LOC110532385 (LOC106572000)


Basic Information

Item Value
gene id LOC110532385
gene name LOC106572000
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 53202981 ~ 53214762 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616249.2
ATATACACTTGTAAGCGGAACTGTGGCGTTATGGTTTGCACACCGCCATTAAAACTCAAAAAAATATGTGGCGTGAATACGTTTGAATTTAGCAGCCAATGTGGGCCTGCTTGCTGagatgtagaaacatcaagaACACGATTATCTAGTTACTATTTCACTTAAAAATGGAAGAGATACGTCCACTGTTGAGCAATCAGCCTTGGGAGGGCTCAGATCTCCCATCCCCAAACCTGAGACCAAGGCACCAGGAACTGATCCCAACGCCATGTGGCCCGATAAAGCCTTGGTCAGAGCTGTCATGCTTGGTGAAGCTTTACTTCTGCTTCACCATCGCCTCTCTACTGGCACTATTGGCCCTCACACTGACAAACATCTACAGGCAAAGCATGGCAACGTACAGCTATGAGGACGACTTCACTGTATCTCTCATCCAACTGGTTGGAATTTTGTTCTGCATATACTACATCACCAGGGGAATCCTGCAGGAGAACAGGCAGGAGTTGATAGTGTTTGTCCTCAGTGTGTTGGTGGTCATGATGCGCTCTGTGGTCAACTTCATGGTGCTCCCTCTCCAGGATAGAAAGGACCTGCTTCTGGTGCGGTTTGTGTGCATCCTGTGTGTGGGCGTGGTCCATGTCCTGTGCGCCACTCTGCTCATCCAAAGGCCCAACATGATGGCCTTCCGGGTGGGCGGAGCTCTGGAGAGCTTCCAGGAGCAGTACTTCCTGATCAACCTGTGCTTCTCCATGGTCACCTTTGACCTACAGGCCCAGCTGTGCCTTTGCATACTGATTATGACGTCAGGTACAACTATGTCCTTCACGAACAGCATCATCCTGGGCTTTGGAGTGGTCTGGGCCTGCCTTACCGCAGCCATGGGGGCTATCGCAGTTTTAAAAGAAACCAAGCCGCTGGTTTGGGTCTTTGTTCTTCTTAATGTGCCGGAGGTGGCCTACTTCGTGTACCTGATGTACAGGATCAGTGTACACTGGGGGCAGGATAAGACGTATACACTGGAGGCCGCTGCTGTGACTGGAGCGGGGATCTCAGTGCTGATCAAAGGCGTGCTTTTCTGGTCTCTCTTCCGATTGGCGCGCAGCTTCGGCCAGGGcctgagggagaggatgTTTTCATCGGACAAGCAGTAAAGTGCCGTCATGAGAAGGAAGTGGCTACGGTTACACAGGATGGATAAGCAACAATTTCTACATTTTGTAACAACTCTCTGGCTCTGACCAATGTTTGAAGTTAGGAACTAGAGGGAAATGCACTCAAATGGGCATTGGACCGGTCTGTTTTTACTGAAGATGATTTCACTgcaagtgccttcggaaagtatttagacccctttactttcccacattttgttacagccttattctaaaatgggtgaaataaaaaaataaaaatcctcagcaatctacacacaataccccataatgacaaagtgtaaacaggtttttagaaatgtttgctcatttataaaaaataaacatcttatttacataaatattcagacccttttctataaGACTCGAAATTTAGTTCAgatgcgtcctgtttccattgatcaaccttgatGTTTTGACAActagattggagtccacatgtggtaaatttgGATATGGAAAGGCACATGCCTGTCtagataaggtcccacagttgacagagcaaaaaccaagccatgaggtcgaaaaaATTGTCTGtacagctccgagacaggactgtgttgagacacagatctggggaagggtaccaaaaaatgtctgca
>XM_021616250.2
ATATACACTTGTAAGCGGAACTGTGGCGTTATGGTTTGCACACCGCCATTAAAACTCAAAAAAATATGTGGCGTGAATACGTTTGAATTTAGCAGCCAATGTGGGCCTGCTTGCTGagatgtagaaacatcaagaACACGATTATCTAGTTACTATTTCACTTAAAAATGGAAGAGATACGTCCACTGTTGAGCAATCAGCCTTGGGAGGGCTCAGATCTCCCATCCCCAAACCTGAGACCAAGGCACCAGGAACTGATCCCAACGCCATGTGGCCCGATAAAGCCTTGGTCAGAGCTGTCATGCTTGGTGAAGCTTTACTTCTGCTTCACCATCGCCTCTCTACTGGCACTATTGGCCCTCACACTGACAAACATCTACAGGCAAAGCATGGCAACGTACAGCTATGAGGACGACTTCACTGTATCTCTCATCCAACTGGTTGGAATTTTGTTCTGCATATACTACATCACCAGGGGAATCCTGCAGGAGAACAGGCAGGAGTTGATAGTGTTTGTCCTCAGTGTGTTGGTGGTCATGATGCGCTCTGTGGTCAACTTCATGGTGCTCCCTCTCCAGGATAGAAAGGACCTGCTTCTGCTGTGCCTTTGCATACTGATTATGACGTCAGGTACAACTATGTCCTTCACGAACAGCATCATCCTGGGCTTTGGAGTGGTCTGGGCCTGCCTTACCGCAGCCATGGGGGCTATCGCAGTTTTAAAAGAAACCAAGCCGCTGGTTTGGGTCTTTGTTCTTCTTAATGTGCCGGAGGTGGCCTACTTCGTGTACCTGATGTACAGGATCAGTGTACACTGGGGGCAGGATAAGACGTATACACTGGAGGCCGCTGCTGTGACTGGAGCGGGGATCTCAGTGCTGATCAAAGGCGTGCTTTTCTGGTCTCTCTTCCGATTGGCGCGCAGCTTCGGCCAGGGcctgagggagaggatgTTTTCATCGGACAAGCAGTAAAGTGCCGTCATGAGAAGGAAGTGGCTACGGTTACACAGGATGGATAAGCAACAATTTCTACATTTTGTAACAACTCTCTGGCTCTGACCAATGTTTGAAGTTAGGAACTAGAGGGAAATGCACTCAAATGGGCATTGGACCGGTCTGTTTTTACTGAAGATGATTTCACTgcaagtgccttcggaaagtatttagacccctttactttcccacattttgttacagccttattctaaaatgggtgaaataaaaaaataaaaatcctcagcaatctacacacaataccccataatgacaaagtgtaaacaggtttttagaaatgtttgctcatttataaaaaataaacatcttatttacataaatattcagacccttttctataaGACTCGAAATTTAGTTCAgatgcgtcctgtttccattgatcaaccttgatGTTTTGACAActagattggagtccacatgtggtaaatttgGATATGGAAAGGCACATGCCTGTCtagataaggtcccacagttgacagagcaaaaaccaagccatgaggtcgaaaaaATTGTCTGtacagctccgagacaggactgtgttgagacacagatctggggaagggtaccaaaaaatgtctgca

