LOC110532404 (LOC106572363)


Basic Information

Item Value
gene id LOC110532404
gene name LOC106572363
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 55192353 ~ 55207365 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616281.2
GTATGCGTGCGCACCACCTTGTTTCGGTCACGTGAGACGATTACGAATATGGTGGAAGTGTATTTCTTGAAGTGAAGCCGCAAAAGAACCAAAACAGACCGGGATATTAAGGAAAGTTGCCTGTCACGTCTTGAACTTCTTCTGCCCTTGGATTCGGGTATGTCATGGCCTCCAGCATTGCTAAACCAGGCCCTGGGAATGGCTACCCCATGAAGGCACAACTGCAAATTATGGTGCTATCAGCAAAACTGAAAGAGAACAAGAAGAACTGGTTTGGCCCCAGTCCATATGTTGAAGTTGCAGTTGACGGCCAGTCCAAAAAGACCGAAAAATGCAACAACACCCACAGTCCCAAATGGAAGCAGCTGCTCACTGTAATTGTCACTCCTTTCAGCAAGCTCATCTTCCGGGTATGGAGTCACCAGACCTTGAAGTCGGACGTATTGTTAGGCATGGCAACTCTGGAGGTCAGCGACACACTCAAATCCAACGACATGAATATCTCTGAGGTGGTGCAGACCCTGCAGCTGAGTACAGACAAAGACCAGACCGATGTGGTGggggacctgtctgtctgtctggacggcATGCAGGTCGACCCAGAGATGTTTGCCTCTGCTGTCGAGGCCAACAGCCGAAGTATGTCAAATGGGGAATCGCAACACAACGGGGATCATGATGTGAGGAGGAGTAGAGATGGCTCTCCTTCTGTGGATGGTTTGGAGCACAGAGCTTCCCCAACTGGGCGTGTGGTCGCAGTGAACGGCACAGGGTCTCCCGCTCTGTCAGCAGGTGGCTCCAAGGGGAATCCTCTACGGCCCCCCAGGCCCTCCCGACCCCCACCACCCACCCCACGCAGACCAACCTCCTCTCCAGCATCCTCTAATAGTTCCATACCAACTGAAGGAAGCGATGGCCCCAGCTCAGAAACCCCAGTCCGTATGCCTGCACCTGCAGTACCAGCCGCAGACCCCAATGCCCCACCCCCTACACACGACCAGAGCCAAGCAATAGCAGCCAGACAAGCAGCCAGTGTTGCTCCAGGCCCCCCCAGAGTCCCCACTGTCGCTGCAGGCCCACTGCTTCCTGGATGGGAGCAGAGGGTGGATCAGAACGGAAGGCTGTATTTTGTAGATCATGTGGAAAAGAGAACGACGTGGGAGCGGCCTGAGCCTCTACCTTCTGGGTGGGAGCGGCGAGTGGACCCCATGGGCAGGGTCTACTTTGTAGACCACATCACCAGAACTACCACCTGGCAACGGCCCACCATGGAGACGGTACGGAACTATGAACAGTGGCAGCACCAACGCAACCAGCTACAGGGTGCCATGCAGCAGTTCAACCAGCGCTTCATATTTGGGGTGAATGGGCTCCAGGACCAGGTTCCAGCCACTGAGAATAAGCAGTTTGATCCCCTGGGCCCGCTGCCACATGGATGGGAGAAAAGAACTGACAGCAACGAGAGAGTGTACTTTGTCCAACACACCACACGGACTACACAGTGGGAGGACCCTCGCACTCAGGGgCTGCTGAATGAAAAGCCTCTTCCAGAGGGCTGGGAGATGAGGTTCACTGTCGACGGCATCCCGTACTTTGTGGACCACAACAGGAGAGCCACTACATACATCGACCCTCGCACTGGAACATCCTCACTTGAAAATGGGCCCCAGATTACTTACGTTCGAGACTTTAAAGCCAAAGTCCAGTACTTCAGATTCTGGTGCCAGCAATTGTCAATGCCTCAGCACATCAAGATCACTGTCACCCGCAAAACCCTGTTTGAGGACTCGTTCCAACAAATAATGAGCTTCAATGCACAGGACCTCCGCAGGAGACTATGGATCATATTCCCTGGGGAAGAAGGCCTCGACTATGGTGGGGTGGCAAGGGAGTGGTTTTTCCTGCTGTCTCACGAGGTGCTGAACCCCATGTACTGCCTATTTGAATATGCTGGGAAGGACAACTACTGCCTGCAGATCAACCCTGCCTCATACATCAACCCTGACCACCTTAAATACTTTAAATTCATTGGACGCTTCATCGCTATGGCTCTTTTCCATGGGAAGTTCATTGACACAGGCTTCTCGCTGCCGTTCTACAAGCGCATGCTGAACAAGCCATGGGCACTGAAAGATCTTGAGTCCATTGACACAGAATTCTACAATTCTCTTATCTGGATTAAGGAGAATGACATTGAGGAGTGTGGCCTGGAGATGTACTTCTCTGTGGACAAAGAGATTCTGGGTGAAATCACCACTCATGAGCTCAAGCCGGACGGTGGCGAGGTCCTGGTCACTGAGGAGAACAAGGGGGAGTATATTAGGCTTGTAGCAGAGTGGAGGTTGTCCAGAGGTGTGGAGGAGCAGACCCAGGCCTTCTTTGAGGGTTTCAACGAGGTCCTCCCACAGCAGTACCTGCAGTACTTTGACGCCAAAGAACTGGAGGTGATGCTGTGTGGGATGCAGGAGATTGACCTGACAGACTGGCAGAGGAACACCATCTACAGACACTACGCACGCAGCAGCAAGCAGGTCCTCTGGTTCTGGCAGCTCATCAAAGAGATGGACAACGAGAAGCGGATGAGACTCCTCCAGTTCGTCACAGGCACCTGTCGCCTTCCCGTTGGAGGCTTTTCTGACCTATTGGGGAGCAATGGCCCGCAGAAGTTCTGCATTGAGAAGGTGGGAAAGGAGAACTGGCTGCCCAGAAGTCACACCTGCTTCAATCGATTGGATCTGCCTCCTTACAAAAGCTATGAGCAGCTGAAGGAGAAATTGATGTTTGCGATTGAAGAGACTGAGGGCTTTGGGCAGGAGTGATCTAGCAACTGATCGATAGACACAGGAGTGTGGTCTTCGTTTGTCAGTGTTTAAGCCAGGGAGCATCTCGAAGACTGGCATCTGTGTAagcgtgtttgtgcgtgcgtgctgTTGAAGGGAGAGACCTTGCTCTAAAATATTGGAAGCATATTAGAGGTGGTTATTGATCCACAAGAGTAAACTGCTCCTGTCTCATAGAATGTGTGCCCCTCCCCCCATCATGTATTAACGCTGGAAACTCACCCTCAATAACATCATATCATATATGGGACAGGGTTATCAGCAGCATCGGTCCCAACACTATTTCTGACTATCCCAACACTGACTTTAAGGAAAATTGTTACGTCTGATAAGACAATGGCCAGATCAAGAAGGTTCACTGCACATGCTTTAAAATAGAACAGTTCTTCTGTTCAAGGTTCCTTAGCATTTATCTGTGAATCAATAAAATATTGCACGGGACAATATTGGCCCCTATATTTATAAAGGTACATGGATGTGGCTCTACTATGACCCTAGTTTTATAGGGCATTGTGACATGATAAAATGTAATCTCTTTAAGTATTCTGGGGAATAGGAAGTGTGAAATGTTTGTGTCCAGAATATTGCcttgatgtcttggctgatttgcgATTTAACCAAGTTGTGTGCTGAGGTTGTGCCTGTGAAGACTAAACAGGTAGCTTTTAAAAGAGATTTTTAACAAACTGATTTATCCATTTTATATTAATGGGAGATGTTTTTCTAGCCGTGGCAAAGGCATGGGAACGTCGGTGAGAATACATTTAGTTTGTTTTTCTGGgttgattttgaatggaaatcctAGGGTAGTTAATGTGTAAATAATGATTTATGGTGCATTGAAAATAAAAAGTTGGCTCCTATTTTTGTCTCCAGATGTATCCTTAATGCAACTTAAACTGCTCTCCCTGTATATGAAACCATGTTGTAAATTGTGTTAATAACAAATTAATTTCATTTTGTAAAATAAAGTGTTTAGTAATAAGGGGTGTGTTGTGAAACGCCATTTGAAAGATTTTTCCCCTGTTTTGATTTATGTACATTATgaatttgtgtaaaaaaaaaa
