LOC110531203


Basic Information

Item Value
gene id LOC110531203
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 54005547 ~ 54065096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989284.1
AGTATCCAAGATAATTAATTGTTTACTTTTGCTACAGCTACAGTACTTAGCATTATTCTCCTCAAACTTGACCTTTTTCGATATAAAACCTCCACTTCCCTTTGTTGTCCACACTCCCCTCACTCCCCCCAACCAGCAGGTGAGATTCAGGACAGAGGACGACAAGCCGCTGGCCATCTTCCAGGTTAGATCGGAGCCCATGCCGCATGCTATCGACCAGAAGTTTCGCTTTTACAAGCCAGAGCTGTCCTTCCTGAAGAAGGCCCTGCGCCTAACCCCCTGGGAAAGAACACCAGTTGGAGACACAGATGCTGGGTCTCAGTTCTTGGTGGGCTGCAGTGACACCAATGTCATCTTTGAAGCAACAATGTTGGTGGACCCAACCtgtaggtgcgtgtgtgtgtccattctAGGCAGGCAGCCACTTCTGCTACCTCACCATGGTGGACATGGAGCAACAAACGCTGGTGGCCTCCTGGCTTCTCAGCTTCACTTGTCGTCTTCCCTTCCTGTCCAAGGCCTTTGAAGTGTGCGCCCTGGTGGAAGGGGGCAGGGAAGATCACCTACACCTACAACAACCCCTACCCCACCAGCCATGTCCTCCAGCTGTTTTCCTCGCAAGGTGCCAAATAAATGTCACTTAAgggccccaaaaggctagggccggctcAGACTGCACTTGTggatatggatgtgggtatgcagaCCCGGCCCTTCATGatgagttctgtttttttgtgggcCCCACCTCCATCAAAGTTGCCTATCCCTGCAGTAAAAAATAGGAAAAATCCGGACTGACACAGGAAGGGACTACCTTTACTTTGTCCAATAAGAAGAGCTCATTTTAATTTACTGTTGCAAAGTTTAAAAACGGTTTCCATTCCGTGCCCTAATAAATACAATTTGCTAACCACACTCAATCTCTTGCTGGGAGAGACCAGTGAGGGACACTAACACGTTGTTTGTTTTGTATGACGTAATATGAATAATTTAACACGTCCactatactgtagctgttaaTTTATTTTTCTGTTCCGCCATTAGCCCCTGTGTCTAGTAGGAGATTCATTGACTCCATAAACAGGTCATAAACATCTCAACATAAACAAGTTGTCTCGAAATCATTAGCAATCAACGGTGTAAATGGAAATAGAATCAGTCCGTTTCAATGAACGGGCTGTCTATATAAAATGAACTCCTAAAAAACTGTTTATGTTTCAATCACTTGCCTGCACAGGATACTTAACCAAATagtgagggaaagagggagagacgggtGCGAGAAAAATAACCAACTGTGTTTTCCTTTTAGCCAGCATAGCTTCAGGTGCAATTCTTCTAAACAGTTTATGGGGTCTATatcttaaaaaaatgtaatagagTCGTTTGCCTTCCCCCAAGAAGTAACTACCCTGCcacaataaaaacaaaaaaacagagcaaggATCGATATATAGTTTTCTGGAAATTACTGAATAAATCTTACACATTTGGAGGgagaaaacaacaaaacaaaggcCTTGTCTTTTCAAGAGTTTAAATAAGGTGGGAACACCAGGAGCTTTTGTTGAAAACAATTTCCCTTTTTTACATAATTATATCATTTCCTATAATTAGTCATTTACAACGGCatatttattgttgttgcattgcaCACATCCCTAATAGATGTTGTGTGTTGTAATTTCAGTCAAACGTCACGGTGTGAATATTGCCTGAGGACTGTAAATGCAGTACTAGTACACTGGTGAAATACACCTAAAAACACATCACATATATTATGGGATATTAGGTTAATAACAGAAGAGCTGTGTCCATGGTCTGTTCATCTGTTCAGTAGGACACTACGtcgcaaaacattttgcaatggaacACAAAAGCCTGTGATctcattggacaagttcaggtggAACCTCCCCGACTGAACAGACTGCAACAGTGGGCCTGTGGGTTGAACCTGGGTGGTATTCCTTATGTCACCTGACAAGTTCAGGTAATCCCTCCCGATTTCTGTCTGTTTAACTTCTGTTTGGTACCTAATGAAATGCACCTGAAAGCACAGCAAACTCAACTCAACTGGACACATtagctactactacaactacagaACAAAATGGTTTGCTAAGAATGTCAGCTCAACGAAGTACACTTCTACTATTGTATAAAATTCAACACTTTGCTACTTATGACAGAAAGCTCAATGCAGTACTCTTTACAGACATGATGGCTTGATACATAcactcagtttattaggtacacccatcttgTTCCAGGTCGGACCccttttgcctccagaacagactgaattctttggggcatggaaacgttgctcaattggttTCAAGGGCAATGTTCCCTCAAGCCTATATTAGCCGGTGGTGTTCAATGCAGGTGACtttttacattatgaagggctCAACATTAACTGATGATTAACATTGTTTTGGTCTGTAACACCATGGGCCAAATAAGGGACTGTAAAttgcattgtattgtattttatgatgcaagaaaccaccttgcaaaataaatgttttattattaccAGAGACAATTAAACAATGTAG
>TU931625
ctgagttttgctcgcgcaacagaatttggataggtattgcttttccctctccttctgataaagacatttgcggttgatatattatcgattatacattttaaaaacaacctgaggattgattataaaaaacgtttgacatgtttctgtggacattatggaaactatttggaattttcgtctgcgttgttgtgaccgctctttcctgtggatttctgaacataacgccacaaacaaacggaggtattttggatctaaaaataatctttatggaacaaaaggaacatttgttgtgtaacagggagtctcgtgagtgaaaacatctgaagatcaaagGTGAGATTCAGGACAGAGGACGACAAGCCGCTGGCCATCTTCCAGGTTAGATCGGAGCCCATGCCGCATGCTATCGACCAGAAGTTTCGCTTTTACAAGCCAGAGCTGTCCTTCCTGAAGAAGGCCCTGCGCCTAACCCCCTGGGAAAGAACACCAGTTGGAGACACAGATGCTGGGTCTCAGTTCTTGGTGGGCTGCAGTGACACCAATGTCATCTTTGAAGCAACAATGTTGGTGGACCCAACCtgtaggtgcgtgtgtgtgtccattctAGGCAGGCAGCCACTTCTGCTACCTCACCATGGTGGACATGGAGCAACAAACGCTGGTGGCCTCCTGGCTTCTCAGCTTCACTTGTCGTCTTCCCTTCCTGTCCAAGGCCTTTGAAGTGTGCGCCCTGGTGGAAGGGGGCAGGGAAGATCACCTACACCTACAACAACCCCTACCCCACCAGCCATGTCCTCCAGCTGTTTTCCTCGCAAGGTGCCAAATAAATGTCACTTAAgggccccaaaaggctagggccggctcAGACTGCACTTGTggatatggatgtgggtatgcagaCCCGGCCCTTCATGatgagttctgtttttttgtgggcCCCACCTCCATCAAAGTTGCCTATCCCTGCAGTAAAAAATAGGAAAAATCCGGACTGACACAGGAAGGGACTACCTTTACTTTGTCCAATAAGAAGAGCTCATTTTAATTTACTGTTGCAAAGTTTAAAAACGGTTTCCATTCCGTGCCCTAATAAATACAATTTGCTAACCACACTCAATCTCTTGCTGGGAGAGACCAGTGAGGGACACTAACACGTTGTTTGTTTTGTATGACGTAATATGAATAATTTAACACGTCCactatactgtagctgttaaTTTATTTTTCTGTTCCGCCATTAGCCCCTGTGTCTAGTAGGAGATTCATTGACTCCATAAACAGGTCATAAACATCTCAACATAAACAAGTTGTCTCGAAATCATTAGCAATCAACGGTGTAAATGGAAATAGAATCAGTCCGTTTCAATGAACGGGCTGTCTATATAAAATGAACTCCTAAAAAACTGTTTATGTTTCAATCACTTGCCTGCACAGGATACTTAACCAAATagtgagggaaagagggagagacgggtGCGAGAAAAATAACCAACTGTGTTTTCCTTTTAGCCAGCACAGCAAACTCAACTCAACTGGACACATtagctactactacaactacagaACAAAATGGTTTGCTAAGAATGTCAGCTCAACGAAGTACACTTCTACTATTGTATAAAATTCAACACTTTGCTACTTATGACAGAAAGCTCAATGCAGTACTCTTTACAGACATGATGGCTTGATACATAcactcagtttattaggtacacccatcttgTTCCAGGTCGGACCccttttgcctccagaacagactgaattctttggggcatggaaacgttgctcaattggttTCAAGGGCAATGTTCCCTCAAGCCTATATTAGCCGGTGGTGTTCAATGCAGGTGACtttttacattatgaagggctCAACATTAACTGATGATTAACATTGTTTTGGTCTGTAACACCATGGGCCAAATAAGGGACTGTAAAttgcattgtattgtattttatgatgcaagaaaccaccttgcaaaataaatgttttattattaccAGAGACAATTAAACAATGTAGG

