LOC110532409 (LOC106572359)


Basic Information

Item Value
gene id LOC110532409
gene name LOC106572359
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 55375175 ~ 55410299 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616291.2
ATTTGTTTTTTCGCTTTGCATCGTGTCTTTATGCTTATGCAGTTCATACGGACAGTTTGTCAATGACAGATGGTTCTACAGCTCTAAGAATTACAGTCTTGTAAAAGTTTATTCAATAAATCACTCGCTCAGATCATTCCGTCTAATTGATATTCCCCATTGCAAGCCGAGGCACTCCCCTTTTTGTGTGAAGGAAAATCTCCCTCAGTCGCATCCAAAGCCGATCAAGCTGAAGAGACATATCAGCGACTTCAACTAGCGGGCGGCTGCACCATCACACCGCTTCTAATCAGCGACCTGTGCTTTAGTCTCAAACCGTTACAACACGTTAACTGGATTTTATTTTGTAAACTTACTACACCTAATGTGAGAGAGTGGCAAAGAATACTGGAATCTCAGACAAACGAGATGGGTGCCTTTGGGGTGATAGTAGGGACTTTACATTACATGGGACTCTACATCCAACTTACTGCCTCCACAAGGCAAGGTGGACACGCAGAGTTAGTGAACCACATCTCCGGGAACGCTGTGTTCACAGAGGTTCCCCATGACATCACAGCACAGAGTGGTCAGGACGTGGAGATGGCGTGCTCCTTCCGGGGGGCAGGCCCCTCCTACTCCCTGGAGATCCAGTGGTGGTACATCAGAAACCACAGAGACTGGACAGAGAAACAGCCCTGGACCACCAATCAGGTTGTACCCCAGGATGAGATGTCAAAGGATGCTACCAAAATAAGTGTGGTGAAGGTTGCCGGGAGCAACATCTCCCACAAGCTTTGTCTGTCCAGCGTGAAGCCGTCTGACGAGGGCACATACGAGTGCCGCGTGATCGACTTCAGCGACACCGACAGCAACGCCCGCCACCACAAGGTGAGGGCCTACCTGCAGGTGGAGTCAGAGAGAAACCAGAACCCGAAGCTGCGCCACCATGGAGAAAACTTCCAACCCCAGGACACCAAGGGACTGGCGAGCAGCAGGCACCAGCCGGAGCATGGCAAGCACTCGCCAGCAGCCCACCACAGCCACCACAAACCAACAGGCACTGGCAAGGAGCTGAGGAAGAGGTCTGCAGAGACTGGCAGCGCTACTGACTGTACTGACAGCTGTCCTCTACACCTCACAGCTCACCCATAGCCTCCTCTGCCTGTTTGGTCTGGCCTCAGCCCCACACCCCGGGTGGGTAGTTCCAGTCCCAGAGGGCCGCAACACAATGTACCCAGACCTCTGATTCATCCCAGCTGATTGCTCACCCACCCCTACCACTGCTCCTGACACCAAAGGGACTATATCTCAGTGCCACCTCAGTCCTATATCTCTGACCTCTGCCCTCACACTGTCCCATCAAAAACATCCCAAGTCCTCTCCCAGGCCAAACTCTCCCACCCCTTCTCTTTACCACAACCCTCTAGATCAGGagtgggcaactttgatggggatgGGGGCCAccaaaaatctgaactcatcctGAGTGACCACAGTGTGCgcacccacatccatacccacacatacaGTCAGAGCCGGCCCTAGTGTTTTTCACCCTAAGCTTCATTTTGTTGGGGGGCCCCCCACCCtgcgagcaaaacattttagcatcCCCCACTTTTAACAATGGAGAGAATTTTTGGTTTGTTTTAGAGTtactttcctgcaattctacacatttagccATGGGGTGTAGAAAAGATGTTGCCATTTTAACACATTTTATGCAATTTTACTCATTTAGCCATGGGGTGGAGACATATTAGCCGTGtttaagctaatttcctgcaattctacacattgtgttctgacttatgccatgttaatatatctgagtgagagtgacaaaAAAAAGAATTGATGGGGGGCCATGATTACTATGTTTAGATTGCTGGCTAGACTCATTTACTAATCTAAAAATGTGTAGCTAATTGAGTGAGtttcagtgactgacataagatAGAAACGGCTGATGCACAACCTAACTCTCAACAGTCAATTCCCCCGAATGAGttcctatttatttatttcaataaaTTGTTTTGGGTTTGAtctgccagttgcccatccctgctctagaTTGTCTACACTgtacatgttactgtatataatGATAAAAAGTGCATGTTTAACATGTTTTCTTACAAACTTTTTCAATCACCTAAGAGGATGTATAAGCTGGAAGGGTTACTTGTTGCTTTATTCATTTGGGTTTGTTTTCTGAGCAGTTCATTCGCTGTTTCTCCATGGTAAATCCAGAGTTCAGATAAGTCCAGATTTCCATCCAGCTCTGGTTGGAGCTGAAACCAATGTTTATAAAGTAAAACCTGTTCATTGTGTTTTGTGCTTTCCCAACAGATAATGTGGCTGTGAGAAGGACCTGATGGATAATGGAATTGTTTCTTGCTCTAACCTTTGCTTTGATGTTTTGTAAGAAATCATTGTAAAAATGTTGTACATTTTAGAATGTCTTCTAGGATGTTGGTCTCGCACTAAATTTATGCCTTTATCAAATTAAATAAAGTGTACATGAACCTA

