twist3 (LOC106572367)


Basic Information

Item Value
gene id twist3
gene name LOC106572367
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 54926728 ~ 54934570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988340.1
GGCTAAGTCCTCGTTTGAGCGTGCAGTTCAAACAGGAGAAGGCAGAGATTTCTTACCTTTTCCAGACGTCGGCTATCTCCAGGGGGCTTTCCATACAACACAGGGTATTGTCCACATTTCTTCAGAGAATAACCCACACCACATACTAAATGCACTCAAGTGATTCCACATATAAACATTGTACCCTAGTGCAACACAACCCAACGTCCCTGATGCATTCAGTGCACTTTTACATTGGAGGGCATTCATGGAACTGTTTTGGACTGAGGCATATTCAAATCGAATCTCAAAAGTCAAGCAATAGATTTTGTTCTTGTGTTGTGGATGTCTGCAATGTTTGAGAACCGAGTGATGGTGGTGGAACTGAAGGGTATGTTCATGTTCTGGCACAGAGGATGAAACAAAGGTTTCCAGAGGCACCCCTTAGATTCAGAACctctcattctttcctttacTTGAGCTAATTTTGCTATTAGACTTCACTGCTACTCTGGTATGCCAGTTTCCCCTTTAGCCTGCCGCTCAGAAGACTGTGCCAGGTCTCCAGTAAAACAAAGTGAATCTGAACACACTGTCTCTGAGGCTTTTTCTGACTTACAAAACAATGGAACTGTGAAATTGAATGCAATGAAACTGTACAGACGATTCAGTTCGATGAAAGGTTAAGATAATGACAGCCTAGTTCTATAGTATCTATCTCTCTAGAACTACTAAAGAGTGTTTTTTCTCTTCCTCATGCAAAGCCTCTAATTATTCTAAGAAACCTGGGCACACTAACAAGGTCTGTCCTGAGGAGTTATAGTACATCATGTGAGGAGAATATTGTCTAGTTCCTACTTTCAAAATCCAAAGGAattgatgatggtgttgagttGTGGAGACTTTAAGAAGGGAAAAGGAGGTATGGGGGAGGGGAGCTACTTGTTTTGGAAGAAATCTGGAACCTATAAACTTGGACAACTTATACGAAAAAGAACGGCAGAATATCCTCATCTGATTGGTCAACCCACGTGCCTTTGTCTCCGCCTCATCCCTTTACCCTTACCAATCACAAAACGCATTCTCTTCCTGTTATGCTTGGCCTGGCTGTGCCTTAGAACCCATCTGGACCAATCTGTGGAACAGATGGGTGGGAACTTACAAGTTCCATCCTCTTTCTTCTTTAAAAAGCCAGATGCAGGTTGGCTGCTGTCTTACATTGAGCTAGGATACTGGACGCAACTGCCGTTCTGAATGTAGCGAGCAGATTGTATTGTTAAATTGTTGTCATGTCTAGATGTAGGCAACATATGGATTTCCAATACTGAGAATTGattatttttccatttgcttTCTATTGCTAGCAGACCTGGCAGATCACTTCTGGTATTTCTATATACAGGCTTGCCATAGAACAGAGAAACTAAAGGAGGCATAGCCCATTAGAGGCCCTGAATGAGAGAACAGAGGAGTGGGATAGAAACAGTGTAGGTGTAGAAACAGGGTTAGGTAGATAGACTGCCATGAGAGAGGATCCGTCAAGCTGTGGTGAATACCCTGAGGGAGGGGTGGTGTCCAGCGAGGAGGAGCCAGACTGTGCTCCAAACAAATGCCCTGTGGTGGTGGCAACACCAGGGGCTGGCGGGCGCAAAAGGGTCACCAGGAAAGACAACATTTCATCGCCAACAGAGGACAACAAGTCAACAACAGGAGGGCCGCCCAGTCTGATCCCATCAGGACCCAAGAGGCCTAAGAAGAGTCCCCagccctccctgtctcctctccccatcccaggCCAGCCCCTGGAGGACCCTCAGCACCAGCGGGTGGTCGCCAATGTACGGGAGCGCCAACGGACGCAGTCCCTGAATGATGCCTTTGCCTCGCTTCGTAAGATCATCCCCACGCTGCCGTCAGACAAGCTGAGCAAGATTCAGATCCTGAAGCTGGCCTCACGCTACATTGACTTCCTCTACCAAGTCCTGCAGAGTGATGAGATGGACGCCAAGCTGGCCAGCTGTAACTACCTAGCCCACGAGAGACTCAGCTATGCATTCTCAgtgtggaggatggagggggccTGGTCCATGTCCGCTACCCACTAGCCCTCCCACTTACCTCTCTAACACCCTCTCGCCCTCCCCTCCTGCCCCCTCGCCCTCCCACAGCTGCGCCCTCCGGACCAAATCTcccatgacctctgacccctgctcTCTGACCCTCATCCTCACACCATCTAACTCCTCCACCACTCTACACCAGCATAGGACCAAGGCGATTGAGAAGCCTTCACGTTGGTCTGCAATCCCTTTGATTACTGGTTTGTACTTACACCTCTGGACCAACTAAATCACAGATCTCAGCCTTGCCCTCACTCTGGAGAGGTACTGTAGAGACTCGGCTTCCTCGAGCGCACACCGAATCGTCAGGGCAACAATTTTGAGCTACTAGCAGGCCTGGAAGACAGACAACTATAACATTTTATGACCTGGAAATTGCAACTTTGACTTAGAAACAGTTTTGTACACAAATGTAAGTCATGTGAATGTTTCTTTTCTAGTGTAAATGCATGTAGTCACAAACAATAGAACATTCTTGATTAAAAGGGAATCAGTTGCTGTAAAGAATGTATTTGTATTACAATTGTAGATATGTGGATAAAACATGCCTTGTGATTTTCTTGTCCATATAATAAAAATGTGTGTCTCATCTTATAACCGGTCTCACCTTTAACCCTGTACTGCGACGACACCAGCATGGTCCACCATCAGCCTTCAATATTTGGAGATGGACGATGACACAATGGCATTTCTAAACACCAAATACATATGAAATACTTGGGACTATTATCCtcctttgtgtttgtgtgtgaaataACCTGGGGTCTATCTACGAGTTACCATGTCAGCCTTAATTAGTGCTCTAGAACATACGCCTCGTTAAGAAGTCTGCTCTGGCAGACTAAGGTATAATTGCACATAAAGCTGTTGTTCTTTTGGGGGAAAATAAGGCCTCTAAAATATTTATTGGTTGGAAAGAAATCTTGTGATATACCCAACCACAGAAGCACATGTGGATACATGCATTAATGGACCATGAGAGTGTACACTGTATATCAAACATGTCACACctacacatgtgcacacacaacaTTTTCAATTTTAATTAAGAGAAAATCAGTACAAAATAGACATTCTTTCTATACACACATAGGAAATATGGAGGAAACAAACAAGGTAAAATAAAAGTATGAAAGTATGAAAAAAGATTCAATGTCATTTTTTGTTATTCTAAACTTGTTAGTGAAGGCTACCAATACATGATTCAAGGCACATGTGTGATGCATTTTGGTCTTGAGTATCTATTTACAGTGACTTTAGCAAGTAGATCATAAAAAGGACCAGAAGTCGATCATAAAAAGAAATGGTGAGGAGTGGCCCACTGGCAACTAAGACAAAATGAGTGTGGCCCATAGACCCCTGGAAAACTTTACAGGAGAGCTAATGTACAGTATTCAACACACTTTAACTCTAACAGAGTTAAACCCTTCATAGACAACAGATACCCACTGGTGCACAACGAGACAGTCACAACAGTCACTGTCAGTTCTACGAGACAGTCACAACACAGTCACTGTCCGTTCTATGAGACAGACAACACAGTCACTGTCAGTTCcacgagacagaca

