XLOC_026733 (tmed1a)


Basic Information

Item Value
gene id XLOC_026733
gene name tmed1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 47222096 ~ 47235997 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052056
ATTTTCTCATATAGCACTTATGTTTTCCCATCCAAACATCAATTGAAAGCTTGTTCAGCTTTCAGGTGATGTATATGAAACTCCATTTGAAAAATAAGTGACCCTCCAGCATTTGTTAATGATTTTGTGGTACAGGGTCATATTTAAACTTAGGTTTCAGAGTGCGCTACAAACAGCTAAATCAACATTAAAACATGATGAGTTGAAAAGCTTCCTGTAGCTTTGGAAAGCTTCTCGACGCAACAAACGCGTACAACACTTTGACGTCGGAACACAGTTAACAAATCAACGACAGTGTTTGCGCGTTTTACGCGACGCAGGAAAACTGCAACGCGTCAGTTATTAACGAAGCTATCAAACTTCACGCGCGGCTGTTTGTCATGTAGGTTCACGGGAGTCCAGACAATGCGCTCGCGGTGAAGTTTGGCAATGATAGAGTCCTGGTGAGGTCGCGTCGCTTGCAGTGCACACTGCCTGTTTGATACAGCTGCTTAAGTGTGTTAGGAAGAGCAAAAGTCATGGACGAGACGCGTCTCGCGGTTTGTTTTCTATCCTTCCTGACGCTCTGTCTGGATTTGGGATTCACTTTCGGACAGAATAAAGACACCGAGTTCACCTTCCTTCTGCCTGCTGGAGCAACCGAGTGCTTCTTCCAGACGGCCACCAAGAACAGCAGCATGGAAGTGGAGTACCAGgTGATCGCAGGCTCAGGACTGGACGTGGGCTTCACTCTGATCTCCCCCCGGGGGTACAGACTGGTCTCAGACTTCAGAAAATCTGACGGCATCCACACTGTTGACTCCACTGAGGAGGGCGACTACCGGATCTGCTTTGACAACAGCTTCAGCCGTATATCGGAGAAGATGGTGTATGTGGAGGTGATCATGGATGGACCAGAAGGagaggatgaggatgatgaagacTGGGCTGCTTTGGCTGAACCTGAGGACTCACTGGAGTACAAACTGGAGGATATCAGGGACTCGATGGACGCAGTGCACAAGAGCCTGGAGCGAAGCCGTCAGCTTCAGACGACACTGCGGGCGTTCGAGGCTCGTGACCGATACCTGCTGGAGGATAACCTTTGGCGCGTCTCCTTCTGGTCCTGCGCCAGTCTGCTGGTGATGATCAGTGTGGCCCTCACACAGGTCTACACGTTACGCAGATTATTCAACGACAAACACAAAGTTTGCACATAGCAGAGTTGAACACTGTAACACCCAATGCACTGCTTATGCCAAATATTAAAAGGATGGATTCTGGACACTCTCAGGTCCTAACTAAACACTCTATAAAACTGTGAGGTCTTTAGAGATATCAGTGAAATCTTGGAGTATTAGTTAAActtgttttagttttaataagAAGAGTATGTAGCAGCAAACACTGGTGAACACAACATTTATTTGAATCACTGTACAGACATTTGAATGTGAATCTAATTTGGATTTGacttttaaaacactgcagttaAAATCATTTATGTGACTTAATAACATTTGCTAGTAGATTCCTTATAGGATTATGtggtataaataaaaaaagaaataatgcaagtaatagttttttttttaatggctttATTATACATCAGCATCTTGTTTGAAACACAAAATGGGTCGTTGCTGTTATTTTGCATCAATTCATGACTAGACTAAGTTATTACTCCGATTCATAACACTACTTTCAAGACTGCCATCATTATTCTCTAATGCTGATTCATTTCCAGTATTTCTAATGTTCTTACATCACCTTGCAACAATATACAAATATTCTCATTAACCAAGTCACATTTATGTACAACCATCTTCATCATTGTAAAAACTACCTATAAATAAGTGTCCCTAGAGATTCACATAAACGTCATGGTGCTCCATTTATGAAGCATACACATATTTGGCACTAAGGTCATTCTTTGCAAATCAGGAAATTAAATCTGACAAAGGCTGTTAAACAACAAAGCCAGTTGCTCACCAGAATCGAGGCATTAAAAGATTAAAAGGATAATATCAGGCCACACATCTTCATCTGCTGTCATTGCATTGTGTGTGGCATTTTGACGTCAAACAAGTGACTACTGAAATGAGTGCTGGAaatgatttgtgtttttttttaaaggtcagATGCTGGAGTCTTGTGATTAAATCTGGAATTTGATTTCATGCTTTCAAAATTGAATGTACATTACCTGACAACAGTTAGGTTATTTTAAGTttttggaacaacaaataataacttgacttgtagttgatcatttggtatcataagtggcttatatgaaaggcaaaggcctctgaattatgcttattttattgcaataaattTTGATCATGAattgatttaattgtttaattaggacagtaaggtctgactttacttagactaaagtcttgtcacttgtCACTTATCTCTGCTATGATACCTTCTACTGCAAAATAACTTTCTACTAATAACTTTCTACTATTCATCATCAAATAACTAATCAtctggagcaaaaaaaaaaatcttgtaggactcccagagttcatagCGATCATTTGGATTCCCCTTCTAtgcctccttttttttttatcctaccccagacatgctcaataatgtttatatctggtgactgggctggccaatccaggagcacttcaaccttttttgctttcaggaactttgatgtggaggctgaagaatgaggaggtgcgctatcctgctaaagaatttgttatgtaatgggcagcacaaatgtcctgatacctcaggctgttgatgttgtcatccactctgtagatctttcgcatgcccccatactgatgcaaccccaaaccatgattttttccacaccaaacttgactgatttctatcagaatcttgagtccatgtgggttccactAGGTGttctgcagtttttgtgatgcagttcaatAGATTATTaatcggaaaaatctaccttctgccacttttccaaatgatcaactagaagtcaagttattatttgttgctcttacaactgggataaaCAGAAATACTTTTGTCAGCTAGTATACCATTGGAACAAATTTATTTCTTGCTACCAGTAATTAGTACATGTTGCAGGCTAATAAATGAATACTTTAGACTTCTGACATCAGCGAGAAAACTTCAGTTTAATTTCAACCTTTAGAAATGGTAaacctctcttgtaaaaaaaaaaaaagaaaaaaaaaatcactgcttatgtaaagtgtttctaatgcagcatctatgggaCTGAGAGTAAATTTATGTAAATTTAGTAAATTTATCATGTTGTTCTCTCCCCTGGTTGCCggcatcagtctcacacaatctttttcctttttcttaGTCTTGATAATACCATTGTGGCGTTCTTCTTTTATCAATTTAACAAACAggattgtaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattgttgttttctcCCATTCTCCAAGTTTActcaactatgacgacttctgctgcttaaaaacccggaaatgtgaaaagggtctatgtGCAGGGCGAGGTGGCCAAAGGACTGGAATTGTGAACCACTGGTGTAAAGGAACATTTCACACTTGTTTCATTTAGAAATGAGGTTAGTGCCACTTTTTACCTAGGGCTAACATAAGCCAGGTTGCATAACTGTAAGTTGTGGCACTATTATGGTAATTAGCCATTATTTGAAATACAagcaaaaacacaagcaaaaaaagatgtttgctaCAATAAACATAGGATgtgacatttaaagaaaaaaaaaagtttttttttacctttttaattgtgtgaaaatgttataaaatagAGCTTTGCAgagatgctgtaaaaaaaaaaaaaaaaaacattttttaaaaagtaggtTCCATAacgcagtgtttctcaaccacattcctgaag

