LOC110532410 (LOC106572358)


Basic Information

Item Value
gene id LOC110532410
gene name LOC106572358
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 55419323 ~ 55425566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988355.1
GAAAGATATTGCAACGGTTTTCAGATCAAAGTTCACTTCGCCCAGGTAGCTAAGCGAGTAGCCTGAGATACTCTTTGGCTACGCTAACTTACTAACAGTAAGCTAGCTAGCGCAACATTTTTGCTGATGATACTGTACTTgtcttaaaaaaaatgtaaatgtcacatttatttaaccaggtaggccagttgagaacaagttctcatttacaactgcgacctggtcaagataaagcaaagcagtacgacaaaaacaacaacagatttacacataaacaaacgtacagtcaataacataataGCATAGTCTTGACCGACGTCGGTTGATCTAGCTAGCAACTTTGCATGTCATTTTAAGTCGTTTGAATAATGTTTCTAGTCATGATCTAATTTCACAAGATTCACAAAGGGTTTTGAACAGACTTTGAACCCTGTGTGTCGGGTGAAAGGTCAAGCGGCCATCTTTGAAGCGACCCAGAGAGCTGTGGTGGTTTCTAGAATGCTAGTTAACTAGCTACTATACTAGTACTGTAGCTAACGAAGAAACGTTACAGCTACATGTATTCAAACGGCACATTACTAAATTATAAATAGATGTATTGTTAACCTCAAAGTTGTGGGGTGTGTAACGGTACATCAAAGAGTACTTTCTGGGCACATCATGTCTTCTTTTTCTGAGTCTGCGTTGGAGAAGAAGCTTTCTGAGCTCAGCAACTCTCAGCAAAGCGTACAGACGCTGTCTCTGTGGATCATTCATCACCGCAAACACTCGCCGCTCATCGTCAAAGTATGGCACAGAGAACTGAAGAAAGCAAAAAGCAGCAGGAAGTTGACTTTCCTGTATCTTGCCAATGACGTGATTCAAAACAGCAAGAAGAAAGGTCCAGAGTTCGCCAAAGACTTTGAGACAGTCCTTGTTGACGCTTGCTCTCATGTTGCAAGagAGGCAGATGATGGCTGTAGAAGGCCCATCGACAGGCTGCTCACTATCTGGCAGGAGCGCAGCCTCTACAAGGCAGAGTTCATCCAGCAGCTGAAGCTCGCTATCGAAGACTCAAACAGCCCCCAACACCAACCCACAGAGGAGAAGAAGGCCCCTAAACGGACCTATCAGAAGATGATCCAAGAGccggaggaagaggaagaagatgaCTACAGGGGCAACATGTCCCCACAGAATTCAGACTTCTCAGGGCCACAGCTGaCGGAGGAGCTGGTCAAAGCCCTGCAGGACCTGGAGAATGCAGCCTCGGGTGATGCTGCGGTGCGCCAGAAGATTGCCTCTCTGCCACAGGAGGTGCAGGATGTGTCCCTGCTGGAGAAGATCACAGATAAAGAGGCAGCTGATAAACTCTCCAAGACAGTGGATGAGGCCTGTCTACTGCTGGCTGAGTATAACGGACGTCTGGCTGCTGAGCTGGAGGACAGGAGGCAGCTGGCGCGCATGCTGACCGAGTACATCGGTAGCCAGAAGGAAGCcctcacagagagggagaagaaactAGAAGAGTACAAACAGAAGCTGGCACGAGTCACGCAGGTGCGCAAGGAGCTCAAGTCTCACATCCagagcctgcctgacctctctCTGCTGCCCAATGTGACGGGAGGCCTGGCCCCTCTACCCTCTGCTGGAGACCTGTTCTCCACCGACTGAGCTTCCTGCTCCCTGTCACACCCTGCCTCTCGCCAGGGCACACACTCCCTGTCGAACCCGCTCACTAGCTACTGAACCCtagggagagactgagagggacaTTGGAAGCTTGGGGACATCCCTGGTGGGAGAGACAATGGTTGTTGAAGATTCCGTTCCACCAGCTTGGACAAATCTCCTTTACATTTTTATTCTGAACGCCAGTCAAACGCTAGCTAACTGATTCTGTGTTGAAGAGAAATGTTGGGTCATTAGCCAATCTCCATTTTTGTGTTCATATGGTGAGATGGTGGCTCGCACACACACTAgatcacgtgtcaaactcattccacggagggtcaactgtctgtgggttttcactcctcccttgtacttgattgatgaaataaggtcactaattagtaaagaaaTCCCCTCACCTTGTTTCTGTGTCTTAGGGAAAAGCAAAaaccctccatggaatgagtttgacacccctgcactAGATCGTCGGGACAGCTTTGTGAAGAGACACGTCACATTTATTTTAACGGCTTTAAGTTGGTTGCTTTTTAATGTTGATGAAATTTCAGGTGATTTTTTGTTAGGGTGTATGTAGGGAGGGGGCCTGTTTTTCCATGTAGGTTGTCATTATTTACCATTCTCTGTAATTCCAGTTCAACACACAACAATATCCTTACCTTTCAGGTTTGTCATACATAGCACTGAGTGGCCAATCATCGGTCAATAACATTTCATCCATGTAGTGGTGTTTCTCAATCCATTGTGAAATAGTTTAGCCCTCAGACAAGTGACTGATTGAAGTTATTTGAGCAAACTTGGGGCAGATTGAGATGCTCACTGTCTTTGCTGAGCTCTGCTGATGTCATCCTTTGTCACAGATGATTGTATCACTTGGTACAAATGTCAAACTAAGAGGCTTTTCAGGACTTGGCCCGGCCACTACTTATTCAGCATTATTCAGACTTTTTTGAAGAGTAGCAGAAAGTTAACATGGTTTGTTCTGTCACTAGTTTGGATTATGGGCACAGACCTGAGAGATAAGTGTTTCCCCATGTTGAAGAATAGTAATACGACATCTGCCCATGGAAATGTTGCTTTACTACAGATGGTAGACCTGTGTGGCATGTATTTCTCTCTGCCGATGCTTTACTACAGATGGTAGACCTGTGTGGCATGTATTTCTCTCTGCCGATGCTTTACTACAGATGGTAGACCTGTGTGGCATGTATTTCTCTCTGCCGATACTTTACTACAGCAGTCATTTCACTTATAAAataattccatggatagaaaTAAAATGGAACCATTTGGAAAGA

