LOC110532391 (LOC106571996)


Basic Information

Item Value
gene id LOC110532391
gene name LOC106571996
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 53596083 ~ 53676213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616263.2
AGAGGCAGGGAGATATAGCACCGGGTGATAACACTGCACTCTCTCTTCAAATGACAAGTGCTTATTTTCCCCTATACCGCGCGCAGCATCTCGCGCTCATAGACTCACTCTTCCAAAATAACTCGTCTTCTCACTTGGTCTCctgtttcttttttcttttttaacCTATTACTTACATTAATTTGTTCAAAGATGTACGAAATGTGCAATTTTAGCCAAAGGTGACCTGTCTGCATGTCGAAATTCATCGGTGCATCTTTTCGGGGTTGACTGTTATAACCGTCCAAACTGGGTAGGCTATCTATCCCGATGTTTTGCGATGCTCTGCCTCTCAGCAATTTAGAAAAGTGCGTGGTCATTTTCAGCGCCGAATCCACAGATGCCGCCGACGAATCACCTTGCCTTTCCGGTGTAATTTTTCACAGCCCTTTGACTGTCCAGTGGAGTAAATTCGATGATTTATATAAAGACAAAGTTTGACCGTCACAAGTGGTCAGCGGGCACCTTTTGGTAATCGGACAGTGGACGGACCACCTGTCCACGGGCTCGGTGCGTCCTTATCAAATTGAAGGAAAGATAATTGCAAAGTCCAATATATTTGCATCGTCTCGCCTTTGGTGGTGTAATAGCAGGATTTACATCATATCTGGAGTAATTTTATGTGCGCAATATTGAAGGATATAGCCTTAGAATGTTTGCATTAATGACATTTGGAGTAAGGTACATCACTTGAGTGTATTAGACACTATAGACTTTTGTGGAAACCATCTAAATGTGAGGAAACCTGGAAAACTGACTTGTTGTTGAGAAAATTTGGATAAAACGGTCTATTGCACGCAGtCCGATGTCTGCTCTACGGCCGGGGAGCTGTCTAGGGCGTCAGGTGTGGATCCTCCTGGCCATGACCCACCTCACCCTGGATTTCTCCCTGTGTAGCCCCCTCAGTCAGGGCCTGGGGATCAAGCTCATCCCCAAACCTGTGCCTCGCCCCCGGCCCCACTCGGCGCCCCTCTGGGAAACTCCCAACATTCTCCATTGGAGGACTGTGAGCACTCTGGCTCACCGGCTCCTCAACCCCGTTCCACTGCCAGACAGCAGGGGAGGGCCAGTGCCAAAGGTCAggggtcaaaagtacaggagactGGCACACAAAGGACAGCCATGTAAGGAGTGCCGGTTGAAATACACATCCACCGAGGTGGGGGATTCGGCAGCAGCGGTAGGTCTTCCCAGGGGGAGCAAAACAGACGTGGTGAGGTTGTTACGGAGGGCTCGGAGACAGCTGAAATGGGACGCCGACGACAAATCTCAAGATGGCAGGACCACGACTGTGGCCGGATATATCGACTGGGGACCCACAGGGACGGAGGACAACTTTGACGATGGTGAGGGGAAAACGGCAGCCAACTCCACACTGTCCACCAAGGCCTTGACCACTACTGtggccaccaccaccactaccaccaccaagaGTCCACAGAGGACGTTCGCAGTGGTGACCACACCACACCCTAGGATGCTGAGCACCACCAAGGCCAGCGTCAGTTTAGGGGAGACTGTCAAACCACCAAAGCCATATGGAGACACACCAGGTCTGGCAGTTCACCAGATTATTACAATCACTGTGTCTCTCATTATGGTCATTGCAGCCTTGATAACTACACTTGTCCTTAAAAACTGTTGTGTACAGTCGGGGAATGGCCGTCACAGTAGCCATCAGCGGAAGATCCACCAGCAGGAGGAGAGCTGTCAGAACCTGACCGACTTCACCCCTGCCCGCGTGCCCAACAAAGTGGACATCTTCACCGCCTACAACGACAGCCTGCAGTGCTCGCACGAGTGTGTGCGCACCGCCGTGCCCGTCTACACAGACGAGATGATCCAGCAGACCCCTATATACAAGACCACCTATAACGGAAATAGACCTTCTCCCACTGAAAGGCAGCTGATTCCTGTGGCCTTTGTGTCAGAGAAGTGGTTCGAGATCTCCTGCTGACTATCTGAAGCCTTTTTTACATCACGTCGATGGAACAAACTTCCTGAATTTATGCTCTGGATCCTTTGGTAAACTTTTCCAACCAAGATAAAGAAGCGACTAAAAACGACACAGATGAAGATATTTATTTTTCTATAGATGATGACAAACCAAGCAGCCATACCGCTGCCACTCTATACTATTTTCCAGAGACCTGTGTTAATTTAGATATCTAGTTAGAGTTAATATATAACTACATTACTGGATGTGCCAGAGAAGACCATCTACGTCAGCGTCACCTTGAAGGGGACTAGGTTTCTTGGAGAGCTAGGAGACTTGGAGGATCTGCTCTCAGTGGAAAAAGCTGAGCTGTATTACTGAACAATGTGCCAATTACGCCACTATGTGCCATAATCTGTACAGAACAACAATTAATGGACAACTAAagacagtgctatattaaccttGTATCAAACATATTCTTTTTAaagaaaaatgaagaaaaaaatatgtttaaagtATTTGAATATGTTTTCTGAAATAGtcgaaaaaatatatattatatgaaGCACTAATCATTGAGGGGGGAAAGAAAAGAAAACGGTAAATGCTTTAGTCAACACCTACATTTAATGCATTGTTACTATGTCCCATTTTAAAACCAGAGTAGTCTGTCTATTTTTATATACGCAAAGAGGTCAGTCAGTCAGAAACCAAACAGTAGAATTCCATGCCACATGATGTTTGGACAGCGGAACGCCATTAACAGTCCAATCAGTGATCGAATCCAAGCCCAGATTATTTTCCCTTTCGCTATGTCCTTTTTGTCAGAGGTTTTGGATTGTGCTAACTACATAAAAAAAAGGGCTCTATGGCTGTGGAACATTGCATACCCTATGTCCTGTTGTGTTCAGTTCTATCTGAATTTGAATAGCTAAAGCAAACAGAGAGGATTAGCAGTATGTTTACTTATGTACTGACTCAGGTCAGTGTCCAATACACAAGTCTTCATTCCATTTTCCATCCCAAGCATTATTCACAAGGGATAAGACATGATGAGTTATTTTGAGTGGTGGTAGGATATGAGCGGTACCGCACAAGGGTGGAATTTAGAATTAACTTGTAAGAATAGAATTATTCTAACTCAACAATTACAGTAAGTGAGAAATATTGAATATCTCCTCTGAACTATATGAATAGTCAGTGTTTACCACTGTTTCCCAGTGTCTAATTGCAAATATTTGTCTTATTAGTCTTAAAACAACCAAGGGTCAGATTTATCAAACAATGCTCCTAAGGCCACTAATAAGtgtgatttgtgtgtattattggGGGAATCACAATACCTTTTTGTGTTGCATTTATCAAGCACATCCTAATtggaattataattataatattaTCATTAAACACCTTTACAAATTGTGCCCTGTTCGAGAGGTATTTACATTCAGGAGTAGTATTTTCAATACCATAATCTCAGAAATGGAAATGAACAGGACATCTGAATAAAAATGGTAAAGTATTCCTCCAAATTAGGTCCAAATTAGCTGTATATCTTGGGCTGTGAATGCAGACACAACTATTTTTAATAATGTTCCTCCCTAAAGCTCACTTATATGAAGGAATACACTATCTCTCTTTCATGTCAAGTGCAGTACAGTGAAAAACAACCATGTTCTTTCCTGGTTCCTGAGGGTTGCTCATAGATGCGGTTTTGTTGAACATCAGCCTCGTTTTAACCTCCAGCATCATCAATGAGATGTGGAACTAGGGGGATTAGGAGCAGCCAATCAGAGTCTAGAAGACTGGGCCACATGTTATACATTAATTAATTGATTAGTTCATACAATTCCACTGTTAGTGAGTCAGGACACTTGAACATAACACAAAACATTTCATTACGCTAGTGGGTAGGTAGAAAGCACAAAAAAGATTGCAATTATTCGGTGTCGACAGCAATATGTACATATTTAAAGATGGACTGGATTCTTGTCCGGATGTGGGCTGATATCTGCACTTACTCAATGAGATGGACAAGATTCAGCCTTCAGCTATTCTGTTTCCAGAGCTCAAGGTAGAGGTGGACCCATAGTACAGATCCTAAATCACAAGCTTATGTAACTGGAGGGGTAAAGAACTGACCTTGGATCTGTGGCTGTGGTGCAACTGTGACTCCAAGTACACCACTCTCACAGCAAAACACCATGAACGACCATGCCAATTCATCCAAACATGTATGCTGAGACCAAGTTGCGTCAACATATATTTTTTGAACAAAAAGTGTTATCTTGATAGTCAGAGGGTTACTAAACTGTATATTATACATGTGTAAATGTATTTTCTATATATTTACTTCTATTTGTGTACAGGTATGTTCTATTTTTAAAGACCTGTCTCTTTTTGGGAAAGGTTTGGCTAGGTCGGGATAGTGTCTTTGTTTACATGTGAACTACCGTATTTCTTTCACAACACAAAATAACCTTGTGCCAAGCTTCCTACCTGCACTTTCAAGCTGTACCTGTATTATATATTTGGCTAATCAATACAATACTTAAATAGACACTGCAATATTTCACATACTGAAAAAGTTGTTAGAAGTAACAAAGCTAGGGAGAGAAGGTCTTTTGATTGTATACTATGATGAGATCGGCGTGCTGATGCTTGGGGTTTGGTTGGTAGAAGATGCGCAATTATCAAATGCTGACAAACCATTTTCATATGAAATCTATTTGCTTCTGGAAATATGATTAGTCATGGTGAAAAGGGGAAGTAATGTAAACCCAAGAATAATTGTTATGAGAGAAAGTTAGACTGAGTTAATTTTTGGTTAATTTTTGCTGTAATATTTAAAACTACATGTAACCACTCTAGAGACCAAGACATATGTGTCAGTTTTCTCTTTAAAGGCAGGGAAAACTATTAGGCCAATGACCTTGTACTATTTAGCATGAGTTGAAACCACAGATAAATGATCAGAAAGAAGTACAGTAGTAAAGAGAACAAAGAATAAGGGTTCAGGGTTTTTAGGGTAAATATTTCACTCCCCTTTGCATTTGCAGAGAACAAGTACATGAACAAGGATTTTTATGTTTTGGTTATGCTGGTACTGAAATGTATCGGGTATGTACTTATTATGTCTTTCTTTCATATGATGATGACAAACACCACCAATGTTTTGCTACAAAATTCTCCACTTTCATGAACATCTTCATGATCAGATTTTTAGATAGCGCTGATTGTTTAAAGCCAGCTGCATACTACACCATTATTACCTCAATATTTTAAAGGAAGTTTGGAACATCATAGGAATATAGGGGGCACAATTTCTTTAATGTGAAAGGTTTCCTCGAGTGCTGTCTACAAGCCTCAGATGTTCGAATATCCTCCCAAGCATTGTCCCCAATGCGCATTTCTTAAATTTCTAATATACTTTCAAATTGTTACATATGAAAGTGTTGTCTtgaaatacactacatggccaaaagcatgtggacacctgctcattgaacatctcattccaaaatcattggcattaatattgagttggtcccccctttgctgcta
>TU929796
TGACAAACCATTTTCATATGAAATCTATTTGCTTCTGGAAATATGATTAGTCATGGTGAAAAGGGGAAGTAATGTAAACCCAAGAATAATTGTTATGAGAGAAAGTTAGACTGAGTTAATTTTTGGTTAATTTTTGCTGTAATATTTAAAACTACATGTAACCACTCTAGAGACCAAGACATATGTGTCAGTTTTCTCTTTAAAGGCAGGGAAAACTATTAGGCCAATGACCTTGTACTATTTAGCATGAGTTGAAACCACAGATAAATGATCAGAAAGAAGTACAGTAGTAAAGAGAACAAAGAATAAGGGTTCAGGGTTTTTAGGGTAAATATTTCACTCCCCTTTGCATTTGCAGAGAACAAGTACATGAACAAGGATTTTTATGTTTTGGTTATGCTGGTACTGAAATGTATCGGGTATGTACTTATTATGTCTTTCTTTCATATGATGATGACAAACACCACCAATGTTTTGCTACAAAATTCTCCACTTTCATGAACATCTTCATGATCAGATTTTTAGATAGCGCTGATTGTTTAAAGCCAGCTGCATACTACACCATTATTACCTCAATATTTTAAAGGAAGTTTGGAACATCATAGGAATATAGGGGGCACAATTTCTTTAATGTGAAAGGTTTCCTCGAGTGCTGTCTACAAGCCTCAGATGTTCGAATATCCTCCCAAGCATTGTCCCCAATGCGCATTTCTTAAATTTCTAATATACTTTCAAATTGTTACATATGAAAGTGTTGTCTtgaaatacactacatggccaaaagcatgtggacacctgctcattgaacatctcattccaaaatcattggcattaatattgagttggtcccccctttgctgctataacagcctccactcttctgggaatggtttccactagatattgtaacattgctgcggggacttccttccattcagccacaagagcattagtgaggtcaggcactgtggttgggcgattaggcctggctcacagtaggcattccaattcatcccaaaggtggtcgatggggttgaggtcagggctctgtgcaggccagtcaagttattccacaccgatcttgacaaactatttccgtatggacctcgctttgtgaatgggggcattgtcatgctgaaacaggaaagggccttccccaaactgttgccacaaagttgtaagcacagaatcgtctagaatgtcattgtatactgtagcattattcctcatccaccaaactttacagttggcactatgctttgGCGTAGGTAGCaatctcctggcatccgccaaatcaagatttgtctgtcggactgccagatggtgaagcgtgattcaccaCCCCAGAGAATGAATTTCTACTGCTGcacagtccaatggcggtgagctttacaccactccagccgacgcttggcattgcgcatggtgatcttaggcttgtgtgcggctgctcggccatggaaacccagttcatgaagctcccgacaaacagttattgtgctgatgttgcttctagAGGCACTTTGGAACTccgtagtgagtgttacaaccgaggacagatgatttttataaTTTTTGTCAacaacgagtgtggctgaaatagctgaaaccactaatttgaaggaaTGGCAAAGTAAATGGTAAAGTAAATGTAACTTGACATAAGCAACTCACAGTTCCCTCAGTTCAGTTCATCCCTCAGTGTGAAATATCAGTGCCAACAACAGCACCCATGCTTCTCTGTAGGTAATGTGGACGTAACAGAGCTATTCTTTATTATATCTGCTGATTTTTCAGTTAGCCCATAGTGGTTGAGGCAGTTCAATTGACTGTTGAAGAGGACTAATGGAGTTGCAGTAAGATCAGAGAAATATGAGACTGAACAACTTTTGTGAGCAAACAAATATCTACATAAGAGACAGACTGTATGTCCTCTAGCTGTCTCTTCAGTGATCCTTGACACTTATAGTACAGCATGTCCCCAATGTGTCACCTATGAGACAAACAAACTGTCAAGTAATGAAAGGACGCAGTCGGTGCCAGCAAGAGGAAAGGTGTCACACATATTGTGCTGTATTTTGCTTCATGTTAATAATCAGTCATATTGATTCCGACCTTTTGACATATTCAGAACGTCAATTCCATGTTTGCCTGACATCTTACTGGCCCAATCTTTTTTTAATCTATGAGATAGGATCCAGAACTTGAATGATCAATCTGTTTTGAGTCTTAGTCTAATCACAGGCCAGGGGGTTCAGGCTCAAGGTATTTCAATATGGCACTATATTGTTAGGGAACATATTATTATAATAAACATTGTGAGTAGCCTAGCAACGACTGATTGATAGCACTAGAATTAATCTGGCCAGAGGCTAATTACGGTACAGGGGGATACTGATACTCCTTGTTGTTCTGAAATACTTAAGAGAAAGGGGATAAATGCGTGATGTTTGGATTGTTTTTGGGTGCATATTTTTGCTTTACACAGGGTCGTTCATTCTCAAACTGCTTTCCTCATCATGTTTTTATGACTTTACATATTGTGCGCTTAAACTGTGTCTAAAGAGGAGGACTCCAATTCTCCTTGCGgatcatgtttttatttttctattcAAAAGAGCTATTGTACTGATATAATCACCAGTGTTTGTCAACAGTGTTAATGACTTGAACTATGATTTAATGACGTCACCATTTCCTATATGGCCATTTTGGGTCAAGCAGAGTCTGGTTGCATTAAACACATTTGCCTATGAGCATAGCTATATGCCACAGCACAAAATAGGGCCTCAGACTGACACTCAGTTTGATGCCTTGAACATGGAGTCTATATTGATCTGGACTGGTTTAACATTGATATTTGAGATAGCACAGCTCAATCGATATATGGTTATCACTGGACAGGTCGTCAGATTGGAACAGAGTCAGCCGGGACAGTGAGACATTGCCTCAGCATTGCCTTGTCACTCTCTCAGAGCAGATGAAGCCAAACCGATATATGTCTGAGAGATATTGGTAAGATGTTTGTTCAGGTATTGAAATAATTTGCAAAGCTAAATGGTAGACAAACAAATATGTCTGACTGAGATGACATCTTTTTCTTTCTGGTGTTTCACACAGGTGCACACACCAGTTTGTTCAGCAACACAATCACAATAatccatactactactactacacagaaccTGACTGAAGTCTTGTTGTTGCCATAGAAATGAAACATTTGTACTTTGTGACTCTTAAACTTTTTATATTTGTGTTAAATATATCAATGAGTAAATCTGTTACTTTTATATATGATCTATCTATGACtgtagtacacacaaacacacacagaaggaCTGTATAAACAGTCCATATCTGTGTCAGCTAAATGTTGTATCATTTTATTTTGTGTCTTATGGATCACATCTCTTTTTGTAGGTATTGGTAATGTTTAAATTTACAGGTGATTTTGATTTGGTTACTATTGTACTTCTAAGCTCTGTATTTGCAAGCACTGTAAATGCGATTCTCATCGGATTCGTCCTCTGTACATTTAGTACTCTGATGTTcctataaataaaatgtaaaacaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616263.2 False 5542 mRNA 0.42 6 53596083 53673498