Function

NR:

description
twist-related protein 2-like

GO: NA

KEGG:

id description
K09069 TWIST; twist

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988340.1 True 3667 mRNA 0.45 3 54926728 54934570

Neighbor

gene id symbol gene type direction distance location
LOC110532395 LOC106571990 coding upstream 620555 54295022 ~ 54306173 (+)
LOC110532396 LOC106571991 coding upstream 678813 54245323 ~ 54249584 (+)
LOC110532392 dffb coding upstream 687222 54234796 ~ 54239506 (+)
LOC118966073 NA coding upstream 693281 54231749 ~ 54233447 (+)
LOC110532391 LOC106571996 coding upstream 1253230 53596083 ~ 53676213 (+)
LOC110532404 LOC106572363 coding downstream 257783 55192353 ~ 55207365 (+)
LOC110532406 LOC106572360 coding downstream 283036 55217606 ~ 55224372 (+)
LOC110532408 ctbl1 coding downstream 393542 55328112 ~ 55372587 (+)
LOC110532409 LOC106572359 coding downstream 440605 55375175 ~ 55410299 (+)
LOC110532410 LOC106572358 coding downstream 484753 55419323 ~ 55425566 (+)
G819970 NA non-coding upstream 86381 54839934 ~ 54840347 (+)
G819930 NA non-coding upstream 91264 54835219 ~ 54835464 (+)
G819929 NA non-coding upstream 92018 54783137 ~ 54834710 (+)
G819915 LOC106572368 non-coding upstream 165222 54760641 ~ 54761506 (+)
G819914 NA non-coding upstream 166884 54759619 ~ 54759844 (+)
G820042 NA non-coding downstream 14495 54949065 ~ 54949742 (+)
G820110 NA non-coding downstream 116883 55051453 ~ 55051664 (+)
G820114 NA non-coding downstream 119663 55054233 ~ 55054479 (+)
G820121 NA non-coding downstream 126153 55060723 ~ 55060941 (+)
G820129 NA non-coding downstream 136296 55070866 ~ 55071083 (+)
G819897 NA other upstream 199352 54726871 ~ 54727376 (+)
LOC110532368 LOC106572016 other upstream 2199208 52692676 ~ 52734929 (+)
LOC110532349 LOC106591969 other upstream 2601088 52323001 ~ 52325924 (+)
G815767 casz1 other upstream 3580234 51345372 ~ 51346494 (+)
G815610 NA other upstream 3847786 51078447 ~ 51078942 (+)
G820665 NA other downstream 298688 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 596467 55531033 ~ 55647541 (+)
G820944 NA other downstream 763070 55697640 ~ 55697978 (+)
G821363 uhrf1bp1 other downstream 1039472 55974042 ~ 55975316 (+)
G821409 pacsin1 other downstream 1127136 56061706 ~ 56063655 (+)

Expression


Co-expression Network