Function

NR:

description
V-set and transmembrane domain-containing protein 2-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616291.2 True 2520 mRNA 0.46 4 55375175 55410299

Neighbor

gene id symbol gene type direction distance location
LOC110532408 ctbl1 coding upstream 2588 55328112 ~ 55372587 (+)
LOC110532406 LOC106572360 coding upstream 150803 55217606 ~ 55224372 (+)
LOC110532404 LOC106572363 coding upstream 167810 55192353 ~ 55207365 (+)
twist3 LOC106572367 coding upstream 440605 54926728 ~ 54934570 (+)
LOC110532395 LOC106571990 coding upstream 1069002 54295022 ~ 54306173 (+)
LOC110532410 LOC106572358 coding downstream 9024 55419323 ~ 55425566 (+)
LOC110533022 LOC106611372 coding downstream 62441 55472740 ~ 55482782 (+)
dlgap4a dlgap4 coding downstream 120734 55531033 ~ 55647541 (+)
LOC110532413 LOC106572354 coding downstream 238470 55648769 ~ 55683707 (+)
LOC110532415 LOC106572353 coding downstream 274955 55685254 ~ 55691748 (+)
G820771 NA non-coding upstream 48749 55326214 ~ 55326426 (+)
G820769 NA non-coding upstream 50123 55324832 ~ 55325052 (+)
G820760 NA non-coding upstream 53699 55320448 ~ 55321476 (+)
G820742 NA non-coding upstream 61757 55313040 ~ 55313418 (+)
G820734 NA non-coding upstream 67221 55307714 ~ 55307954 (+)
G820831 NA non-coding downstream 46280 55456579 ~ 55456870 (+)
G820837 NA non-coding downstream 55664 55465963 ~ 55466765 (+)
G820838 NA non-coding downstream 57400 55467699 ~ 55467901 (+)
G820665 NA other upstream 141377 55233258 ~ 55233798 (+)
G819897 NA other upstream 647799 54726871 ~ 54727376 (+)
LOC110532368 LOC106572016 other upstream 2647655 52692676 ~ 52734929 (+)
LOC110532349 LOC106591969 other upstream 3049535 52323001 ~ 52325924 (+)
G815767 casz1 other upstream 4028681 51345372 ~ 51346494 (+)
G820944 NA other downstream 287341 55697640 ~ 55697978 (+)
G821363 uhrf1bp1 other downstream 563743 55974042 ~ 55975316 (+)
G821409 pacsin1 other downstream 651407 56061706 ~ 56063655 (+)
LOC110532426 NA other downstream 708820 56119005 ~ 56124213 (+)

Expression


Co-expression Network