Function

NR:

description
nephrocystin-4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989284.1 False 2570 mRNA 0.42 4 54005548 54013544
TU931625 True 2024 TUCP 0.43 6 54005547 54065096

Neighbor

gene id symbol gene type direction distance location
LOC118966187 NA coding downstream 438403 53558196 ~ 53567145 (-)
LOC110532389 LOC106571997 coding downstream 692217 53262610 ~ 53313331 (-)
LOC110532386 nadk coding downstream 749035 53217070 ~ 53256513 (-)
LOC110532384 s35e2 coding downstream 803179 53180016 ~ 53202369 (-)
LOC110532381 LOC106572001 coding downstream 825573 53151842 ~ 53179975 (-)
LOC110533021 NA coding upstream 90381 54103925 ~ 54107261 (-)
LOC110532394 LOC106571994 coding upstream 228868 54242412 ~ 54244522 (-)
cep104 cep104 coding upstream 234182 54247726 ~ 54294920 (-)
smim1 NA coding upstream 295071 54308615 ~ 54310043 (-)
plxna1a LOC106572368 coding upstream 504665 54518209 ~ 54797805 (-)
G819096 NA non-coding downstream 51539 53953803 ~ 53954009 (-)
G819053 NA non-coding downstream 67807 53885832 ~ 53937741 (-)
G819036 NA non-coding downstream 70363 53865927 ~ 53935185 (-)
G818892 NA non-coding downstream 202858 53802370 ~ 53802690 (-)
G818720 NA non-coding downstream 312836 53692273 ~ 53692712 (-)
G819288 NA non-coding upstream 94454 54107998 ~ 54108328 (-)
G819321 NA non-coding upstream 117270 54130814 ~ 54131043 (-)
G819573 NA non-coding upstream 218043 54231587 ~ 54231826 (-)
G819574 NA non-coding upstream 218348 54231892 ~ 54232100 (-)
G818117 NA other downstream 1273925 52727167 ~ 52731623 (-)
LOC110532367 LOC106572017 other downstream 1336828 52663417 ~ 52668762 (-)
G817848 NA other downstream 1851906 52153282 ~ 52153642 (-)
G815045 NA other downstream 3785700 50218867 ~ 50219848 (-)
G815044 NA other downstream 3786851 50218356 ~ 50218697 (-)
G820398 NA other upstream 740704 54754248 ~ 54754641 (-)
G820738 NA other upstream 1295334 55308878 ~ 55309236 (-)
G820757 NA other upstream 1305864 55319408 ~ 55320016 (-)
G821013 LOC106572358 other upstream 1408999 55422543 ~ 55423559 (-)

Expression


Co-expression Network