TU929796 True 3578 lncRNA 0.39 1 53672636 53676213

Neighbor

gene id symbol gene type direction distance location
LOC110532390 gbrd coding upstream 170390 53404905 ~ 53425693 (+)
LOC110532385 LOC106572000 coding upstream 381321 53202981 ~ 53214762 (+)
LOC110532383 LOC106572002 coding upstream 441955 53128438 ~ 53154128 (+)
LOC110532379 LOC106572005 coding upstream 474219 53043077 ~ 53121864 (+)
trnaa-ugc-36 NA coding upstream 602145 52993863 ~ 52993938 (+)
LOC118966073 NA coding downstream 558251 54231749 ~ 54233447 (+)
LOC110532392 dffb coding downstream 561298 54234796 ~ 54239506 (+)
LOC110532396 LOC106571991 coding downstream 571825 54245323 ~ 54249584 (+)
LOC110532395 LOC106571990 coding downstream 621524 54295022 ~ 54306173 (+)
twist3 LOC106572367 coding downstream 1253230 54926728 ~ 54934570 (+)
G817374 NA non-coding upstream 169512 53393909 ~ 53426571 (+)
G817278 NA non-coding upstream 327507 53267940 ~ 53268576 (+)
G817307 NA non-coding upstream 339116 53255311 ~ 53256967 (+)
G817222 NA non-coding upstream 555588 53039515 ~ 53040495 (+)
G817221 NA non-coding upstream 557609 53038129 ~ 53038474 (+)
G818719 NA non-coding downstream 18775 53692273 ~ 53692710 (+)
G818733 NA non-coding downstream 27546 53701044 ~ 53701493 (+)
G818737 NA non-coding downstream 29886 53703384 ~ 53703594 (+)
G818740 NA non-coding downstream 31132 53704630 ~ 53704834 (+)
G818944 NA non-coding downstream 197319 53870817 ~ 53872027 (+)
LOC110532368 LOC106572016 other upstream 868563 52692676 ~ 52734929 (+)
LOC110532349 LOC106591969 other upstream 1270443 52323001 ~ 52325924 (+)
G815767 casz1 other upstream 2249589 51345372 ~ 51346494 (+)
G815610 NA other upstream 2517141 51078447 ~ 51078942 (+)
G815428 NA other upstream 2795702 50796214 ~ 50800381 (+)
G819897 NA other downstream 1053373 54726871 ~ 54727376 (+)
G820665 NA other downstream 1559760 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 1857539 55531033 ~ 55647541 (+)
G820944 NA other downstream 2024142 55697640 ~ 55697978 (+)
G821363 uhrf1bp1 other downstream 2300544 55974042 ~ 55975316 (+)

Expression


Co-expression Network