XLOC_026734 (tnfsf18)


Basic Information

Item Value
gene id XLOC_026734
gene name tnfsf18
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 47281236 ~ 47294365 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052057
AGGAAGCTTGACACATTCTGAGGTTTGTCTACGGGCCAACCAGAAGGCGAGAGGTTGAGGCCACGCTCAATCGACACACTGTCAATTCCAGCATCGGAGAACTCACCAGTGCTACTCACTCTTCTCTCACTACTGCATCATGTCTCTGTCTGCCGAACACTGCCGTGATACAAGTGGAGACaggggtggtggtggtggttttaATGGTGCTTTGATCCATCAGAGAACGCTGATTCGGGGACTGATCATATGGGTCACGCTACTCACTCTTGGCCTGGCAGCTTCAATATCTCTGCATTTCATCCCTAAAGAATCGCCGGCTCCAAGTAAACAGCAGGGTTCGGAAACAACCAGTAATAATGTTTATCCTGGAAAGAAAATAGATCTAATGACATTCACGCCAAACTGGGAAAACACAGATGTTGAGCTCCTGCAGTGGAATACAGTTGAAGAAAGGTTCATCAAAGGAGAGGGACAGCTGACTGTGACTCAGGGAGGCGCTTATTTTCTGTATCTCCAAGTTACCCTTGACTCGAGGAAAAAAGAAAACCACAcaatcacagtccaaacacaaaaacaaaatgtgatCTTAAAAGGTTACATCAATGGATCAAACCTCTCAACTGGCTTCTTGGCTACTGGAATTTACCTGGATGATGATGATACTTTTAATGTGACCTGCAAACCCAAAGCCAAAATCCAGAACTCTCACATTGAAACCTACATGGGTGTCATCAAGCTTGGCTAAATCTCAGTCAAGATACAAGACTGTGACAGTATGAATGTGGACTCACTGAATGTTGCTGTATTAAGCGTATGGCATTTAAATTTGGTatgaaattgttttttatttattgctcacACTGACATTTACAAGGCTCATTTGAATATATTGCACTATATTTAAGCTTTTCAACACACTTTGTGTCACCCGGTGTCCATGTGTGTAGTCGAATATTGATTGTCGCCCATGTAAAATTGGGACCCTGTTGATGCACTTTGTAAATAGAGAATCATATAGATAActattaagagaaaaaaaaaattaagtggccactctcagtttctctggatttacaattTATAGTTGCGTGTTTGACGAAAACGTAATTTGTGTTGATTCTGTAATCTAGCTACACGATTTCACAGCAAACTTTTTGATTTGTCTCTAATTCATATGAGATCGTACATCTCATTTGTACTATTCAGTATGACTTGCTCATACCCCAAttacggttgagtttaggggcggagttgggtgccacaccttctttttaaattattacatttttatacaacTTTACTCGTAAacattcatacgaattagccagtaaactgacaaaacgtaaaatacttatgagATCAGCATGAAACTACTGATATTTACGAtacttattataataaaaaagtgaaattacattaaaataagtcAATAGCATTAATTTAACTGCGAaagaaaattattttcttttttgtcttttaaaataCTTCGAGTTTTCTAAAtatagaaacattttaaaaatcaagaaGCATGTTAAAGACAAAATGTTTTGTCTAGATTTCAGAAATAAGTTTACGTTTcccttaaacaagctaaatattctAGCAATTGTAATAAGTCAAACTATATTGTGTTCAATTTTGAAatttgattattttgcttatttattaaattatttcatttataggattattccaccaaatatacATTTCTTAACTATTCTCATTTCAGAGGAGTTAAAAAAAATTGGTATTTGGTGGAAAACCCATTGTGATCCAACttaatctcacggcaatttgtaactttttgatttagtcagTAATTCTTATTTATTcacacaatctcatttgtacaactCATATTTAGTTTTCTACATATCTAAACATTTtcaaattaagaagcattttcaagacaaaatgTTTTGTCTAGCTTTTAGAAATAAGTACATGTTTcccttaaacaagctaaataatctagcATATGTGATAAGTCAAGCTATCTTGTGTTCGATTTtgaaatttgattattttagttattatttgaATGATTCCATTCATAGGATTATTTCACCAAAAACACATTTCGTAACTGTTCTCAATTAAGAGTTTAAAAATTcgtatttggtggaataacccaatacaaattatttagtggataatttgcatgaatttgtacaatttagtatgatttgcaatgacggttgggtttagggttgggttgggttatttattttttttttaattgtacattttcatacgagttaggaatttgtacaaattagccactaaactgacaaaacataaaatacttatgttttctcataCGATCAGGCTATTCTGTTCATAAATTAAATAACTAGCTATTTTTACCCACTGTCattttctggagaaaaaaaaaaggtgctctaaatgacagttgttttttttgttttgttttttttttatttagaacgAATGTCATTATATacctaaaacaaatattttatttatacccACAGCCAATAAGTTCAAAAAGACAACAGACAAGTGGcctcttaatttttttctatagtGTTTTTGTGCGATTGACCCTTTGCTAAGGTTTTAAATTATACTCACTTTGGTATTGTGAATTCTTGTGCACACTACAAAACCCAAATCAACAGAAAATGTAAAGAGAACAACAGTAAGTTAGAATATGTAAGTCTCTTTACTAATGTTCAATACACATTATTTAATCTACAacataaatttgtttaaaaaaaatttgccaTAGCACACAAAGTCCCCTTgtgcaataaaaaattaaattcttAGCAAAGGGTCGAACACAATggagagtgtcaaaatcttgaatTAACAAAGTGAAAATACAATGCTGAATTTTTAATAGCATGCTAAACTCACTTGATATGGCATCATAGCTTACTGATGCTATTTATGCTATTCGGCTTGAGGTTTTCACCAACAGAAATTGTTTGGTTGGAATATTAAAAGAGCAAACCCACTGAAAGGATGTACTAAATGTATTTGTGTctatttttgtgttattattattattgttgttgttgatatttttgttatatttatatgtatttatgccTGGTACTTAAAAATATGTGGTTGTCATTGGTTCGTAACAAATATTAAACCATTGtgattgtctttaaaatgaaaattctgttcaAAACATTCCAAAAATAAGCCATTTAAATAGGATTCAACATCTTGAGGGAGTTTTGGAGAAAGATAGATTTTCTTGTGATGGTGCAGTCACAAtagttttctgttaaacaaatgTAGAAAACCAAAAACTTGTTGTTTGacgttttgttttttgaaaaaaaataaaaaaaataaaaaaaaataaaaaaaataaaaaaataaaatatatatatatatatatatatatatatatatatatatatatacaacttttCTGCCAGTTATATTGACTTTATTATTTTGCAGTCAAACCTATTTGACTCATTCCCTT