Function

NR:

description
regulation of nuclear pre-mRNA domain-containing protein 1B-like

GO: NA

KEGG:

id description
K15559 RTT103; regulator of Ty1 transposition protein 103

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988355.1 True 2975 mRNA 0.46 8 55419323 55425566

Neighbor

gene id symbol gene type direction distance location
LOC110532409 LOC106572359 coding upstream 9024 55375175 ~ 55410299 (+)
LOC110532408 ctbl1 coding upstream 46736 55328112 ~ 55372587 (+)
LOC110532406 LOC106572360 coding upstream 194951 55217606 ~ 55224372 (+)
LOC110532404 LOC106572363 coding upstream 211958 55192353 ~ 55207365 (+)
twist3 LOC106572367 coding upstream 484753 54926728 ~ 54934570 (+)
LOC110533022 LOC106611372 coding downstream 47174 55472740 ~ 55482782 (+)
dlgap4a dlgap4 coding downstream 105467 55531033 ~ 55647541 (+)
LOC110532413 LOC106572354 coding downstream 223203 55648769 ~ 55683707 (+)
LOC110532415 LOC106572353 coding downstream 259688 55685254 ~ 55691748 (+)
LOC110532416 scube3 coding downstream 278019 55703585 ~ 55827053 (+)
G820771 NA non-coding upstream 92897 55326214 ~ 55326426 (+)
G820769 NA non-coding upstream 94271 55324832 ~ 55325052 (+)
G820760 NA non-coding upstream 97847 55320448 ~ 55321476 (+)
G820742 NA non-coding upstream 105905 55313040 ~ 55313418 (+)
G820734 NA non-coding upstream 111369 55307714 ~ 55307954 (+)
G820831 NA non-coding downstream 31013 55456579 ~ 55456870 (+)
G820837 NA non-coding downstream 40397 55465963 ~ 55466765 (+)
G820838 NA non-coding downstream 42133 55467699 ~ 55467901 (+)
G820665 NA other upstream 185525 55233258 ~ 55233798 (+)
G819897 NA other upstream 691947 54726871 ~ 54727376 (+)
LOC110532368 LOC106572016 other upstream 2691803 52692676 ~ 52734929 (+)
LOC110532349 LOC106591969 other upstream 3093683 52323001 ~ 52325924 (+)
G815767 casz1 other upstream 4072829 51345372 ~ 51346494 (+)
G820944 NA other downstream 272074 55697640 ~ 55697978 (+)
G821363 uhrf1bp1 other downstream 548476 55974042 ~ 55975316 (+)
G821409 pacsin1 other downstream 636140 56061706 ~ 56063655 (+)
LOC110532426 NA other downstream 693553 56119005 ~ 56124213 (+)

Expression


Co-expression Network