Function

symbol description
tmed1a Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum membrane and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in myotome and yolk syncytial layer. Orthologous to human TMED1 (transmembrane p24 trafficking protein 1).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0007030 Golgi organization biological_process
GO:0030134 COPII-coated ER to Golgi transport vesicle cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-229 Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum membrane and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in myotome and yolk syncytial layer. Orthologous to human TMED1 (transmembrane p24 trafficking protein 1).

Ensembl:

ensembl_id ENSDARG00000031325

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052056 True 3938 mRNA 0.38 4 47222096 47235997

Neighbor

gene id symbol gene type direction distance location
XLOC_026732 NA coding downstream 25136 47194738 ~ 47196960 (-)
XLOC_026731 NA coding downstream 90985 47130032 ~ 47131111 (-)
XLOC_026730 qtrt1 coding downstream 94000 47114328 ~ 47128096 (-)
XLOC_026729 CR392045.1 coding downstream 116829 46919522 ~ 47105267 (-)
XLOC_026728 elavl3 coding downstream 404095 46800190 ~ 46818001 (-)
XLOC_026734 tnfsf18 coding upstream 45239 47281236 ~ 47294365 (-)
XLOC_026735 adgrl1a coding upstream 262436 47498433 ~ 47876427 (-)
XLOC_026736 NA coding upstream 591205 47827202 ~ 47833114 (-)
XLOC_026737 znf750 coding upstream 1017205 48253202 ~ 48259289 (-)
XLOC_026738 NA coding upstream 1087543 48323540 ~ 48328133 (-)
XLOC_026727 CR385086.1 non-coding downstream 459390 46757611 ~ 46762706 (-)
XLOC_026726 NA non-coding downstream 758840 46462585 ~ 46463256 (-)
XLOC_026723 CR450782.1 non-coding downstream 995086 46224589 ~ 46227010 (-)
XLOC_026739 NA non-coding upstream 1225500 48461497 ~ 48473754 (-)
XLOC_026745 NA non-coding upstream 1763906 48999903 ~ 49001293 (-)
XLOC_026747 NA non-coding upstream 1787903 49023900 ~ 49036782 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000033_00482628_00490027 TMED1A coding CI01000033 null 482265 ~ 490027 (-)