LOC110532408 (ctbl1)


Basic Information

Item Value
gene id LOC110532408
gene name ctbl1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 55328112 ~ 55372587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616290.2
CATGTTTGCAGTTTTCCATGACACCTCAGAATATCACGACAACGAAGTTCTTTACGACAGATTTTTCTGTTTTGAGTTGATAGCGGAAAATTGCAAGACTAGCAAGTTAGCCTGTATTCATTGTGGATAGCTGGAGCTTGCTAACTGTTGCCGATAACTTAACATTTAATGGTTTATTTTTCCACGTTTTGGATAACCTTTTATCATGGATGTAGGCGAGCTACTGAATTATCAGCCTGACAGGGGGGCAAAACGTCTACGggctggtgatgatgatgatgatgaccccAGAAACAAAAAGGCCGGCAGAGAACTGGCCAGAAACCTGGAGGGAGATGACAGTGAAGACCCGAGTGGGGATAGGAAGAGAATACTGGAGAAACTCATGGATGATGATGAGGACGCAGATGACCAAGAGGGTGAACCAGTGGATGAAAGTTCAGTGAAGAAAATGATCTTGACCTTTGAAAAAAGGTCCTACAAGAACCAAGAGCTGAGGATAAAGTTCCCAGACACCCCAGGAAGGTTCATGGAAACAGAGCTGGATTTGAATGACATCATCCAGGAGATGCATGTCATAGCCACCATGCCTGATCTCTACCACCTGTTGGTGGAGCTCAATGCTGTCCATTCCCTGCTGGGTTTACTCAGCCATGAGAACACAGATATAGCCATTGCAGTGGTTGATTTGTTACAAGAGCTGACAGACATCGACACACTTCATGAAAGTGAGGAGGGGGCTGAAGTACTCATAGACTCTTTGCTGGAGGGACAGGTTGTGGCCCTTCTGGTGCAGAACATGGAGAGGCTGGATGAGCTGGTGAAGGAGGAAGCTGATGGAGTCTACAACACGTTAGcCATCATTGAGAACATGGCAGAGTTCAGGCCTGGCCTGTGCACAGAAGCAGCTCAGCAAGGACTCATGCAGTGGTTGCTAAAAAGAATCAAGgcAAAGATTCCTTTCGATGCAAACAAGCTGTACTGCAGTGAAGTCTTGGCTATCTTGCTTCAAAACAATGACAGCACCAGGGAGCTCTTGGGGGAGCTGGATGGAATTGACGTGTTACTGCAGCAGCTCTCTGTGTTCAAACGCCACAACCCAGCCACAGCGGAGGAGCAGGAGATGATGGAGAACCTGTTTGATGCCATGTGCTCCTGTCTGATGCTGGCTTCCAACCGGGATCGCTTCCTCAGGGGAGAGGGTCTGCAGCTCATGAACCTCATGCTTAGGGAAAAGAAAATGTCTCGGACCAGCGCTCTGAGGGTCTTAGACCATGGCATGATTGGCCCAGAGGGTTCTGATAACTGCCACAAGTTTGTGGACATCCTGGGCTTGAGGACCATTTTCCCCCTGTTCATGAAGACCCCCAAGAAGATGAGGAAAGCTGGGGCCGCAGACAAAGAACATGAAGAACACGTGTGTTCCATCATATCTTCCTGCCTGCGGAACCTGAAAGCCCAGCAGAGGACGAGGCTCCTTAGCAAGTTCACTGAGAACGACTGTGAGAAGGTTGATAGACTGATGGAGCTGCATTTTAAGTACCTGGAAGCTGTTCAGTTGGCTGACaagaggatagaaggagagaaaCACgacaTGGTTAAACGTGGTGAGATTCTGGATGATGTGATGGAGGATGAGTTCTACCTACGGAGGCTGGATGCTGGACTGTTTGTCCTCCAGCTCCTCTGTTATATCATGGTGGAGATCAGCAACTCTGGGATATCCCAGCTGCAGCAGAGGGTGCATCAGATCCTCAACCTGAGGGGAGGCTCTGTCAAAGTGGTGCGGCACATCATGAGAGAGTATGCTGAAAACATTGGTGATGGGAAGAGTGAGGAGTTCAAAGAGAGCGAGCAGAAGAGGATCATGGACCTGCTGGAGAacttctaaccctaaccaaccACTGGGGGGAGTGACCTGACCAGCGGTCAGCTTCGACATGGACGGGGGGTCTCCACACACTCAGACAGAAGATACCAGGGTCCAGCAAGTGCAGAGAAGGTGTATTGATTGCTCTCTCTGGGCTGGAACATGTGATGGACCATAGTGACTCAAAATATATTAACAAAGATACGCAGTCTTAAGCTTTGTGGTGTTTTGAgttgtgtgttttataataaacATTTGGTAATAAAATCCTA

Function

NR:

description
beta-catenin-like protein 1

GO: NA

KEGG:

id description
K12864 CTNNBL1; beta-catenin-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616290.2 True 2142 mRNA 0.48 16 55328112 55372587

Neighbor

gene id symbol gene type direction distance location
LOC110532406 LOC106572360 coding upstream 103740 55217606 ~ 55224372 (+)
LOC110532404 LOC106572363 coding upstream 120747 55192353 ~ 55207365 (+)
twist3 LOC106572367 coding upstream 393542 54926728 ~ 54934570 (+)
LOC110532395 LOC106571990 coding upstream 1021939 54295022 ~ 54306173 (+)
LOC110532396 LOC106571991 coding upstream 1080197 54245323 ~ 54249584 (+)
LOC110532409 LOC106572359 coding downstream 2588 55375175 ~ 55410299 (+)
LOC110532410 LOC106572358 coding downstream 46736 55419323 ~ 55425566 (+)
LOC110533022 LOC106611372 coding downstream 100153 55472740 ~ 55482782 (+)
dlgap4a dlgap4 coding downstream 158446 55531033 ~ 55647541 (+)
LOC110532413 LOC106572354 coding downstream 276182 55648769 ~ 55683707 (+)
G820771 NA non-coding upstream 1686 55326214 ~ 55326426 (+)
G820769 NA non-coding upstream 3060 55324832 ~ 55325052 (+)
G820760 NA non-coding upstream 6636 55320448 ~ 55321476 (+)
G820742 NA non-coding upstream 14694 55313040 ~ 55313418 (+)
G820734 NA non-coding upstream 20158 55307714 ~ 55307954 (+)
G820831 NA non-coding downstream 83992 55456579 ~ 55456870 (+)
G820837 NA non-coding downstream 93376 55465963 ~ 55466765 (+)
G820838 NA non-coding downstream 95112 55467699 ~ 55467901 (+)
G820665 NA other upstream 94314 55233258 ~ 55233798 (+)
G819897 NA other upstream 600736 54726871 ~ 54727376 (+)
LOC110532368 LOC106572016 other upstream 2600592 52692676 ~ 52734929 (+)
LOC110532349 LOC106591969 other upstream 3002472 52323001 ~ 52325924 (+)
G815767 casz1 other upstream 3981618 51345372 ~ 51346494 (+)
G820944 NA other downstream 325053 55697640 ~ 55697978 (+)
G821363 uhrf1bp1 other downstream 601455 55974042 ~ 55975316 (+)
G821409 pacsin1 other downstream 689119 56061706 ~ 56063655 (+)
LOC110532426 NA other downstream 746532 56119005 ~ 56124213 (+)

Expression


Co-expression Network