTAAGGTACAGACAAAATTGTAGTTAGGTTTTGACGCACAGTTGCCTCATTTCCATAAAAGTTAAACCTTGTCAGAATCGAGAAAATACTTTAAAAGTTCAATGGTTGGGATTCAGCCATATAGTTTGGAAAAAAGGGACAGTGTGTTTGTCCATCGTTCATATCATGTGACGACCAGTCTCCACCCTCACAGGGTGAGGGCAGTAAGCTGACCCTGACAACGGAAGCCATTCCCCCAATGAGTCCAGCCACATAAAAAACTAAATGTCCCATGATTCTTGTCCGGTCAGCTGAACAGGCTAGTATGTCTCTTCCCATACGCAGGGTGTCCTGCCCTCCAGGCGCAGCTCAGAACTTGAGGCTGAACCCTGGGCCCACGGCAGAAGCCCCTTGGTTGCTGGTAGTCAGATGGAAGCCTGAGTCTTTCAGGTCATCGTCACCCTGGAGAGAGGACAAGCCACACACATTAGCTGATGAGGCACATTGCCTTTATGCCAGAGAACTAATGAAATCTGGAAAAATAAGTATTAAGCAGTGGGAAGATGTGTCTTGACAACACACAGTAAAGTGCTGTAGGTCTACAATCTATCAAACACAGAAACCAAGCTCAGATGTCAAAACCTAGTTGACAGAGGGATGTAGAGTTAAACCCAGCCTCACCAGCTGACTGTAGCCCAGGCCTCCCTCGGGGGGGCGCGGGCTGGTCCCCCTCTTCACCCTCTGTTGCTCGCTCTTGGCCGGCCAGGTGGGGAACATGGAGGGGTCGATGGGCTGCGGTGTCTCCCGGAAATACTCGTGCTTCAGCGCCTCGTCCGATAGGATCCTCTTGCTGGGGCAGTAGGTGAGGAACCTAGTGGAAAGGGAAAAAGTCAAGGCCAGGGACGGTAGAGGTCACTCAATAAGGTGGTACTTGCGAAACAAGACTTTAAATCTTCGTCATACTTCTACTCTTCTTACTGTTTAAGCTAGAAACGGCATTCAAACTTAATTGTGCAGACTGGTCTGCTTTTTGATATCAATTCatttgtgtgtctttttgtccaTCCTCATAGACTAACATTCTAATGctccccattgtgacatcacttCCAACTTCCATTCACTGTAAATGCAACAATTCAACTTGACACAAAATCAGCTACATTGACCATTTTGCCAAACCCTTACAAAAGTTAGAGGGTGAAACATCTTCCTCTACTTCGCTGCTATTCAAATCTGAAATAACAGAATTATCTGGTACCGATGTAACCTTACAGCTGTTTAAGTGACCATCAACATTTTCTGTAACTTTTTATAAACTTGACATTGACCCCTTTCAAAACAGGTTAGACAAAAGTTAGACGGTATGACATCTGTCTAATTCTTTGTTATTCAAATCAGGAATAAAGAACAGAAATATCTACTACCAATCAAGAGGTACAGCTGTTTTAGTAACCATGTCAACTAATTTAGCCAACTTCCCAGAGTTGGATTTACTGCCATGGAACTTTTCAGAACTTTCAAATTATAAAAATGGGGGGATTAGCATGAGACGATGAGTAAACATTATGACTTTTGACACTAATCAGCTACCTTGACCACTTTTCTGAACAATTTGGTGTACACAAAAACTTCAAAAGGTATGGCACATTTGTCTACCTCTTAGATGTTCAAATCTGAAATCAGAACAGCAATAACTATTAatcatgccacacacacacacacatctacacctTCAACCATAGATTCATTCCTTTATCATACCAATCAGTCCAACTTAACCTTGTTTtatccctttatccctccataCATATGGTCTTCCATCCCTGTATCCTTTTTTTAATTCACCTGTCCATTTATTTATCTATCCTGTCATAACTTTCTTTTAACAGCTTTTTTCTTTGATTAAGAAATTAATGTATGGTAGAAGTAAGGGATAAATGCTTGGGATAAAATAAAGTTTTTAACCGTGTTTTAAAGTTCA

Function

NR:

description
matrix metalloproteinase-23-like isoform X1

GO: NA

KEGG:

id description
K08001 MMP23; matrix metalloproteinase-23 (CA-MMP)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616246.2 False 4861 mRNA 0.44 8 53128438 53154128
XM_021616247.2 True 4848 mRNA 0.44 8 53128447 53154128

Neighbor

gene id symbol gene type direction distance location
LOC110532379 LOC106572005 coding upstream 6574 53043077 ~ 53121864 (+)
trnaa-ugc-36 NA coding upstream 134500 52993863 ~ 52993938 (+)
LOC110532377 LOC106572006 coding upstream 138237 52957040 ~ 52990201 (+)
ano11 LOC106572008 coding upstream 171486 52924399 ~ 52956952 (+)
LOC110532374 LOC106572009 coding upstream 215911 52859616 ~ 52912527 (+)
LOC110532385 LOC106572000 coding downstream 48853 53202981 ~ 53214762 (+)
LOC110532390 gbrd coding downstream 250777 53404905 ~ 53425693 (+)
LOC110532391 LOC106571996 coding downstream 441955 53596083 ~ 53676213 (+)
LOC118966073 NA coding downstream 1077621 54231749 ~ 54233447 (+)
LOC110532392 dffb coding downstream 1080668 54234796 ~ 54239506 (+)
G817222 NA non-coding upstream 87943 53039515 ~ 53040495 (+)
G817221 NA non-coding upstream 89964 53038129 ~ 53038474 (+)
G817215 NA non-coding upstream 95080 53033139 ~ 53033358 (+)
LOC110532366 NA non-coding upstream 467392 52659674 ~ 52663309 (+)
G817021 NA non-coding upstream 473512 52654659 ~ 52654926 (+)
G817307 NA non-coding downstream 101183 53255311 ~ 53256967 (+)
G817278 NA non-coding downstream 113812 53267940 ~ 53268576 (+)
G817374 NA non-coding downstream 239781 53393909 ~ 53426571 (+)
G818719 NA non-coding downstream 538145 53692273 ~ 53692710 (+)
LOC110532368 LOC106572016 other upstream 400918 52692676 ~ 52734929 (+)
LOC110532349 LOC106591969 other upstream 802798 52323001 ~ 52325924 (+)
G815767 casz1 other upstream 1781944 51345372 ~ 51346494 (+)
G815610 NA other upstream 2049496 51078447 ~ 51078942 (+)
G815428 NA other upstream 2328057 50796214 ~ 50800381 (+)
G819897 NA other downstream 1572743 54726871 ~ 54727376 (+)
G820665 NA other downstream 2079130 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 2376909 55531033 ~ 55647541 (+)
G820944 NA other downstream 2543512 55697640 ~ 55697978 (+)
G821363 uhrf1bp1 other downstream 2819914 55974042 ~ 55975316 (+)

Expression


Co-expression Network