Function

NR:

description
uncharacterized protein LOC110532385 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616249.2 False 1774 mRNA 0.47 9 53202981 53214762
XM_021616250.2 True 1597 mRNA 0.45 8 53202981 53214762

Neighbor

gene id symbol gene type direction distance location
LOC110532383 LOC106572002 coding upstream 48853 53128438 ~ 53154128 (+)
LOC110532379 LOC106572005 coding upstream 81117 53043077 ~ 53121864 (+)
trnaa-ugc-36 NA coding upstream 209043 52993863 ~ 52993938 (+)
LOC110532377 LOC106572006 coding upstream 212780 52957040 ~ 52990201 (+)
ano11 LOC106572008 coding upstream 246029 52924399 ~ 52956952 (+)
LOC110532390 gbrd coding downstream 190143 53404905 ~ 53425693 (+)
LOC110532391 LOC106571996 coding downstream 381321 53596083 ~ 53676213 (+)
LOC118966073 NA coding downstream 1016987 54231749 ~ 54233447 (+)
LOC110532392 dffb coding downstream 1020034 54234796 ~ 54239506 (+)
LOC110532396 LOC106571991 coding downstream 1030561 54245323 ~ 54249584 (+)
G817222 NA non-coding upstream 162486 53039515 ~ 53040495 (+)
G817221 NA non-coding upstream 164507 53038129 ~ 53038474 (+)
G817215 NA non-coding upstream 169623 53033139 ~ 53033358 (+)
LOC110532366 NA non-coding upstream 541935 52659674 ~ 52663309 (+)
G817021 NA non-coding upstream 548055 52654659 ~ 52654926 (+)
G817307 NA non-coding downstream 40549 53255311 ~ 53256967 (+)
G817278 NA non-coding downstream 53178 53267940 ~ 53268576 (+)
G817374 NA non-coding downstream 179147 53393909 ~ 53426571 (+)
G818719 NA non-coding downstream 477511 53692273 ~ 53692710 (+)
LOC110532368 LOC106572016 other upstream 475461 52692676 ~ 52734929 (+)
LOC110532349 LOC106591969 other upstream 877341 52323001 ~ 52325924 (+)
G815767 casz1 other upstream 1856487 51345372 ~ 51346494 (+)
G815610 NA other upstream 2124039 51078447 ~ 51078942 (+)
G815428 NA other upstream 2402600 50796214 ~ 50800381 (+)
G819897 NA other downstream 1512109 54726871 ~ 54727376 (+)
G820665 NA other downstream 2018496 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 2316275 55531033 ~ 55647541 (+)
G820944 NA other downstream 2482878 55697640 ~ 55697978 (+)
G821363 uhrf1bp1 other downstream 2759280 55974042 ~ 55975316 (+)

Expression


Co-expression Network