>XM_036988349.1
cagctggcgTGTGGcaggtctcagacgatcccgcaagtGAAGAAGCCATATCGGTATGTCATGGCCTCCAGCATTGCTAAACCAGGCCCTGGGAATGGCTACCCCATGAAGGCACAACTGCAAATTATGGTGCTATCAGCAAAACTGAAAGAGAACAAGAAGAACTGGTTTGGCCCCAGTCCATATGTTGAAGTTGCAGTTGACGGCCAGTCCAAAAAGACCGAAAAATGCAACAACACCCACAGTCCCAAATGGAAGCAGCTGCTCACTGTAATTGTCACTCCTTTCAGCAAGCTCATCTTCCGGGTATGGAGTCACCAGACCTTGAAGTCGGACGTATTGTTAGGCATGGCAACTCTGGAGGTCAGCGACACACTCAAATCCAACGACATGAATATCTCTGAGGTGGTGCAGACCCTGCAGCTGAGTACAGACAAAGACCAGACCGATGTGGTGggggacctgtctgtctgtctggacggcATGCAGGTCGACCCAGAGATGTTTGCCTCTGCTGTCGAGGCCAACAGCCGAAGTATGTCAAATGGGGAATCGCAACACAACGGGGATCATGATGTGAGGAGGAGTAGAGATGGCTCTCCTTCTGTGGATGGTTTGGAGCACAGAGCTTCCCCAACTGGGCGTGTGGTCGCAGTGAACGGCACAGGGTCTCCCGCTCTGTCAGCAGGTGGCTCCAAGGGGAATCCTCTACGGCCCCCCAGGCCCTCCCGACCCCCACCACCCACCCCACGCAGACCAACCTCCTCTCCAGCATCCTCTAATAGTTCCATACCAACTGAAGGAAGCGATGGCCCCAGCTCAGAAACCCCAGTCCGTATGCCTGCACCTGCAGTACCAGCCGCAGACCCCAATGCCCCACCCCCTACACACGACCAGAGCCAAGCAATAGCAGCCAGACAAGCAGCCAGTGTTGCTCCAGGCCCCCCCAGAGTCCCCACTGTCGCTGCAGGCCCACTGCTTCCTGGATGGGAGCAGAGGGTGGATCAGAACGGAAGGCTGTATTTTGTAGATCATGTGGAAAAGAGAACGACGTGGGAGCGGCCTGAGCCTCTACCTTCTGGGTGGGAGCGGCGAGTGGACCCCATGGGCAGGGTCTACTTTGTAGACCACATCACCAGAACTACCACCTGGCAACGGCCCACCATGGAGACGGTACGGAACTATGAACAGTGGCAGCACCAACGCAACCAGCTACAGGGTGCCATGCAGCAGTTCAACCAGCGCTTCATATTTGGGGTGAATGGGCTCCAGGACCAGGTTCCAGCCACTGAGAATAAGCAGTTTGATCCCCTGGGCCCGCTGCCACATGGATGGGAGAAAAGAACTGACAGCAACGAGAGAGTGTACTTTGTCCAACACACCACACGGACTACACAGTGGGAGGACCCTCGCACTCAGGGgCTGCTGAATGAAAAGCCTCTTCCAGAGGGCTGGGAGATGAGGTTCACTGTCGACGGCATCCCGTACTTTGTGGACCACAACAGGAGAGCCACTACATACATCGACCCTCGCACTGGAACATCCTCACTTGAAAATGGGCCCCAGATTACTTACGTTCGAGACTTTAAAGCCAAAGTCCAGTACTTCAGATTCTGGTGCCAGCAATTGTCAATGCCTCAGCACATCAAGATCACTGTCACCCGCAAAACCCTGTTTGAGGACTCGTTCCAACAAATAATGAGCTTCAATGCACAGGACCTCCGCAGGAGACTATGGATCATATTCCCTGGGGAAGAAGGCCTCGACTATGGTGGGGTGGCAAGGGAGTGGTTTTTCCTGCTGTCTCACGAGGTGCTGAACCCCATGTACTGCCTATTTGAATATGCTGGGAAGGACAACTACTGCCTGCAGATCAACCCTGCCTCATACATCAACCCTGACCACCTTAAATACTTTAAATTCATTGGACGCTTCATCGCTATGGCTCTTTTCCATGGGAAGTTCATTGACACAGGCTTCTCGCTGCCGTTCTACAAGCGCATGCTGAACAAGCCATGGGCACTGAAAGATCTTGAGTCCATTGACACAGAATTCTACAATTCTCTTATCTGGATTAAGGAGAATGACATTGAGGAGTGTGGCCTGGAGATGTACTTCTCTGTGGACAAAGAGATTCTGGGTGAAATCACCACTCATGAGCTCAAGCCGGACGGTGGCGAGGTCCTGGTCACTGAGGAGAACAAGGGGGAGTATATTAGGCTTGTAGCAGAGTGGAGGTTGTCCAGAGGTGTGGAGGAGCAGACCCAGGCCTTCTTTGAGGGTTTCAACGAGGTCCTCCCACAGCAGTACCTGCAGTACTTTGACGCCAAAGAACTGGAGGTGATGCTGTGTGGGATGCAGGAGATTGACCTGACAGACTGGCAGAGGAACACCATCTACAGACACTACGCACGCAGCAGCAAGCAGGTCCTCTGGTTCTGGCAGCTCATCAAAGAGATGGACAACGAGAAGCGGATGAGACTCCTCCAGTTCGTCACAGGCACCTGTCGCCTTCCCGTTGGAGGCTTTTCTGACCTATTGGGGAGCAATGGCCCGCAGAAGTTCTGCATTGAGAAGGTGGGAAAGGAGAACTGGCTGCCCAGAAGTCACACCTGCTTCAATCGATTGGATCTGCCTCCTTACAAAAGCTATGAGCAGCTGAAGGAGAAATTGATGTTTGCGATTGAAGAGACTGAGGGCTTTGGGCAGGAGTGATCTAGCAACTGATCGATAGACACAGGAGTGTGGTCTTCGTTTGTCAGTGTTTAAGCCAGGGAGCATCTCGAAGACTGGCATCTGTGTAagcgtgtttgtgcgtgcgtgctgTTGAAGGGAGAGACCTTGCTCTAAAATATTGGAAGCATATTAGAGGTGGTTATTGATCCACAAGAGTAAACTGCTCCTGTCTCATAGAATGTGTGCCCCTCCCCCCATCATGTATTAACGCTGGAAACTCACCCTCAATAACATCATATCATATATGGGACAGGGTTATCAGCAGCATCGGTCCCAACACTATTTCTGACTATCCCAACACTGACTTTAAGGAAAATTGTTACGTCTGATAAGACAATGGCCAGATCAAGAAGGTTCACTGCACATGCTTTAAAATAGAACAGTTCTTCTGTTCAAGGTTCCTTAGCATTTATCTGTGAATCAATAAAATATTGCACGGGACAATATTGGCCCCTATATTTATAAAGGTACATGGATGTGGCTCTACTATGACCCTAGTTTTATAGGGCATTGTGACATGATAAAATGTAATCTCTTTAAGTATTCTGGGGAATAGGAAGTGTGAAATGTTTGTGTCCAGAATATTGCcttgatgtcttggctgatttgcgATTTAACCAAGTTGTGTGCTGAGGTTGTGCCTGTGAAGACTAAACAGGTAGCTTTTAAAAGAGATTTTTAACAAACTGATTTATCCATTTTATATTAATGGGAGATGTTTTTCTAGCCGTGGCAAAGGCATGGGAACGTCGGTGAGAATACATTTAGTTTGTTTTTCTGGgttgattttgaatggaaatcctAGGGTAGTTAATGTGTAAATAATGATTTATGGTGCATTGAAAATAAAAAGTTGGCTCCTATTTTTGTCTCCAGATGTATCCTTAATGCAACTTAAACTGCTCTCCCTGTATATGAAACCATGTTGTAAATTGTGTTAATAACAAATTAATTTCATTTTGTAAAATAAAGTGTTTAGTAATAAGGGGTGTGTTGTGAAACGCCATTTGAAAGATTTTTCCCCTGTTTTGATTTATGTACATTATgaatttgtgtaaaaaaaaaa