Function

symbol description
tnfsf18 Predicted to enable tumor necrosis factor receptor binding activity. Acts upstream of or within epiboly involved in gastrulation with mouth forming second and positive regulation of tyrosine phosphorylation of STAT protein. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; gut; immune system; ovary; and paraxial mesoderm. Orthologous to human TNFSF18 (TNF superfamily member 18).

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0002309 T cell proliferation involved in immune response biological_process
GO:0033209 tumor necrosis factor-mediated signaling pathway biological_process
GO:0042531 positive regulation of tyrosine phosphorylation of STAT protein biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005164 tumor necrosis factor receptor binding molecular_function
GO:0032813 tumor necrosis factor receptor superfamily binding molecular_function

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04052 Cytokines and growth factors

ZFIN:

id description
ZDB-GENE-101109-1 Predicted to enable tumor necrosis factor receptor binding activity. Acts upstream of or within epiboly involved in gastrulation with mouth forming second and positive regulation of tyrosine phosphorylation of STAT protein. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; gut; immune system; ovary; and paraxial mesoderm. Orthologous to human TNFSF18 (TNF superfamily member 18).

Ensembl:

ensembl_id ENSDARG00000111698

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052057 True 3475 mRNA 0.32 3 47281236 47294365

Neighbor

gene id symbol gene type direction distance location
XLOC_026733 tmed1a coding downstream 45239 47222096 ~ 47235997 (-)
XLOC_026732 NA coding downstream 84276 47194738 ~ 47196960 (-)
XLOC_026731 NA coding downstream 150125 47130032 ~ 47131111 (-)
XLOC_026730 qtrt1 coding downstream 153140 47114328 ~ 47128096 (-)
XLOC_026729 CR392045.1 coding downstream 175969 46919522 ~ 47105267 (-)
XLOC_026735 adgrl1a coding upstream 204068 47498433 ~ 47876427 (-)
XLOC_026736 NA coding upstream 532837 47827202 ~ 47833114 (-)
XLOC_026737 znf750 coding upstream 958837 48253202 ~ 48259289 (-)
XLOC_026738 NA coding upstream 1029175 48323540 ~ 48328133 (-)
XLOC_026739 NA coding upstream 1167132 48461497 ~ 48473754 (-)
XLOC_026727 CR385086.1 non-coding downstream 518530 46757611 ~ 46762706 (-)
XLOC_026726 NA non-coding downstream 817980 46462585 ~ 46463256 (-)
XLOC_026723 CR450782.1 non-coding downstream 1054226 46224589 ~ 46227010 (-)
XLOC_026745 NA non-coding upstream 1705538 48999903 ~ 49001293 (-)
XLOC_026747 NA non-coding upstream 1729535 49023900 ~ 49036782 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000033_00509701_00513969 NA coding CI01000033 null 509393 ~ 514281 (-)