Function

NR:

description
E3 ubiquitin-protein ligase Itchy-like

GO: NA

KEGG:

id description
K05633 WWP1, AIP5; NEDD4-like E3 ubiquitin-protein ligase WWP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616281.2 False 3906 mRNA 0.49 24 55192353 55207365
XM_036988349.1 True 3802 mRNA 0.49 24 55193554 55207365

Neighbor

gene id symbol gene type direction distance location
twist3 LOC106572367 coding upstream 257783 54926728 ~ 54934570 (+)
LOC110532395 LOC106571990 coding upstream 886180 54295022 ~ 54306173 (+)
LOC110532396 LOC106571991 coding upstream 944438 54245323 ~ 54249584 (+)
LOC110532392 dffb coding upstream 952847 54234796 ~ 54239506 (+)
LOC118966073 NA coding upstream 958906 54231749 ~ 54233447 (+)
LOC110532406 LOC106572360 coding downstream 10241 55217606 ~ 55224372 (+)
LOC110532408 ctbl1 coding downstream 120747 55328112 ~ 55372587 (+)
LOC110532409 LOC106572359 coding downstream 167810 55375175 ~ 55410299 (+)
LOC110532410 LOC106572358 coding downstream 211958 55419323 ~ 55425566 (+)
LOC110533022 LOC106611372 coding downstream 265375 55472740 ~ 55482782 (+)
G820211 NA non-coding upstream 7529 55184604 ~ 55184824 (+)
G820175 LOC106572364 non-coding upstream 34085 55157091 ~ 55158268 (+)
G820174 LOC106572364 non-coding upstream 35626 55155407 ~ 55156727 (+)
G820176 NA non-coding upstream 43073 55127150 ~ 55149280 (+)
G820163 NA non-coding upstream 82154 55108836 ~ 55110199 (+)
G820655 NA non-coding downstream 14214 55221579 ~ 55221882 (+)
G820673 NA non-coding downstream 52996 55260361 ~ 55260802 (+)
G820717 NA non-coding downstream 91411 55298776 ~ 55299160 (+)
G820734 NA non-coding downstream 100349 55307714 ~ 55307954 (+)
G819897 NA other upstream 464977 54726871 ~ 54727376 (+)
LOC110532368 LOC106572016 other upstream 2464833 52692676 ~ 52734929 (+)
LOC110532349 LOC106591969 other upstream 2866713 52323001 ~ 52325924 (+)
G815767 casz1 other upstream 3845859 51345372 ~ 51346494 (+)
G815610 NA other upstream 4113411 51078447 ~ 51078942 (+)
G820665 NA other downstream 25893 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 323672 55531033 ~ 55647541 (+)
G820944 NA other downstream 490275 55697640 ~ 55697978 (+)
G821363 uhrf1bp1 other downstream 766677 55974042 ~ 55975316 (+)
G821409 pacsin1 other downstream 854341 56061706 ~ 56063655 (+)

Expression


Co-expression Network